Wall clock time and date at job start Mon Mar 30 2020 05:54:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31157 * 1 3 3 Si 1.86801 * 119.99587 * 2 1 4 4 H 1.48494 * 109.47187 * 269.99660 * 3 2 1 5 5 H 1.48500 * 109.47494 * 30.00263 * 3 2 1 6 6 H 1.48504 * 109.46716 * 149.99969 * 3 2 1 7 7 C 1.39677 * 120.00190 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99788 * 192.19624 * 7 2 1 9 9 C 1.40839 * 119.99639 * 12.19824 * 7 2 1 10 10 C 1.41101 * 128.82451 * 39.47042 * 9 7 2 11 11 N 1.36972 * 127.10594 * 359.97438 * 10 9 7 12 12 O 1.34071 * 105.78803 * 180.02562 * 10 9 7 13 13 N 1.20521 * 113.48903 * 359.73889 * 12 10 9 14 14 C 1.30905 * 113.08599 * 0.44275 * 13 12 10 15 15 C 1.48183 * 127.36032 * 179.84724 * 14 13 12 16 16 C 1.39443 * 120.14283 * 185.77085 * 15 14 13 17 17 C 1.37956 * 119.89315 * 179.97438 * 16 15 14 18 18 C 1.38392 * 120.18378 * 359.97438 * 17 16 15 19 19 C 1.38256 * 120.29803 * 359.72523 * 18 17 16 20 20 C 1.38274 * 120.09898 * 0.55661 * 19 18 17 21 21 F 1.35097 * 120.09729 * 179.72212 * 20 19 18 22 22 H 0.97000 * 119.99998 * 4.96560 * 1 2 3 23 23 H 0.96997 * 120.00109 * 12.53701 * 11 10 9 24 24 H 0.97000 * 119.99455 * 192.54132 * 11 10 9 25 25 H 1.07995 * 120.05328 * 0.02562 * 16 15 14 26 26 H 1.08000 * 119.90578 * 179.97438 * 17 16 15 27 27 H 1.08004 * 119.85270 * 180.02562 * 18 17 16 28 28 H 1.07999 * 119.95083 * 180.29921 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3116 0.0000 0.0000 3 14 2.2455 1.6178 0.0000 4 1 2.4930 2.0465 -1.4000 5 1 1.4429 2.6527 0.7001 6 1 3.5430 1.4402 0.7001 7 6 2.0100 -1.2096 0.0005 8 1 3.0716 -1.2200 0.1981 9 6 1.3296 -2.4156 -0.2566 10 6 0.3035 -2.6706 -1.1911 11 7 -0.2596 -1.7779 -2.0641 12 8 -0.0071 -3.9668 -1.0471 13 7 0.6479 -4.5271 -0.2047 14 6 1.5092 -3.7373 0.3852 15 6 2.4642 -4.0922 1.4612 16 6 3.2350 -3.1013 2.0682 17 6 4.1221 -3.4373 3.0698 18 6 4.2486 -4.7549 3.4741 19 6 3.4837 -5.7427 2.8819 20 6 2.5951 -5.4202 1.8728 21 9 1.8518 -6.3862 1.2903 22 1 -0.4850 0.8369 -0.0727 23 1 0.1587 -0.9155 -2.2130 24 1 -1.0767 -2.0081 -2.5333 25 1 3.1370 -2.0723 1.7553 26 1 4.7195 -2.6701 3.5398 27 1 4.9445 -5.0119 4.2590 28 1 3.5835 -6.7683 3.2051 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260470407.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:55 Heat of formation + Delta-G solvation = 15.753586 kcal Electronic energy + Delta-G solvation = -17538.431732 eV Core-core repulsion = 14470.997018 eV Total energy + Delta-G solvation = -3067.434714 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 248.070 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.75466 -44.64918 -39.67421 -36.50987 -34.98302 -33.94458 -31.57394 -30.96833 -30.25633 -27.50816 -24.54894 -23.62682 -22.57615 -21.27204 -19.13082 -18.57918 -18.09156 -17.99334 -17.26674 -16.75133 -16.67104 -16.48285 -16.28582 -15.30279 -15.01108 -14.25924 -14.12017 -13.90244 -13.39818 -13.28003 -12.85136 -12.62848 -12.47892 -12.08352 -11.77028 -11.73511 -11.58387 -11.09303 -10.73186 -9.72531 -9.21018 -8.50854 -8.13651 -6.07456 -0.01874 0.34347 1.38720 1.50634 1.54309 1.60409 2.05070 2.32025 2.40508 2.86987 3.21547 3.38490 3.49991 3.83156 4.08107 4.22038 4.43807 4.49721 4.74836 4.89904 5.09046 5.22632 5.28106 5.36684 5.51402 5.59766 5.70579 6.06797 6.43286 6.77653 7.02064 7.10204 7.17622 8.15491 8.66596 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.021953 B = 0.009400 C = 0.006753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.123649 B = 2978.161299 C = 4145.175436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C 0.033 3.967 3 Si 0.972 3.028 4 H -0.265 1.265 5 H -0.283 1.283 6 H -0.261 1.261 7 C -0.460 4.460 8 H 0.078 0.922 9 C -0.076 4.076 10 C 0.137 3.863 11 N -0.785 5.785 12 O 0.047 5.953 13 N -0.418 5.418 14 C -0.018 4.018 15 C -0.051 4.051 16 C -0.092 4.092 17 C -0.125 4.125 18 C -0.083 4.083 19 C -0.154 4.154 20 C 0.070 3.930 21 F -0.149 7.149 22 H 0.278 0.722 23 H 0.417 0.583 24 H 0.396 0.604 25 H 0.143 0.857 26 H 0.164 0.836 27 H 0.178 0.822 28 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.988 -1.273 3.965 8.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.481 5.481 2 C -0.177 4.177 3 Si 0.795 3.205 4 H -0.190 1.190 5 H -0.209 1.209 6 H -0.185 1.185 7 C -0.493 4.493 8 H 0.096 0.904 9 C -0.088 4.088 10 C -0.029 4.029 11 N -0.341 5.341 12 O -0.010 6.010 13 N -0.135 5.135 14 C -0.170 4.170 15 C -0.053 4.053 16 C -0.111 4.111 17 C -0.142 4.142 18 C -0.101 4.101 19 C -0.173 4.173 20 C 0.049 3.951 21 F -0.128 7.128 22 H 0.087 0.913 23 H 0.251 0.749 24 H 0.225 0.775 25 H 0.160 0.840 26 H 0.181 0.819 27 H 0.195 0.805 28 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 6.475 -2.554 4.183 8.121 hybrid contribution -0.435 1.438 -0.701 1.658 sum 6.040 -1.116 3.482 7.060 Atomic orbital electron populations 1.70042 1.07946 1.29522 1.40630 1.26352 0.95429 1.02750 0.93152 0.85329 0.78894 0.77185 0.79094 1.19033 1.20867 1.18488 1.18332 0.95005 0.89109 1.46875 0.90396 1.19104 1.01417 0.92833 0.95476 1.21160 1.02298 0.82033 0.97449 1.40021 1.29992 1.16634 1.47403 1.84133 1.51010 1.20110 1.45780 1.73467 1.11453 1.20601 1.08015 1.23122 0.99682 0.94069 1.00109 1.18131 0.97867 0.92887 0.96435 1.21770 0.94089 0.99928 0.95346 1.21554 0.98220 0.98105 0.96352 1.21517 0.98034 0.91323 0.99275 1.21355 0.96950 1.02863 0.96113 1.18288 0.95287 0.84467 0.97030 1.91445 1.75632 1.62031 1.83680 0.91250 0.74907 0.77526 0.83987 0.81876 0.80476 0.82202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -42.39 11.10 21.80 0.24 -42.15 15 2 C 0.03 1.57 4.77 85.14 0.41 1.98 15 3 Si 0.97 36.69 29.58 68.60 2.03 38.72 15 4 H -0.27 -9.62 7.11 99.48 0.71 -8.91 15 5 H -0.28 -10.65 7.11 99.48 0.71 -9.94 15 6 H -0.26 -9.58 7.11 99.48 0.71 -8.88 15 7 C -0.46 -23.54 7.63 23.25 0.18 -23.36 15 8 H 0.08 3.84 6.52 -2.91 -0.02 3.82 15 9 C -0.08 -4.09 5.81 -19.34 -0.11 -4.21 15 10 C 0.14 7.02 8.24 84.59 0.70 7.72 15 11 N -0.79 -33.24 8.03 -165.70 -1.33 -34.57 15 12 O 0.05 2.45 11.06 71.84 0.79 3.25 15 13 N -0.42 -22.85 10.77 -44.04 -0.47 -23.33 15 14 C -0.02 -0.96 7.23 44.52 0.32 -0.64 15 15 C -0.05 -2.36 5.88 -20.00 -0.12 -2.48 15 16 C -0.09 -3.62 9.52 22.49 0.21 -3.40 15 17 C -0.12 -3.48 10.03 22.24 0.22 -3.26 15 18 C -0.08 -1.99 10.04 22.31 0.22 -1.76 15 19 C -0.15 -4.54 10.02 22.28 0.22 -4.32 15 20 C 0.07 2.85 7.28 22.62 0.16 3.01 15 21 F -0.15 -6.73 15.90 44.97 0.72 -6.01 15 22 H 0.28 12.77 8.31 -92.71 -0.77 12.00 15 23 H 0.42 17.45 7.44 -92.71 -0.69 16.76 15 24 H 0.40 14.01 8.95 -92.71 -0.83 13.18 15 25 H 0.14 6.04 4.75 -2.91 -0.01 6.02 15 26 H 0.16 3.31 8.06 -2.91 -0.02 3.28 15 27 H 0.18 2.45 8.06 -2.91 -0.02 2.43 15 28 H 0.16 3.62 8.06 -2.91 -0.02 3.60 15 Total: -1.00 -65.57 254.35 4.13 -61.44 By element: Atomic # 1 Polarization: 33.63 SS G_CDS: -0.27 Total: 33.36 kcal Atomic # 6 Polarization: -33.14 SS G_CDS: 2.42 Total: -30.72 kcal Atomic # 7 Polarization: -98.48 SS G_CDS: -1.56 Total: -100.04 kcal Atomic # 8 Polarization: 2.45 SS G_CDS: 0.79 Total: 3.25 kcal Atomic # 9 Polarization: -6.73 SS G_CDS: 0.72 Total: -6.01 kcal Atomic # 14 Polarization: 36.69 SS G_CDS: 2.03 Total: 38.72 kcal Total: -65.57 4.13 -61.44 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260470407.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.197 kcal (2) G-P(sol) polarization free energy of solvation -65.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds