Wall clock time and date at job start Mon Mar 30 2020 05:47:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35950 * 116.99607 * 2 1 4 4 C 1.37961 * 119.96121 * 359.72706 * 3 2 1 5 5 C 1.38787 * 120.12186 * 179.81025 * 4 3 2 6 6 C 1.36098 * 120.63252 * 0.44907 * 5 4 3 7 7 C 1.41282 * 120.56346 * 359.78285 * 6 5 4 8 8 C 1.45383 * 129.29502 * 180.02562 * 7 6 5 9 9 C 1.50697 * 122.55926 * 359.97438 * 8 7 6 10 10 C 1.50701 * 109.46974 * 85.00137 * 9 8 7 11 11 H 1.08001 * 120.00109 * 0.02562 * 10 9 8 12 12 C 1.37874 * 120.00025 * 180.02562 * 10 9 8 13 13 N 1.31516 * 120.00095 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 120.00091 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47263 * 89.99559 * 14 12 10 16 16 H 1.48497 * 109.47320 * 209.99553 * 14 12 10 17 17 H 1.48504 * 109.47237 * 329.99372 * 14 12 10 18 18 C 1.31861 * 114.88861 * 180.02562 * 8 7 6 19 19 S 1.75311 * 111.36729 * 359.97438 * 18 8 7 20 20 C 1.39609 * 118.85791 * 0.02562 * 7 6 5 21 21 H 1.09002 * 109.47382 * 59.99931 * 1 2 3 22 22 H 1.09001 * 109.46938 * 299.99918 * 1 2 3 23 23 H 1.09004 * 109.46926 * 180.02562 * 1 2 3 24 24 H 1.07999 * 119.93562 * 0.02562 * 4 3 2 25 25 H 1.07995 * 119.68572 * 180.21121 * 5 4 3 26 26 H 1.08007 * 119.71663 * 179.76725 * 6 5 4 27 27 H 1.08996 * 109.47581 * 205.00034 * 9 8 7 28 28 H 1.09005 * 109.46796 * 325.00354 * 9 8 7 29 29 H 0.97003 * 120.00095 * 179.97438 * 13 12 10 30 30 H 1.07996 * 124.31475 * 180.02562 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2114 0.0000 4 6 1.2939 2.3678 -0.0057 5 6 1.9204 3.6062 -0.0017 6 6 3.2784 3.6964 -0.0014 7 6 4.0758 2.5301 -0.0005 8 6 5.5243 2.4051 0.0005 9 6 6.4415 3.6008 0.0001 10 6 6.6481 4.0758 1.4153 11 1 6.1640 3.5629 2.2332 12 6 7.4552 5.1652 1.6659 13 7 8.0451 5.7895 0.6700 14 14 7.7119 5.7536 3.4201 15 1 8.8869 5.0611 4.0075 16 1 7.9499 7.2193 3.4208 17 1 6.5030 5.4480 4.2266 18 6 5.9743 1.1657 0.0007 19 16 4.6577 0.0081 0.0004 20 6 3.4468 1.2838 -0.0005 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 0.2155 2.3093 -0.0097 25 1 1.3247 4.5070 -0.0028 26 1 3.7505 4.6678 -0.0021 27 1 7.4019 3.3219 -0.4334 28 1 5.9950 4.4010 -0.5902 29 1 8.6126 6.5562 0.8462 30 1 7.0205 0.8978 0.0018 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260435286.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:19 Heat of formation + Delta-G solvation = -3.198725 kcal Electronic energy + Delta-G solvation = -15148.021422 eV Core-core repulsion = 12613.685299 eV Total energy + Delta-G solvation = -2534.336123 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.94175 -37.89345 -34.99878 -32.72811 -30.44257 -29.07515 -27.94134 -26.91232 -23.70585 -22.26469 -21.92323 -19.09449 -17.89465 -16.44548 -16.31228 -15.76717 -15.70858 -14.92624 -14.54933 -14.29297 -13.72236 -13.19478 -12.61698 -12.30523 -12.20850 -12.06332 -11.48328 -11.33945 -11.12380 -11.02646 -10.66848 -10.52336 -10.50923 -10.23398 -9.57333 -9.45146 -8.49658 -8.43841 -8.08058 -6.92112 -6.05868 -4.10169 1.20198 1.67173 2.10296 2.64014 2.96573 3.29687 3.32075 3.36188 3.41115 4.14321 4.44164 4.93684 5.04096 5.08995 5.22296 5.28520 5.35891 5.43919 5.61520 5.77949 5.93549 6.29392 6.39889 6.48071 6.74520 6.90664 7.02525 7.12222 7.48651 7.50352 7.71555 7.89427 8.28154 8.94515 9.53829 11.03297 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.029945 B = 0.006388 C = 0.005794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.817884 B = 4382.505008 C = 4831.714260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.318 6.318 3 C 0.151 3.849 4 C -0.208 4.208 5 C -0.095 4.095 6 C -0.094 4.094 7 C -0.021 4.021 8 C -0.042 4.042 9 C 0.068 3.932 10 C -0.511 4.511 11 H 0.057 0.943 12 C 0.060 3.940 13 N -0.894 5.894 14 Si 0.894 3.106 15 H -0.280 1.280 16 H -0.286 1.286 17 H -0.273 1.273 18 C -0.212 4.212 19 S 0.052 5.948 20 C -0.163 4.163 21 H 0.054 0.946 22 H 0.054 0.946 23 H 0.096 0.904 24 H 0.127 0.873 25 H 0.125 0.875 26 H 0.136 0.864 27 H 0.032 0.968 28 H 0.033 0.967 29 H 0.262 0.738 30 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.095 -8.082 -2.263 15.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.232 6.232 3 C 0.102 3.898 4 C -0.229 4.229 5 C -0.116 4.116 6 C -0.114 4.114 7 C -0.031 4.031 8 C -0.052 4.052 9 C 0.029 3.971 10 C -0.549 4.549 11 H 0.075 0.925 12 C -0.141 4.141 13 N -0.533 5.533 14 Si 0.722 3.278 15 H -0.206 1.206 16 H -0.211 1.211 17 H -0.198 1.198 18 C -0.345 4.345 19 S 0.316 5.684 20 C -0.279 4.279 21 H 0.073 0.927 22 H 0.073 0.927 23 H 0.115 0.885 24 H 0.145 0.855 25 H 0.143 0.857 26 H 0.154 0.846 27 H 0.050 0.950 28 H 0.051 0.949 29 H 0.072 0.928 30 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -12.858 -9.760 -2.305 16.307 hybrid contribution 0.035 2.005 1.027 2.253 sum -12.823 -7.755 -1.278 15.040 Atomic orbital electron populations 1.23008 0.78684 1.03572 1.01295 1.86069 1.21086 1.27060 1.88944 1.18054 0.89115 0.84433 0.98156 1.20920 0.99256 0.91978 1.10756 1.20384 0.94422 0.96715 1.00068 1.20837 0.92827 0.98066 0.99642 1.19231 0.92924 0.91531 0.99381 1.20515 0.91724 0.97125 0.95820 1.18117 0.92444 0.88566 0.97950 1.21026 1.28833 1.13207 0.91843 0.92470 1.24977 0.95585 0.96388 0.97188 1.69952 1.31387 1.21122 1.30814 0.86550 0.78667 0.77838 0.84770 1.20570 1.21134 1.19790 1.24801 1.01959 0.95189 1.12544 1.83712 0.95161 1.08681 1.80891 1.21888 0.94066 0.98039 1.13877 0.92732 0.92719 0.88515 0.85481 0.85699 0.84641 0.94962 0.94901 0.92801 0.81951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.81 101.05 0.99 1.28 16 2 O -0.32 -4.77 10.49 -19.58 -0.21 -4.97 16 3 C 0.15 2.55 6.72 -38.93 -0.26 2.29 16 4 C -0.21 -3.05 9.03 -39.48 -0.36 -3.41 16 5 C -0.10 -1.47 9.94 -40.15 -0.40 -1.87 16 6 C -0.09 -1.76 9.76 -39.19 -0.38 -2.15 16 7 C -0.02 -0.44 6.01 -105.39 -0.63 -1.08 16 8 C -0.04 -0.93 5.16 -103.68 -0.54 -1.46 16 9 C 0.07 1.75 5.11 -29.04 -0.15 1.60 16 10 C -0.51 -14.14 9.09 -34.44 -0.31 -14.45 16 11 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 12 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 13 N -0.89 -25.96 13.29 55.43 0.74 -25.22 16 14 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 15 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 16 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 17 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 18 C -0.21 -4.27 10.74 28.83 0.31 -3.96 16 19 S 0.05 0.94 23.22 -107.50 -2.50 -1.56 16 20 C -0.16 -3.15 6.43 -38.31 -0.25 -3.40 16 21 H 0.05 0.46 7.64 -51.93 -0.40 0.06 16 22 H 0.05 0.47 7.66 -51.93 -0.40 0.07 16 23 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.13 1.42 6.26 -52.49 -0.33 1.10 16 25 H 0.13 1.53 8.06 -52.49 -0.42 1.11 16 26 H 0.14 2.60 7.81 -52.48 -0.41 2.19 16 27 H 0.03 0.85 8.09 -51.93 -0.42 0.43 16 28 H 0.03 0.87 7.84 -51.93 -0.41 0.46 16 29 H 0.26 7.20 8.31 -40.82 -0.34 6.87 16 30 H 0.16 3.01 8.06 -52.49 -0.42 2.59 16 LS Contribution 276.72 15.07 4.17 4.17 Total: -1.00 -30.46 276.72 -8.06 -38.52 By element: Atomic # 1 Polarization: 0.88 SS G_CDS: -3.17 Total: -2.29 kcal Atomic # 6 Polarization: -22.96 SS G_CDS: -2.07 Total: -25.03 kcal Atomic # 7 Polarization: -25.96 SS G_CDS: 0.74 Total: -25.22 kcal Atomic # 8 Polarization: -4.77 SS G_CDS: -0.21 Total: -4.97 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: 0.94 SS G_CDS: -2.50 Total: -1.56 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -30.46 -8.06 -38.52 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260435286.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.316 kcal (2) G-P(sol) polarization free energy of solvation -30.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds