Wall clock time and date at job start Mon Mar 30 2020 05:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31293 * 1 3 3 Si 1.86798 * 120.00347 * 2 1 4 4 H 1.48507 * 109.47110 * 270.00278 * 3 2 1 5 5 H 1.48498 * 109.47058 * 30.00140 * 3 2 1 6 6 H 1.48495 * 109.47161 * 150.00459 * 3 2 1 7 7 C 1.38993 * 119.99841 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99992 * 179.97438 * 7 2 1 9 9 N 1.37334 * 119.99562 * 359.97438 * 7 2 1 10 10 C 1.36531 * 126.08479 * 180.23995 * 9 7 2 11 11 C 1.35539 * 107.52117 * 180.13811 * 10 9 7 12 12 O 1.36147 * 126.05646 * 179.90301 * 11 10 9 13 13 C 1.35862 * 117.99886 * 185.67424 * 12 11 10 14 14 C 1.38820 * 120.04281 * 249.36797 * 13 12 11 15 15 C 1.38124 * 119.98857 * 179.97438 * 14 13 12 16 16 C 1.38259 * 120.08471 * 0.02562 * 15 14 13 17 17 C 1.38481 * 120.09197 * 0.02562 * 16 15 14 18 18 F 1.35108 * 119.99446 * 180.02562 * 17 16 15 19 19 C 1.38370 * 120.01380 * 359.97438 * 17 16 15 20 20 C 1.40530 * 107.88407 * 359.64313 * 11 10 9 21 21 N 1.30935 * 108.39978 * 0.21896 * 20 11 10 22 22 H 0.97001 * 119.99418 * 0.02562 * 1 2 3 23 23 H 1.07999 * 126.23434 * 0.02562 * 10 9 7 24 24 H 1.07994 * 120.00504 * 359.70296 * 14 13 12 25 25 H 1.08000 * 119.95333 * 180.02562 * 15 14 13 26 26 H 1.07997 * 119.95349 * 179.97438 * 16 15 14 27 27 H 1.07997 * 120.04517 * 180.02562 * 19 17 16 28 28 H 1.07998 * 125.79987 * 180.22887 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2470 1.6177 0.0000 4 1 2.4945 2.0464 -1.4001 5 1 1.4445 2.6526 0.7001 6 1 3.5446 1.4400 0.6999 7 6 2.0079 -1.2037 -0.0005 8 1 3.0878 -1.2038 -0.0010 9 7 1.3211 -2.3930 -0.0005 10 6 1.8744 -3.6412 0.0036 11 6 0.8582 -4.5380 -0.0011 12 8 0.9857 -5.8935 -0.0011 13 6 -0.1425 -6.6403 -0.1249 14 6 -0.6033 -7.3868 0.9510 15 6 -1.7507 -8.1452 0.8241 16 6 -2.4412 -8.1624 -0.3736 17 6 -1.9840 -7.4198 -1.4494 18 9 -2.6605 -7.4377 -2.6187 19 6 -0.8350 -6.6587 -1.3266 20 6 -0.3503 -3.8209 0.0000 21 7 -0.0717 -2.5415 0.0004 22 1 -0.4849 0.8401 -0.0004 23 1 2.9295 -3.8717 0.0078 24 1 -0.0623 -7.3781 1.8856 25 1 -2.1089 -8.7255 1.6615 26 1 -3.3379 -8.7565 -0.4707 27 1 -0.4782 -6.0791 -2.1651 28 1 -1.3406 -4.2518 0.0005 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260333828.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:43 Heat of formation + Delta-G solvation = 18.659309 kcal Electronic energy + Delta-G solvation = -16845.697496 eV Core-core repulsion = 13778.388783 eV Total energy + Delta-G solvation = -3067.308713 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 248.070 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.97042 -41.89565 -40.50634 -38.23254 -35.38778 -32.37092 -31.78096 -31.30025 -29.55056 -26.95563 -24.14897 -23.74680 -22.58050 -21.63908 -20.17732 -18.46203 -17.82260 -17.51835 -17.20717 -17.04934 -16.64406 -16.00993 -15.75377 -15.62422 -15.04032 -14.79644 -14.73306 -13.62257 -13.49370 -13.34969 -13.00274 -12.88145 -12.82321 -12.55481 -12.24971 -12.07892 -11.24444 -10.91843 -10.23682 -9.99186 -9.69520 -8.79561 -8.51827 -6.30852 0.00292 0.12339 1.25111 1.39984 1.57882 1.70992 2.01454 2.13581 2.27906 2.71694 2.85518 3.03560 3.27081 3.80376 4.00134 4.05596 4.18611 4.31313 4.49378 4.67588 4.83530 4.98876 5.02116 5.06396 5.26188 5.27149 5.36884 5.58000 5.83335 6.01837 6.60631 6.90630 7.34445 7.53218 8.47779 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.044111 B = 0.004970 C = 0.004743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.616567 B = 5632.474213 C = 5902.441785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C -0.004 4.004 3 Si 1.021 2.979 4 H -0.264 1.264 5 H -0.274 1.274 6 H -0.245 1.245 7 C -0.353 4.353 8 H 0.140 0.860 9 N -0.160 5.160 10 C -0.079 4.079 11 C -0.074 4.074 12 O -0.260 6.260 13 C 0.113 3.887 14 C -0.141 4.141 15 C -0.060 4.060 16 C -0.154 4.154 17 C 0.098 3.902 18 F -0.145 7.145 19 C -0.195 4.195 20 C -0.094 4.094 21 N -0.293 5.293 22 H 0.279 0.721 23 H 0.182 0.818 24 H 0.149 0.851 25 H 0.184 0.816 26 H 0.170 0.830 27 H 0.118 0.882 28 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.757 -11.618 1.658 11.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.216 4.216 3 Si 0.839 3.161 4 H -0.189 1.189 5 H -0.199 1.199 6 H -0.168 1.168 7 C -0.484 4.484 8 H 0.158 0.842 9 N 0.068 4.932 10 C -0.226 4.226 11 C -0.128 4.128 12 O -0.171 6.171 13 C 0.070 3.930 14 C -0.160 4.160 15 C -0.078 4.078 16 C -0.172 4.172 17 C 0.079 3.921 18 F -0.124 7.124 19 C -0.215 4.215 20 C -0.268 4.268 21 N -0.127 5.127 22 H 0.089 0.911 23 H 0.199 0.801 24 H 0.167 0.833 25 H 0.201 0.799 26 H 0.188 0.812 27 H 0.136 0.864 28 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -2.264 -10.429 1.629 10.796 hybrid contribution 0.321 0.007 -0.637 0.714 sum -1.943 -10.422 0.992 10.648 Atomic orbital electron populations 1.70360 1.08324 1.29364 1.36857 1.26872 0.96553 1.04182 0.93973 0.84569 0.78313 0.73909 0.79298 1.18887 1.19861 1.16844 1.20668 0.93059 0.80632 1.54007 0.84223 1.44812 1.03488 1.04428 1.40436 1.21516 0.98643 0.83839 1.18640 1.18309 0.93109 0.81317 1.20094 1.84043 1.29165 1.13736 1.90151 1.18792 0.87290 0.93985 0.92938 1.21592 0.97499 0.99181 0.97712 1.21321 0.92195 0.96414 0.97835 1.21541 1.02993 1.00797 0.91881 1.17660 0.91711 0.99813 0.82922 1.91481 1.79018 1.95368 1.46541 1.21454 0.97237 1.03329 0.99475 1.23827 0.97894 0.92150 1.12919 1.78077 0.91947 1.15832 1.26827 0.91129 0.80120 0.83341 0.79918 0.81230 0.86378 0.81958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -46.31 11.82 21.66 0.26 -46.06 15 2 C 0.00 -0.19 5.50 84.95 0.47 0.27 15 3 Si 1.02 38.07 29.55 68.60 2.03 40.09 15 4 H -0.26 -9.52 7.11 99.48 0.71 -8.81 15 5 H -0.27 -10.01 7.11 99.48 0.71 -9.31 15 6 H -0.25 -8.37 7.11 99.48 0.71 -7.66 15 7 C -0.35 -18.74 10.25 84.01 0.86 -17.88 15 8 H 0.14 6.51 7.83 -2.91 -0.02 6.48 15 9 N -0.16 -8.97 3.74 -190.08 -0.71 -9.68 15 10 C -0.08 -3.94 11.49 83.34 0.96 -2.98 15 11 C -0.07 -3.58 6.80 22.20 0.15 -3.43 15 12 O -0.26 -10.93 10.08 -38.24 -0.39 -11.32 15 13 C 0.11 3.97 5.13 22.52 0.12 4.08 15 14 C -0.14 -3.76 9.99 22.38 0.22 -3.53 15 15 C -0.06 -1.15 10.04 22.25 0.22 -0.93 15 16 C -0.15 -3.23 10.02 22.33 0.22 -3.01 15 17 C 0.10 2.82 7.30 22.36 0.16 2.98 15 18 F -0.15 -4.32 17.27 44.97 0.78 -3.54 15 19 C -0.20 -6.70 9.10 22.41 0.20 -6.50 15 20 C -0.09 -4.86 10.85 85.39 0.93 -3.93 15 21 N -0.29 -17.18 10.40 -56.53 -0.59 -17.77 15 22 H 0.28 14.37 8.31 -92.71 -0.77 13.60 15 23 H 0.18 7.63 8.06 -2.91 -0.02 7.61 15 24 H 0.15 3.51 8.06 -2.91 -0.02 3.48 15 25 H 0.18 1.86 8.06 -2.91 -0.02 1.84 15 26 H 0.17 2.39 8.06 -2.91 -0.02 2.36 15 27 H 0.12 4.44 8.06 -2.91 -0.02 4.42 15 28 H 0.16 7.63 7.56 -2.91 -0.02 7.61 15 Total: -1.00 -68.58 264.62 7.08 -61.50 By element: Atomic # 1 Polarization: 20.44 SS G_CDS: 1.19 Total: 21.63 kcal Atomic # 6 Polarization: -39.36 SS G_CDS: 4.52 Total: -34.84 kcal Atomic # 7 Polarization: -72.47 SS G_CDS: -1.04 Total: -73.51 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: -0.39 Total: -11.32 kcal Atomic # 9 Polarization: -4.32 SS G_CDS: 0.78 Total: -3.54 kcal Atomic # 14 Polarization: 38.07 SS G_CDS: 2.03 Total: 40.09 kcal Total: -68.58 7.08 -61.50 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260333828.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.155 kcal (2) G-P(sol) polarization free energy of solvation -68.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds