Wall clock time and date at job start Mon Mar 30 2020 05:47:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35950 * 116.99607 * 2 1 4 4 C 1.37961 * 119.96121 * 359.72706 * 3 2 1 5 5 C 1.38787 * 120.12186 * 179.81025 * 4 3 2 6 6 C 1.36098 * 120.63252 * 0.44907 * 5 4 3 7 7 C 1.41282 * 120.56346 * 359.78285 * 6 5 4 8 8 C 1.45383 * 129.29502 * 180.02562 * 7 6 5 9 9 C 1.50697 * 122.55926 * 359.97438 * 8 7 6 10 10 C 1.50701 * 109.46974 * 85.00137 * 9 8 7 11 11 H 1.08001 * 120.00109 * 0.02562 * 10 9 8 12 12 C 1.37874 * 120.00025 * 180.02562 * 10 9 8 13 13 N 1.31516 * 120.00095 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 120.00091 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47263 * 89.99559 * 14 12 10 16 16 H 1.48497 * 109.47320 * 209.99553 * 14 12 10 17 17 H 1.48504 * 109.47237 * 329.99372 * 14 12 10 18 18 C 1.31861 * 114.88861 * 180.02562 * 8 7 6 19 19 S 1.75311 * 111.36729 * 359.97438 * 18 8 7 20 20 C 1.39609 * 118.85791 * 0.02562 * 7 6 5 21 21 H 1.09002 * 109.47382 * 59.99931 * 1 2 3 22 22 H 1.09001 * 109.46938 * 299.99918 * 1 2 3 23 23 H 1.09004 * 109.46926 * 180.02562 * 1 2 3 24 24 H 1.07999 * 119.93562 * 0.02562 * 4 3 2 25 25 H 1.07995 * 119.68572 * 180.21121 * 5 4 3 26 26 H 1.08007 * 119.71663 * 179.76725 * 6 5 4 27 27 H 1.08996 * 109.47581 * 205.00034 * 9 8 7 28 28 H 1.09005 * 109.46796 * 325.00354 * 9 8 7 29 29 H 0.97003 * 120.00095 * 179.97438 * 13 12 10 30 30 H 1.07996 * 124.31475 * 180.02562 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2114 0.0000 4 6 1.2939 2.3678 -0.0057 5 6 1.9204 3.6062 -0.0017 6 6 3.2784 3.6964 -0.0014 7 6 4.0758 2.5301 -0.0005 8 6 5.5243 2.4051 0.0005 9 6 6.4415 3.6008 0.0001 10 6 6.6481 4.0758 1.4153 11 1 6.1640 3.5629 2.2332 12 6 7.4552 5.1652 1.6659 13 7 8.0451 5.7895 0.6700 14 14 7.7119 5.7536 3.4201 15 1 8.8869 5.0611 4.0075 16 1 7.9499 7.2193 3.4208 17 1 6.5030 5.4480 4.2266 18 6 5.9743 1.1657 0.0007 19 16 4.6577 0.0081 0.0004 20 6 3.4468 1.2838 -0.0005 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 0.2155 2.3093 -0.0097 25 1 1.3247 4.5070 -0.0028 26 1 3.7505 4.6678 -0.0021 27 1 7.4019 3.3219 -0.4334 28 1 5.9950 4.4010 -0.5902 29 1 8.6126 6.5562 0.8462 30 1 7.0205 0.8978 0.0018 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260435286.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:19 Heat of formation + Delta-G solvation = -20.502978 kcal Electronic energy + Delta-G solvation = -15148.771791 eV Core-core repulsion = 12613.685299 eV Total energy + Delta-G solvation = -2535.086492 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.17641 -39.19813 -36.53076 -34.74682 -31.86210 -30.50220 -29.59798 -27.97206 -25.61475 -23.76499 -23.25401 -20.51142 -19.31581 -18.48948 -17.68548 -17.08659 -16.70218 -16.47970 -16.24473 -15.62118 -15.07988 -14.74202 -14.21381 -13.96893 -13.66399 -13.45670 -13.00266 -12.94171 -12.51976 -12.49082 -12.39339 -12.18329 -11.83409 -11.78035 -11.47440 -11.35510 -10.60507 -9.94064 -9.47859 -8.40234 -8.14023 -6.33073 -0.21259 0.34050 0.67714 1.10304 1.37281 1.40217 1.44954 1.53233 2.28575 2.40820 2.77440 3.10669 3.73240 3.96973 4.06833 4.21530 4.41763 4.44502 4.44828 4.52703 4.76217 4.79810 4.99358 5.05226 5.16631 5.29174 5.46787 5.52568 5.70794 5.74100 5.87389 6.16207 6.37207 6.77218 7.35058 8.88949 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.029945 B = 0.006388 C = 0.005794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.817884 B = 4382.505008 C = 4831.714260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.334 6.334 3 C 0.150 3.850 4 C -0.194 4.194 5 C -0.078 4.078 6 C -0.125 4.125 7 C -0.050 4.050 8 C -0.072 4.072 9 C 0.080 3.920 10 C -0.525 4.525 11 H 0.049 0.951 12 C 0.011 3.989 13 N -0.927 5.927 14 Si 0.962 3.038 15 H -0.272 1.272 16 H -0.277 1.277 17 H -0.269 1.269 18 C -0.216 4.216 19 S 0.093 5.907 20 C -0.190 4.190 21 H 0.071 0.929 22 H 0.069 0.931 23 H 0.120 0.880 24 H 0.172 0.828 25 H 0.162 0.838 26 H 0.116 0.884 27 H 0.009 0.991 28 H 0.010 0.990 29 H 0.266 0.734 30 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.790 -8.833 -1.344 18.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.248 6.248 3 C 0.101 3.899 4 C -0.215 4.215 5 C -0.098 4.098 6 C -0.145 4.145 7 C -0.058 4.058 8 C -0.083 4.083 9 C 0.041 3.959 10 C -0.563 4.563 11 H 0.067 0.933 12 C -0.188 4.188 13 N -0.567 5.567 14 Si 0.786 3.214 15 H -0.198 1.198 16 H -0.202 1.202 17 H -0.193 1.193 18 C -0.349 4.349 19 S 0.357 5.643 20 C -0.305 4.305 21 H 0.090 0.910 22 H 0.087 0.913 23 H 0.139 0.861 24 H 0.190 0.810 25 H 0.180 0.820 26 H 0.134 0.866 27 H 0.027 0.973 28 H 0.028 0.972 29 H 0.075 0.925 30 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -15.572 -10.526 -1.391 18.847 hybrid contribution 0.717 2.155 0.687 2.373 sum -14.855 -8.371 -0.703 17.066 Atomic orbital electron populations 1.23434 0.75694 1.05838 1.02773 1.86055 1.24109 1.26120 1.88530 1.18206 0.88428 0.85987 0.97324 1.21399 1.01308 0.90592 1.08207 1.20794 0.93070 0.98769 0.97146 1.20879 0.94518 0.96792 1.02358 1.19255 0.92195 0.93119 1.01258 1.20336 0.92719 0.96542 0.98728 1.17789 0.91958 0.89548 0.96590 1.21249 1.28919 1.13557 0.92565 0.93280 1.25824 0.95109 0.96373 1.01475 1.70066 1.31979 1.21624 1.33020 0.85494 0.78736 0.77601 0.79536 1.19769 1.20222 1.19311 1.24988 1.03364 0.95603 1.10917 1.83389 0.93410 1.07055 1.80418 1.22147 0.95722 0.97574 1.15028 0.91038 0.91251 0.86138 0.81040 0.82032 0.86552 0.97275 0.97184 0.92479 0.81321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 113.37 1.11 1.36 16 2 O -0.33 -8.96 10.49 -92.98 -0.98 -9.94 16 3 C 0.15 4.70 6.72 22.69 0.15 4.85 16 4 C -0.19 -4.97 9.03 22.34 0.20 -4.76 16 5 C -0.08 -2.21 9.94 21.90 0.22 -1.99 16 6 C -0.13 -4.79 9.76 22.52 0.22 -4.57 16 7 C -0.05 -2.11 6.01 -20.36 -0.12 -2.24 16 8 C -0.07 -3.39 5.16 -18.84 -0.10 -3.49 16 9 C 0.08 4.38 5.11 29.10 0.15 4.53 16 10 C -0.52 -30.25 9.09 25.60 0.23 -30.01 16 11 H 0.05 2.84 7.74 -2.91 -0.02 2.82 16 12 C 0.01 0.61 5.46 84.65 0.46 1.08 16 13 N -0.93 -55.44 13.29 21.45 0.28 -55.15 16 14 Si 0.96 44.42 29.54 68.60 2.03 46.45 16 15 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 16 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 17 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 18 C -0.22 -8.97 10.74 67.01 0.72 -8.25 16 19 S 0.09 3.35 23.22 -56.49 -1.31 2.04 16 20 C -0.19 -7.22 6.43 23.09 0.15 -7.07 16 21 H 0.07 0.84 7.64 -2.39 -0.02 0.82 16 22 H 0.07 0.85 7.66 -2.39 -0.02 0.83 16 23 H 0.12 1.22 8.14 -2.38 -0.02 1.20 16 24 H 0.17 2.82 6.26 -2.91 -0.02 2.81 16 25 H 0.16 3.34 8.06 -2.91 -0.02 3.32 16 26 H 0.12 4.74 7.81 -2.91 -0.02 4.72 16 27 H 0.01 0.51 8.09 -2.39 -0.02 0.49 16 28 H 0.01 0.57 7.84 -2.38 -0.02 0.55 16 29 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 30 H 0.17 6.51 8.06 -2.91 -0.02 6.49 16 Total: -1.00 -68.05 276.72 4.57 -63.48 By element: Atomic # 1 Polarization: 2.54 SS G_CDS: 1.15 Total: 3.69 kcal Atomic # 6 Polarization: -53.96 SS G_CDS: 3.40 Total: -50.56 kcal Atomic # 7 Polarization: -55.44 SS G_CDS: 0.28 Total: -55.15 kcal Atomic # 8 Polarization: -8.96 SS G_CDS: -0.98 Total: -9.94 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Atomic # 16 Polarization: 3.35 SS G_CDS: -1.31 Total: 2.04 kcal Total: -68.05 4.57 -63.48 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260435286.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.981 kcal (2) G-P(sol) polarization free energy of solvation -68.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds