Wall clock time and date at job start Mon Mar 30 2020 05:54:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31157 * 1 3 3 Si 1.86801 * 119.99587 * 2 1 4 4 H 1.48494 * 109.47187 * 269.99660 * 3 2 1 5 5 H 1.48500 * 109.47494 * 30.00263 * 3 2 1 6 6 H 1.48504 * 109.46716 * 149.99969 * 3 2 1 7 7 C 1.39677 * 120.00190 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99788 * 192.19624 * 7 2 1 9 9 C 1.40839 * 119.99639 * 12.19824 * 7 2 1 10 10 C 1.41101 * 128.82451 * 39.47042 * 9 7 2 11 11 N 1.36972 * 127.10594 * 359.97438 * 10 9 7 12 12 O 1.34071 * 105.78803 * 180.02562 * 10 9 7 13 13 N 1.20521 * 113.48903 * 359.73889 * 12 10 9 14 14 C 1.30905 * 113.08599 * 0.44275 * 13 12 10 15 15 C 1.48183 * 127.36032 * 179.84724 * 14 13 12 16 16 C 1.39443 * 120.14283 * 185.77085 * 15 14 13 17 17 C 1.37956 * 119.89315 * 179.97438 * 16 15 14 18 18 C 1.38392 * 120.18378 * 359.97438 * 17 16 15 19 19 C 1.38256 * 120.29803 * 359.72523 * 18 17 16 20 20 C 1.38274 * 120.09898 * 0.55661 * 19 18 17 21 21 F 1.35097 * 120.09729 * 179.72212 * 20 19 18 22 22 H 0.97000 * 119.99998 * 4.96560 * 1 2 3 23 23 H 0.96997 * 120.00109 * 12.53701 * 11 10 9 24 24 H 0.97000 * 119.99455 * 192.54132 * 11 10 9 25 25 H 1.07995 * 120.05328 * 0.02562 * 16 15 14 26 26 H 1.08000 * 119.90578 * 179.97438 * 17 16 15 27 27 H 1.08004 * 119.85270 * 180.02562 * 18 17 16 28 28 H 1.07999 * 119.95083 * 180.29921 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3116 0.0000 0.0000 3 14 2.2455 1.6178 0.0000 4 1 2.4930 2.0465 -1.4000 5 1 1.4429 2.6527 0.7001 6 1 3.5430 1.4402 0.7001 7 6 2.0100 -1.2096 0.0005 8 1 3.0716 -1.2200 0.1981 9 6 1.3296 -2.4156 -0.2566 10 6 0.3035 -2.6706 -1.1911 11 7 -0.2596 -1.7779 -2.0641 12 8 -0.0071 -3.9668 -1.0471 13 7 0.6479 -4.5271 -0.2047 14 6 1.5092 -3.7373 0.3852 15 6 2.4642 -4.0922 1.4612 16 6 3.2350 -3.1013 2.0682 17 6 4.1221 -3.4373 3.0698 18 6 4.2486 -4.7549 3.4741 19 6 3.4837 -5.7427 2.8819 20 6 2.5951 -5.4202 1.8728 21 9 1.8518 -6.3862 1.2903 22 1 -0.4850 0.8369 -0.0727 23 1 0.1587 -0.9155 -2.2130 24 1 -1.0767 -2.0081 -2.5333 25 1 3.1370 -2.0723 1.7553 26 1 4.7195 -2.6701 3.5398 27 1 4.9445 -5.0119 4.2590 28 1 3.5835 -6.7683 3.2051 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260470407.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:56 Heat of formation + Delta-G solvation = 34.582807 kcal Electronic energy + Delta-G solvation = -17537.615236 eV Core-core repulsion = 14470.997018 eV Total energy + Delta-G solvation = -3066.618218 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 248.070 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -48.16328 -42.74652 -38.27610 -34.69183 -33.23194 -32.17409 -30.15120 -29.38909 -28.43451 -25.64327 -22.99675 -22.14928 -20.80542 -19.56096 -17.33367 -16.91818 -16.51513 -16.07070 -15.65324 -15.09393 -14.98694 -14.87902 -14.76594 -13.69889 -13.51992 -12.59867 -12.56816 -12.26324 -11.90896 -11.56495 -11.29875 -11.24435 -10.82221 -10.50571 -10.08437 -9.97690 -9.75888 -9.39156 -8.93996 -8.32541 -7.56804 -6.68093 -6.30160 -4.19051 1.46246 1.72737 3.00569 3.13810 3.15758 3.31804 3.80277 4.03229 4.21080 4.40169 4.78917 5.05707 5.15031 5.20968 5.37422 5.63970 5.84412 5.93249 6.26042 6.39249 6.54388 6.71925 6.88042 6.98603 7.06762 7.24049 7.38345 7.49559 8.30363 8.58743 8.79051 8.89233 8.98272 10.03408 10.45016 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.021953 B = 0.009400 C = 0.006753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.123649 B = 2978.161299 C = 4145.175436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.066 3.934 3 Si 0.900 3.100 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.265 1.265 7 C -0.441 4.441 8 H 0.078 0.922 9 C -0.039 4.039 10 C 0.145 3.855 11 N -0.801 5.801 12 O 0.059 5.941 13 N -0.394 5.394 14 C -0.008 4.008 15 C -0.005 4.005 16 C -0.078 4.078 17 C -0.137 4.137 18 C -0.109 4.109 19 C -0.165 4.165 20 C 0.097 3.903 21 F -0.131 7.131 22 H 0.272 0.728 23 H 0.415 0.585 24 H 0.380 0.620 25 H 0.161 0.839 26 H 0.125 0.875 27 H 0.123 0.877 28 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.808 -1.846 2.162 5.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.189 1.189 7 C -0.475 4.475 8 H 0.096 0.904 9 C -0.052 4.052 10 C -0.021 4.021 11 N -0.355 5.355 12 O -0.001 6.001 13 N -0.108 5.108 14 C -0.159 4.159 15 C -0.007 4.007 16 C -0.097 4.097 17 C -0.155 4.155 18 C -0.128 4.128 19 C -0.183 4.183 20 C 0.077 3.923 21 F -0.109 7.109 22 H 0.083 0.917 23 H 0.249 0.751 24 H 0.206 0.794 25 H 0.178 0.822 26 H 0.143 0.857 27 H 0.141 0.859 28 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 4.322 -3.125 2.416 5.855 hybrid contribution 0.178 1.680 -0.244 1.707 sum 4.500 -1.444 2.172 5.201 Atomic orbital electron populations 1.69972 1.06603 1.28391 1.40185 1.25648 0.94771 1.00019 0.94140 0.86428 0.80325 0.81770 0.78881 1.19901 1.20802 1.18938 1.18168 0.94878 0.88691 1.45717 0.90439 1.18653 1.00112 0.91962 0.94431 1.20825 1.02235 0.81799 0.97263 1.40097 1.29633 1.17361 1.48415 1.84185 1.50620 1.19894 1.45403 1.73532 1.10344 1.19946 1.06951 1.22429 0.99639 0.94132 0.99738 1.17877 0.96402 0.91005 0.95415 1.21784 0.92864 1.01229 0.93785 1.21116 0.99844 0.96173 0.98342 1.20898 0.99256 0.92766 0.99887 1.20906 0.98764 1.00532 0.98142 1.17870 0.93790 0.85346 0.95340 1.91501 1.74816 1.61617 1.83012 0.91736 0.75092 0.79368 0.82174 0.85710 0.85881 0.85492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -20.28 11.10 55.54 0.62 -19.66 15 2 C 0.07 1.58 4.77 -17.30 -0.08 1.50 15 3 Si 0.90 18.03 29.58 -169.99 -5.03 13.00 15 4 H -0.27 -5.39 7.11 56.52 0.40 -4.99 15 5 H -0.28 -5.72 7.11 56.52 0.40 -5.32 15 6 H -0.27 -5.26 7.11 56.52 0.40 -4.86 15 7 C -0.44 -11.02 7.63 -38.06 -0.29 -11.31 15 8 H 0.08 1.86 6.52 -52.49 -0.34 1.52 15 9 C -0.04 -1.02 5.81 -103.82 -0.60 -1.62 15 10 C 0.14 3.57 8.24 -14.17 -0.12 3.45 15 11 N -0.80 -16.60 8.03 31.43 0.25 -16.35 15 12 O 0.06 1.49 11.06 17.20 0.19 1.68 15 13 N -0.39 -10.23 10.77 34.77 0.37 -9.86 15 14 C -0.01 -0.20 7.23 -80.17 -0.58 -0.78 15 15 C -0.01 -0.11 5.88 -104.84 -0.62 -0.73 15 16 C -0.08 -1.54 9.52 -39.24 -0.37 -1.91 15 17 C -0.14 -2.16 10.03 -39.63 -0.40 -2.56 15 18 C -0.11 -1.59 10.04 -39.52 -0.40 -1.99 15 19 C -0.16 -2.69 10.02 -39.56 -0.40 -3.09 15 20 C 0.10 1.99 7.28 -39.04 -0.28 1.71 15 21 F -0.13 -2.88 15.90 2.25 0.04 -2.84 15 22 H 0.27 6.26 8.31 -40.82 -0.34 5.92 15 23 H 0.42 8.57 7.44 -40.82 -0.30 8.27 15 24 H 0.38 6.64 8.95 -40.82 -0.37 6.27 15 25 H 0.16 3.34 4.75 -52.49 -0.25 3.09 15 26 H 0.12 1.59 8.06 -52.49 -0.42 1.17 15 27 H 0.12 1.34 8.06 -52.48 -0.42 0.92 15 28 H 0.13 1.72 8.06 -52.49 -0.42 1.30 15 LS Contribution 254.35 15.07 3.83 3.83 Total: -1.00 -28.71 254.35 -5.53 -34.23 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: -1.66 Total: 13.29 kcal Atomic # 6 Polarization: -13.19 SS G_CDS: -4.14 Total: -17.33 kcal Atomic # 7 Polarization: -47.11 SS G_CDS: 1.24 Total: -45.87 kcal Atomic # 8 Polarization: 1.49 SS G_CDS: 0.19 Total: 1.68 kcal Atomic # 9 Polarization: -2.88 SS G_CDS: 0.04 Total: -2.84 kcal Atomic # 14 Polarization: 18.03 SS G_CDS: -5.03 Total: 13.00 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -28.71 -5.53 -34.23 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260470407.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.815 kcal (2) G-P(sol) polarization free energy of solvation -28.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds