Wall clock time and date at job start Mon Mar 30 2020 05:59:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38764 * 120.00064 * 2 1 4 4 C 1.37148 * 120.61877 * 179.97438 * 3 2 1 5 5 C 1.41201 * 120.42298 * 0.27852 * 4 3 2 6 6 N 1.34612 * 128.74095 * 180.36851 * 5 4 3 7 7 C 1.28999 * 117.90605 * 179.62584 * 6 5 4 8 8 N 1.37880 * 124.82655 * 179.69740 * 7 6 5 9 9 C 1.46496 * 119.99928 * 180.02562 * 8 7 6 10 10 C 1.36933 * 119.99784 * 0.02841 * 8 7 6 11 11 H 1.08000 * 120.00057 * 22.37010 * 10 8 7 12 12 C 1.38808 * 119.99528 * 202.37542 * 10 8 7 13 13 N 1.31554 * 120.00367 * 11.27135 * 12 10 8 14 14 Si 1.86802 * 119.99857 * 191.27325 * 12 10 8 15 15 H 1.48500 * 109.47035 * 359.97438 * 14 12 10 16 16 H 1.48501 * 109.47347 * 119.99627 * 14 12 10 17 17 H 1.48492 * 109.47238 * 239.99993 * 14 12 10 18 18 S 1.75812 * 110.35040 * 359.72042 * 7 6 5 19 19 C 1.39895 * 118.36144 * 359.45928 * 5 4 3 20 20 C 1.37697 * 119.99644 * 179.97438 * 2 1 3 21 21 H 1.08998 * 109.46645 * 90.00245 * 1 2 3 22 22 H 1.09001 * 109.47236 * 210.00076 * 1 2 3 23 23 H 1.09000 * 109.46955 * 330.00542 * 1 2 3 24 24 H 1.07997 * 119.68953 * 359.95543 * 3 2 1 25 25 H 1.08001 * 119.78468 * 179.97438 * 4 3 2 26 26 H 1.09003 * 109.47302 * 93.63201 * 9 8 7 27 27 H 1.09004 * 109.47273 * 213.63152 * 9 8 7 28 28 H 1.08997 * 109.47570 * 333.62970 * 9 8 7 29 29 H 0.96999 * 119.99853 * 179.97438 * 13 12 10 30 30 H 1.07994 * 119.90708 * 0.04935 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2009 1.2017 0.0000 4 6 3.5723 1.2165 0.0005 5 6 4.3004 0.0067 -0.0048 6 7 5.6344 -0.1737 0.0015 7 6 6.0799 -1.3843 0.0019 8 7 7.4141 -1.7323 0.0021 9 6 7.8025 -3.1449 0.0020 10 6 8.3759 -0.7577 0.0024 11 1 8.1395 0.2342 0.3584 12 6 9.6546 -1.0445 -0.4551 13 7 9.8884 -2.1724 -1.0907 14 14 11.0437 0.1711 -0.1683 15 1 10.5234 1.3535 0.5641 16 1 12.1118 -0.4779 0.6337 17 1 11.6001 0.6043 -1.4751 18 16 4.7441 -2.5274 0.0017 19 6 3.5884 -1.1975 0.0010 20 6 2.1955 -1.1925 0.0005 21 1 -0.3632 0.0000 -1.0277 22 1 -0.3634 -0.8900 0.5138 23 1 -0.3633 0.8900 0.5138 24 1 1.6559 2.1341 -0.0007 25 1 4.0987 2.1596 0.0001 26 1 7.9618 -3.4779 -1.0236 27 1 8.7239 -3.2684 0.5713 28 1 7.0111 -3.7394 0.4583 29 1 10.7819 -2.3726 -1.4107 30 1 1.6540 -2.1269 0.0001 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260328015.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:47 Heat of formation + Delta-G solvation = 44.533734 kcal Electronic energy + Delta-G solvation = -15115.136193 eV Core-core repulsion = 12615.162656 eV Total energy + Delta-G solvation = -2499.973537 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.068 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.77996 -39.02356 -36.89373 -33.99750 -32.16887 -31.39040 -28.74717 -27.66869 -25.70391 -24.31210 -22.65727 -21.72413 -19.36281 -18.81235 -17.80691 -16.60558 -16.43767 -15.98566 -15.82183 -15.27405 -15.05084 -14.75733 -14.50458 -13.94364 -13.53483 -13.38541 -13.27105 -12.80963 -12.70139 -12.66017 -12.41180 -12.24263 -12.11457 -11.51822 -11.17763 -10.80429 -10.28451 -10.06283 -8.95516 -8.65876 -8.41348 -5.97154 -0.02829 0.40537 0.43530 1.00980 1.36903 1.39987 1.54409 1.79512 2.15156 2.59248 2.84458 3.07911 3.84435 4.03682 4.17555 4.32127 4.47930 4.55936 4.72670 4.79400 4.93722 5.01257 5.07395 5.15800 5.27668 5.35680 5.46529 5.51810 5.72020 5.76228 6.12033 6.36215 6.91048 7.14893 7.56106 8.46877 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.040699 B = 0.006015 C = 0.005307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.812090 B = 4654.158997 C = 5274.292939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.130 4.130 3 C -0.077 4.077 4 C -0.139 4.139 5 C 0.133 3.867 6 N -0.628 5.628 7 C 0.317 3.683 8 N -0.396 5.396 9 C 0.129 3.871 10 C -0.316 4.316 11 H 0.090 0.910 12 C -0.001 4.001 13 N -0.886 5.886 14 Si 1.004 2.996 15 H -0.269 1.269 16 H -0.262 1.262 17 H -0.273 1.273 18 S -0.023 6.023 19 C -0.238 4.238 20 C -0.055 4.055 21 H 0.076 0.924 22 H 0.071 0.929 23 H 0.081 0.919 24 H 0.159 0.841 25 H 0.122 0.878 26 H 0.060 0.940 27 H 0.075 0.925 28 H 0.056 0.944 29 H 0.282 0.718 30 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.294 0.806 1.986 11.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.134 4.134 3 C -0.098 4.098 4 C -0.162 4.162 5 C 0.009 3.991 6 N -0.361 5.361 7 C -0.055 4.055 8 N -0.091 5.091 9 C -0.014 4.014 10 C -0.448 4.448 11 H 0.107 0.893 12 C -0.206 4.206 13 N -0.521 5.521 14 Si 0.826 3.174 15 H -0.193 1.193 16 H -0.187 1.187 17 H -0.198 1.198 18 S 0.223 5.777 19 C -0.359 4.359 20 C -0.079 4.079 21 H 0.094 0.906 22 H 0.090 0.910 23 H 0.100 0.900 24 H 0.176 0.824 25 H 0.140 0.860 26 H 0.079 0.921 27 H 0.094 0.906 28 H 0.074 0.926 29 H 0.092 0.908 30 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -10.392 -0.218 1.897 10.566 hybrid contribution 0.855 1.025 -0.084 1.337 sum -9.538 0.807 1.813 9.742 Atomic orbital electron populations 1.20677 0.87927 1.03656 1.02934 1.19961 0.97670 0.91526 1.04226 1.21018 0.91993 0.99131 0.97609 1.20658 0.94434 0.94610 1.06533 1.19410 0.86596 0.94910 0.98198 1.66128 1.13210 1.19845 1.36965 1.24131 0.90161 0.90062 1.01166 1.42468 0.98976 1.07440 1.60208 1.21633 0.99316 0.78019 1.02421 1.20016 0.89479 0.94129 1.41161 0.89251 1.26328 1.00778 0.99569 0.93951 1.70121 1.23892 1.24685 1.33432 0.84703 0.76627 0.77583 0.78453 1.19338 1.18701 1.19827 1.83954 0.98781 1.10541 1.84392 1.23458 0.99110 0.94594 1.18726 1.20331 0.88997 0.99395 0.99128 0.90556 0.91037 0.90034 0.82352 0.85974 0.92123 0.90640 0.92555 0.90823 0.84650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.67 10.01 71.24 0.71 -0.96 16 2 C -0.13 -3.55 5.88 -19.86 -0.12 -3.67 16 3 C -0.08 -2.22 9.65 22.14 0.21 -2.00 16 4 C -0.14 -5.26 10.10 22.74 0.23 -5.03 16 5 C 0.13 6.12 6.94 39.85 0.28 6.40 16 6 N -0.63 -33.33 9.89 -189.22 -1.87 -35.20 16 7 C 0.32 16.28 7.82 179.76 1.40 17.69 16 8 N -0.40 -20.78 3.10 -544.46 -1.69 -22.46 16 9 C 0.13 5.87 8.70 127.77 1.11 6.98 16 10 C -0.32 -17.30 9.41 84.03 0.79 -16.51 16 11 H 0.09 5.15 7.56 -2.91 -0.02 5.13 16 12 C 0.00 -0.07 5.13 84.87 0.43 0.36 16 13 N -0.89 -44.85 10.58 21.65 0.23 -44.62 16 14 Si 1.00 40.32 29.57 68.60 2.03 42.35 16 15 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 16 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 17 H -0.27 -10.71 7.11 99.48 0.71 -10.01 16 18 S -0.02 -0.98 21.82 -56.49 -1.23 -2.21 16 19 C -0.24 -9.92 6.52 22.93 0.15 -9.77 16 20 C -0.06 -1.81 9.71 22.40 0.22 -1.59 16 21 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 22 H 0.07 1.12 8.08 -2.39 -0.02 1.10 16 23 H 0.08 1.14 8.09 -2.39 -0.02 1.12 16 24 H 0.16 3.23 8.06 -2.91 -0.02 3.20 16 25 H 0.12 4.39 8.06 -2.91 -0.02 4.37 16 26 H 0.06 2.87 7.45 -2.39 -0.02 2.85 16 27 H 0.07 3.47 7.15 -2.38 -0.02 3.45 16 28 H 0.06 2.25 6.89 -2.39 -0.02 2.23 16 29 H 0.28 13.17 8.31 -92.71 -0.77 12.40 16 30 H 0.14 3.70 8.06 -2.91 -0.02 3.68 16 Total: -1.00 -62.99 271.99 4.04 -58.94 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: 1.15 Total: 11.29 kcal Atomic # 6 Polarization: -13.52 SS G_CDS: 5.43 Total: -8.09 kcal Atomic # 7 Polarization: -98.95 SS G_CDS: -3.33 Total: -102.28 kcal Atomic # 14 Polarization: 40.32 SS G_CDS: 2.03 Total: 42.35 kcal Atomic # 16 Polarization: -0.98 SS G_CDS: -1.23 Total: -2.21 kcal Total: -62.99 4.04 -58.94 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260328015.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.478 kcal (2) G-P(sol) polarization free energy of solvation -62.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds