Wall clock time and date at job start Mon Mar 30 2020 06:22:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86794 * 120.00053 * 2 1 4 4 H 1.48502 * 109.47172 * 239.99484 * 3 2 1 5 5 H 1.48505 * 109.47260 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47370 * 119.99567 * 3 2 1 7 7 C 1.39948 * 119.99953 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99810 * 197.86883 * 7 2 1 9 9 C 1.41395 * 119.99925 * 17.87379 * 7 2 1 10 10 C 1.40711 * 120.24754 * 204.39345 * 9 7 2 11 11 C 1.37620 * 119.74973 * 179.97438 * 10 9 7 12 12 C 1.38634 * 120.24628 * 0.02562 * 11 10 9 13 13 C 1.50692 * 119.75158 * 179.97438 * 12 11 10 14 14 C 1.53004 * 109.47455 * 89.99660 * 13 12 11 15 15 H 1.09001 * 108.82769 * 54.29753 * 14 13 12 16 16 C 1.52334 * 108.86989 * 172.83065 * 14 13 12 17 17 C 1.54265 * 112.58274 * 120.82111 * 16 14 13 18 18 S 1.83951 * 102.58345 * 24.52816 * 17 16 14 19 19 C 1.54263 * 108.86840 * 295.77420 * 14 13 12 20 20 C 1.38639 * 120.50068 * 359.97438 * 12 11 10 21 21 C 1.37620 * 120.25160 * 0.02562 * 20 12 11 22 22 H 0.97003 * 119.99746 * 0.02562 * 1 2 3 23 23 H 1.08010 * 120.12386 * 359.95959 * 10 9 7 24 24 H 1.07998 * 119.87502 * 179.72457 * 11 10 9 25 25 H 1.08994 * 109.47321 * 210.00038 * 13 12 11 26 26 H 1.08999 * 109.46877 * 329.99922 * 13 12 11 27 27 H 1.08999 * 108.86565 * 241.63705 * 16 14 13 28 28 H 1.08997 * 108.86749 * 0.14903 * 16 14 13 29 29 H 1.09001 * 110.78261 * 142.80460 * 17 16 14 30 30 H 1.08999 * 110.78369 * 266.06010 * 17 16 14 31 31 H 1.09002 * 110.78166 * 332.92124 * 19 14 13 32 32 H 1.08999 * 110.79049 * 96.37274 * 19 14 13 33 33 H 1.07999 * 119.87727 * 180.02562 * 20 12 11 34 34 H 1.07990 * 120.13095 * 180.02562 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0961 1.6963 -1.2124 5 1 1.2772 2.7465 -0.0006 6 1 3.0959 1.6964 1.2126 7 6 2.0079 -1.2120 0.0005 8 1 3.0488 -1.2344 0.2875 9 6 1.3521 -2.4071 -0.3748 10 6 1.8255 -3.6499 0.0851 11 6 1.1790 -4.8067 -0.2861 12 6 0.0657 -4.7508 -1.1103 13 6 -0.6333 -6.0244 -1.5104 14 6 -1.7226 -6.3516 -0.4869 15 1 -2.3812 -5.4889 -0.3862 16 6 -2.5356 -7.5357 -0.9942 17 6 -2.5035 -8.7352 -0.0247 18 16 -2.1402 -7.9349 1.5912 19 6 -1.0577 -6.6334 0.8764 20 6 -0.4095 -3.5319 -1.5694 21 6 0.2211 -2.3624 -1.2109 22 1 -0.4850 0.8401 -0.0004 23 1 2.6931 -3.6957 0.7267 24 1 1.5432 -5.7619 0.0620 25 1 -1.0854 -5.8973 -2.4939 26 1 0.0892 -6.8398 -1.5452 27 1 -3.5700 -7.2204 -1.1307 28 1 -2.1343 -7.8523 -1.9568 29 1 -3.4705 -9.2377 0.0011 30 1 -1.7136 -9.4340 -0.3000 31 1 -0.0420 -7.0053 0.7418 32 1 -1.0642 -5.7407 1.5018 33 1 -1.2779 -3.5000 -2.2107 34 1 -0.1509 -1.4141 -1.5693 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260405165.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:15 Heat of formation + Delta-G solvation = -17.475945 kcal Electronic energy + Delta-G solvation = -15415.492176 eV Core-core repulsion = 13016.370040 eV Total energy + Delta-G solvation = -2399.122135 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.82060 -37.76158 -35.50671 -32.76121 -31.24101 -30.40131 -28.62933 -26.54613 -24.47781 -22.85734 -21.74179 -20.58426 -19.20475 -17.52519 -17.26125 -16.71285 -15.97842 -15.66927 -15.37974 -14.91785 -14.64937 -14.28894 -13.89623 -13.73195 -13.45397 -13.13975 -12.91504 -12.79679 -12.72379 -12.56689 -12.18124 -12.07893 -11.93096 -11.45046 -11.28429 -11.16310 -10.98157 -10.73698 -9.32806 -9.14660 -8.74861 -8.63060 -6.31667 0.95686 1.00266 1.17325 1.36482 1.41992 1.47535 1.53263 2.20138 2.72429 3.60339 3.69922 3.93836 4.00646 4.17548 4.30638 4.42873 4.47318 4.57830 4.65114 4.72806 4.79009 4.91585 4.96799 5.07947 5.13283 5.17456 5.26730 5.33890 5.46084 5.50376 5.73484 6.02563 6.12383 6.28476 6.42345 6.73150 6.96099 7.06669 8.33704 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.044810 B = 0.004711 C = 0.004647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.705688 B = 5942.149882 C = 6024.404262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.036 3.964 3 Si 0.979 3.021 4 H -0.261 1.261 5 H -0.267 1.267 6 H -0.260 1.260 7 C -0.507 4.507 8 H 0.072 0.928 9 C 0.074 3.926 10 C -0.244 4.244 11 C -0.086 4.086 12 C -0.196 4.196 13 C -0.042 4.042 14 C -0.082 4.082 15 H 0.062 0.938 16 C -0.118 4.118 17 C -0.046 4.046 18 S -0.372 6.372 19 C -0.036 4.036 20 C -0.103 4.103 21 C -0.190 4.190 22 H 0.287 0.713 23 H 0.091 0.909 24 H 0.116 0.884 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.080 0.920 28 H 0.098 0.902 29 H 0.119 0.881 30 H 0.103 0.897 31 H 0.093 0.907 32 H 0.078 0.922 33 H 0.106 0.894 34 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.273 -11.516 -3.414 12.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.178 4.178 3 Si 0.800 3.200 4 H -0.185 1.185 5 H -0.191 1.191 6 H -0.185 1.185 7 C -0.537 4.537 8 H 0.090 0.910 9 C 0.072 3.928 10 C -0.264 4.264 11 C -0.104 4.104 12 C -0.197 4.197 13 C -0.080 4.080 14 C -0.103 4.103 15 H 0.081 0.919 16 C -0.157 4.157 17 C -0.193 4.193 18 S -0.146 6.146 19 C -0.184 4.184 20 C -0.122 4.122 21 C -0.210 4.210 22 H 0.097 0.903 23 H 0.109 0.891 24 H 0.134 0.866 25 H 0.094 0.906 26 H 0.093 0.907 27 H 0.099 0.901 28 H 0.116 0.884 29 H 0.137 0.863 30 H 0.121 0.879 31 H 0.111 0.889 32 H 0.096 0.904 33 H 0.124 0.876 34 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -4.853 -11.626 -2.230 12.794 hybrid contribution 0.792 1.509 -0.657 1.827 sum -4.061 -10.117 -2.888 11.277 Atomic orbital electron populations 1.69876 1.08973 1.30447 1.36152 1.26716 0.95462 1.04408 0.91261 0.85298 0.78838 0.75829 0.80014 1.18495 1.19133 1.18477 1.19807 0.98295 0.92823 1.42744 0.91032 1.17953 0.92180 0.93041 0.89586 1.21184 1.04314 0.93493 1.07387 1.20702 0.95582 0.96548 0.97583 1.19514 0.99838 0.94514 1.05882 1.20477 0.96055 0.93920 0.97565 1.21689 0.96664 0.98980 0.92936 0.91935 1.22072 1.01497 0.92251 0.99873 1.24246 1.06379 0.99453 0.89260 1.88068 1.65629 1.40169 1.20750 1.24149 0.99658 0.97017 0.97565 1.20828 0.98734 0.92662 0.99927 1.21287 1.00229 0.97222 1.02255 0.90264 0.89077 0.86628 0.90636 0.90670 0.90090 0.88352 0.86263 0.87885 0.88856 0.90379 0.87576 0.88545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.34 10.95 21.83 0.24 -44.10 16 2 C 0.04 1.85 5.14 85.26 0.44 2.29 16 3 Si 0.98 39.04 29.59 68.60 2.03 41.07 16 4 H -0.26 -10.14 7.11 99.48 0.71 -9.44 16 5 H -0.27 -10.03 7.11 99.48 0.71 -9.32 16 6 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 7 C -0.51 -28.09 9.05 23.46 0.21 -27.88 16 8 H 0.07 3.84 7.91 -2.91 -0.02 3.82 16 9 C 0.07 4.08 5.58 -21.29 -0.12 3.97 16 10 C -0.24 -12.02 9.80 22.73 0.22 -11.80 16 11 C -0.09 -3.58 8.68 22.22 0.19 -3.38 16 12 C -0.20 -7.66 4.85 -19.68 -0.10 -7.76 16 13 C -0.04 -1.17 4.33 29.85 0.13 -1.04 16 14 C -0.08 -2.17 2.65 -10.58 -0.03 -2.19 16 15 H 0.06 1.91 8.13 -2.39 -0.02 1.89 16 16 C -0.12 -2.22 5.98 30.80 0.18 -2.04 16 17 C -0.05 -0.83 7.46 72.41 0.54 -0.29 16 18 S -0.37 -10.22 23.26 -56.49 -1.31 -11.53 16 19 C -0.04 -1.05 5.75 72.41 0.42 -0.64 16 20 C -0.10 -4.61 9.67 22.22 0.21 -4.39 16 21 C -0.19 -10.06 8.70 22.73 0.20 -9.87 16 22 H 0.29 13.92 8.30 -92.71 -0.77 13.15 16 23 H 0.09 4.32 8.06 -2.91 -0.02 4.29 16 24 H 0.12 4.05 7.20 -2.91 -0.02 4.03 16 25 H 0.08 1.90 8.03 -2.39 -0.02 1.89 16 26 H 0.07 1.86 7.98 -2.39 -0.02 1.84 16 27 H 0.08 1.42 8.14 -2.39 -0.02 1.41 16 28 H 0.10 1.47 7.49 -2.39 -0.02 1.45 16 29 H 0.12 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.09 2.62 6.70 -2.39 -0.02 2.60 16 32 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 33 H 0.11 4.20 8.06 -2.91 -0.02 4.17 16 34 H 0.10 5.39 6.15 -2.92 -0.02 5.37 16 Total: -1.00 -60.39 289.33 4.53 -55.86 By element: Atomic # 1 Polarization: 22.65 SS G_CDS: 1.07 Total: 23.72 kcal Atomic # 6 Polarization: -67.52 SS G_CDS: 2.51 Total: -65.02 kcal Atomic # 7 Polarization: -44.34 SS G_CDS: 0.24 Total: -44.10 kcal Atomic # 14 Polarization: 39.04 SS G_CDS: 2.03 Total: 41.07 kcal Atomic # 16 Polarization: -10.22 SS G_CDS: -1.31 Total: -11.53 kcal Total: -60.39 4.53 -55.86 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260405165.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.384 kcal (2) G-P(sol) polarization free energy of solvation -60.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds