Wall clock time and date at job start Mon Mar 30 2020 06:22:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86794 * 120.00053 * 2 1 4 4 H 1.48502 * 109.47172 * 239.99484 * 3 2 1 5 5 H 1.48505 * 109.47260 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47370 * 119.99567 * 3 2 1 7 7 C 1.39948 * 119.99953 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99810 * 197.86883 * 7 2 1 9 9 C 1.41395 * 119.99925 * 17.87379 * 7 2 1 10 10 C 1.40711 * 120.24754 * 204.39345 * 9 7 2 11 11 C 1.37620 * 119.74973 * 179.97438 * 10 9 7 12 12 C 1.38634 * 120.24628 * 0.02562 * 11 10 9 13 13 C 1.50692 * 119.75158 * 179.97438 * 12 11 10 14 14 C 1.53004 * 109.47455 * 89.99660 * 13 12 11 15 15 H 1.09001 * 108.82769 * 54.29753 * 14 13 12 16 16 C 1.52334 * 108.86989 * 172.83065 * 14 13 12 17 17 C 1.54265 * 112.58274 * 120.82111 * 16 14 13 18 18 S 1.83951 * 102.58345 * 24.52816 * 17 16 14 19 19 C 1.54263 * 108.86840 * 295.77420 * 14 13 12 20 20 C 1.38639 * 120.50068 * 359.97438 * 12 11 10 21 21 C 1.37620 * 120.25160 * 0.02562 * 20 12 11 22 22 H 0.97003 * 119.99746 * 0.02562 * 1 2 3 23 23 H 1.08010 * 120.12386 * 359.95959 * 10 9 7 24 24 H 1.07998 * 119.87502 * 179.72457 * 11 10 9 25 25 H 1.08994 * 109.47321 * 210.00038 * 13 12 11 26 26 H 1.08999 * 109.46877 * 329.99922 * 13 12 11 27 27 H 1.08999 * 108.86565 * 241.63705 * 16 14 13 28 28 H 1.08997 * 108.86749 * 0.14903 * 16 14 13 29 29 H 1.09001 * 110.78261 * 142.80460 * 17 16 14 30 30 H 1.08999 * 110.78369 * 266.06010 * 17 16 14 31 31 H 1.09002 * 110.78166 * 332.92124 * 19 14 13 32 32 H 1.08999 * 110.79049 * 96.37274 * 19 14 13 33 33 H 1.07999 * 119.87727 * 180.02562 * 20 12 11 34 34 H 1.07990 * 120.13095 * 180.02562 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0961 1.6963 -1.2124 5 1 1.2772 2.7465 -0.0006 6 1 3.0959 1.6964 1.2126 7 6 2.0079 -1.2120 0.0005 8 1 3.0488 -1.2344 0.2875 9 6 1.3521 -2.4071 -0.3748 10 6 1.8255 -3.6499 0.0851 11 6 1.1790 -4.8067 -0.2861 12 6 0.0657 -4.7508 -1.1103 13 6 -0.6333 -6.0244 -1.5104 14 6 -1.7226 -6.3516 -0.4869 15 1 -2.3812 -5.4889 -0.3862 16 6 -2.5356 -7.5357 -0.9942 17 6 -2.5035 -8.7352 -0.0247 18 16 -2.1402 -7.9349 1.5912 19 6 -1.0577 -6.6334 0.8764 20 6 -0.4095 -3.5319 -1.5694 21 6 0.2211 -2.3624 -1.2109 22 1 -0.4850 0.8401 -0.0004 23 1 2.6931 -3.6957 0.7267 24 1 1.5432 -5.7619 0.0620 25 1 -1.0854 -5.8973 -2.4939 26 1 0.0892 -6.8398 -1.5452 27 1 -3.5700 -7.2204 -1.1307 28 1 -2.1343 -7.8523 -1.9568 29 1 -3.4705 -9.2377 0.0011 30 1 -1.7136 -9.4340 -0.3000 31 1 -0.0420 -7.0053 0.7418 32 1 -1.0642 -5.7407 1.5018 33 1 -1.2779 -3.5000 -2.2107 34 1 -0.1509 -1.4141 -1.5693 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260405165.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:16 Heat of formation + Delta-G solvation = -6.008581 kcal Electronic energy + Delta-G solvation = -15414.994914 eV Core-core repulsion = 13016.370040 eV Total energy + Delta-G solvation = -2398.624873 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.20335 -36.37695 -33.74419 -31.27857 -29.50800 -28.91385 -27.15042 -25.07770 -23.11040 -21.02721 -20.11970 -19.36178 -17.31698 -16.39593 -15.74426 -15.21880 -14.51794 -14.11673 -13.88521 -13.52289 -13.29381 -12.66865 -12.58580 -12.01266 -11.96838 -11.74989 -11.63196 -11.34008 -11.23201 -11.04057 -10.78584 -10.56058 -10.36945 -10.16481 -9.74963 -9.51119 -9.39024 -9.11508 -7.61330 -7.47981 -7.29856 -6.77929 -4.36215 2.04192 2.47777 2.75075 3.03776 3.05610 3.07706 3.18993 3.91570 4.54719 4.66103 4.86421 5.06331 5.21516 5.36311 5.55369 5.65301 5.71782 5.84525 5.90119 5.98806 6.16817 6.24833 6.29283 6.41237 6.44865 6.57663 6.93531 7.06030 7.27091 7.35173 7.58858 7.84865 8.03399 8.09945 8.28303 8.62247 8.87964 8.95890 10.16697 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.044810 B = 0.004711 C = 0.004647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.705688 B = 5942.149882 C = 6024.404262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.077 3.923 3 Si 0.907 3.093 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.465 4.465 8 H 0.076 0.924 9 C 0.110 3.890 10 C -0.226 4.226 11 C -0.086 4.086 12 C -0.215 4.215 13 C -0.046 4.046 14 C -0.088 4.088 15 H 0.082 0.918 16 C -0.123 4.123 17 C -0.062 4.062 18 S -0.330 6.330 19 C -0.038 4.038 20 C -0.096 4.096 21 C -0.165 4.165 22 H 0.281 0.719 23 H 0.090 0.910 24 H 0.085 0.915 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.098 0.902 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.105 0.895 33 H 0.085 0.915 34 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.704 -9.551 -2.293 10.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.188 1.188 5 H -0.203 1.203 6 H -0.190 1.190 7 C -0.494 4.494 8 H 0.095 0.905 9 C 0.107 3.893 10 C -0.246 4.246 11 C -0.105 4.105 12 C -0.217 4.217 13 C -0.085 4.085 14 C -0.109 4.109 15 H 0.101 0.899 16 C -0.162 4.162 17 C -0.210 4.210 18 S -0.103 6.103 19 C -0.186 4.186 20 C -0.115 4.115 21 C -0.184 4.184 22 H 0.092 0.908 23 H 0.108 0.892 24 H 0.103 0.897 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.090 0.910 28 H 0.093 0.907 29 H 0.116 0.884 30 H 0.103 0.897 31 H 0.108 0.892 32 H 0.124 0.876 33 H 0.103 0.897 34 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -4.278 -9.641 -1.109 10.605 hybrid contribution 0.684 1.100 -0.990 1.630 sum -3.594 -8.541 -2.099 9.501 Atomic orbital electron populations 1.69817 1.07587 1.29301 1.35167 1.25899 0.94704 1.01278 0.92225 0.86389 0.80183 0.80292 0.79990 1.18830 1.20330 1.19002 1.19568 0.98134 0.91363 1.40337 0.90550 1.17612 0.91163 0.91991 0.88491 1.20966 1.03717 0.92983 1.06906 1.20364 0.95748 0.96230 0.98125 1.18993 1.00998 0.93115 1.08559 1.20419 0.95528 0.96053 0.96467 1.21756 0.97233 0.98018 0.93872 0.89945 1.22144 1.01441 0.93483 0.99088 1.24087 1.04586 0.99649 0.92708 1.87880 1.65568 1.39725 1.17144 1.24267 0.99148 0.97804 0.97377 1.20526 0.98376 0.92771 0.99817 1.21313 0.99333 0.96753 1.00987 0.90831 0.89169 0.89689 0.92494 0.92772 0.91029 0.90732 0.88392 0.89661 0.89215 0.87615 0.89677 0.86551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.42 10.95 55.55 0.61 -19.81 16 2 C 0.08 1.92 5.14 -17.34 -0.09 1.83 16 3 Si 0.91 18.58 29.59 -169.99 -5.03 13.55 16 4 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 5 H -0.28 -5.55 7.11 56.52 0.40 -5.14 16 6 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 7 C -0.46 -12.27 9.05 -37.74 -0.34 -12.62 16 8 H 0.08 1.94 7.91 -52.49 -0.41 1.53 16 9 C 0.11 2.89 5.58 -106.82 -0.60 2.29 16 10 C -0.23 -5.45 9.80 -38.87 -0.38 -5.83 16 11 C -0.09 -1.84 8.68 -39.66 -0.34 -2.18 16 12 C -0.22 -4.38 4.85 -104.33 -0.51 -4.89 16 13 C -0.05 -0.73 4.33 -27.89 -0.12 -0.85 16 14 C -0.09 -1.29 2.65 -90.30 -0.24 -1.53 16 15 H 0.08 1.33 8.13 -51.93 -0.42 0.91 16 16 C -0.12 -1.43 5.98 -26.41 -0.16 -1.58 16 17 C -0.06 -0.70 7.46 37.82 0.28 -0.41 16 18 S -0.33 -4.83 23.26 -107.50 -2.50 -7.33 16 19 C -0.04 -0.59 5.75 37.82 0.22 -0.37 16 20 C -0.10 -2.16 9.67 -39.66 -0.38 -2.55 16 21 C -0.16 -4.20 8.70 -38.87 -0.34 -4.53 16 22 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 23 H 0.09 2.07 8.06 -52.48 -0.42 1.65 16 24 H 0.08 1.59 7.20 -52.49 -0.38 1.22 16 25 H 0.06 0.85 8.03 -51.93 -0.42 0.43 16 26 H 0.05 0.81 7.98 -51.93 -0.41 0.39 16 27 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.07 0.78 7.49 -51.93 -0.39 0.39 16 29 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.09 1.36 6.70 -51.93 -0.35 1.02 16 32 H 0.11 1.81 8.14 -51.93 -0.42 1.38 16 33 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 34 H 0.12 3.09 6.15 -52.49 -0.32 2.76 16 LS Contribution 289.33 15.07 4.36 4.36 Total: -1.00 -26.63 289.33 -10.34 -36.97 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -4.78 Total: 5.49 kcal Atomic # 6 Polarization: -30.23 SS G_CDS: -3.00 Total: -33.23 kcal Atomic # 7 Polarization: -20.42 SS G_CDS: 0.61 Total: -19.81 kcal Atomic # 14 Polarization: 18.58 SS G_CDS: -5.03 Total: 13.55 kcal Atomic # 16 Polarization: -4.83 SS G_CDS: -2.50 Total: -7.33 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -26.63 -10.34 -36.97 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260405165.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.963 kcal (2) G-P(sol) polarization free energy of solvation -26.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds