Wall clock time and date at job start Mon Mar 30 2020 06:13:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47221 * 2 1 4 4 C 1.50709 * 109.47031 * 239.99832 * 2 1 3 5 5 H 1.07995 * 119.99755 * 240.00475 * 4 2 1 6 6 C 1.37877 * 119.99893 * 60.00299 * 4 2 1 7 7 N 1.31514 * 119.99948 * 359.97438 * 6 4 2 8 8 Si 1.86793 * 120.00030 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46976 * 90.00081 * 8 6 4 10 10 H 1.48499 * 109.47236 * 209.99678 * 8 6 4 11 11 H 1.48497 * 109.47213 * 330.00063 * 8 6 4 12 12 N 1.46503 * 109.46911 * 120.00416 * 2 1 3 13 13 C 1.39024 * 119.99775 * 274.99546 * 12 2 1 14 14 C 1.38635 * 120.71635 * 0.02562 * 13 12 2 15 15 C 1.38305 * 119.37685 * 180.02562 * 14 13 12 16 16 N 1.31414 * 121.14729 * 359.97438 * 15 14 13 17 17 C 1.33614 * 122.32831 * 0.02562 * 16 15 14 18 18 S 1.76017 * 130.24916 * 179.97438 * 17 16 15 19 19 C 1.75294 * 92.22307 * 180.02562 * 18 17 16 20 20 C 1.31783 * 111.39558 * 0.02562 * 19 18 17 21 21 C 1.39602 * 120.24078 * 0.02562 * 17 16 15 22 22 H 1.09000 * 109.47645 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47183 * 300.00282 * 1 2 3 24 24 H 1.09007 * 109.47043 * 59.99716 * 1 2 3 25 25 H 0.97001 * 120.00021 * 179.97438 * 7 6 4 26 26 H 0.97003 * 120.00382 * 94.99942 * 12 2 1 27 27 H 1.08002 * 120.31038 * 0.02562 * 14 13 12 28 28 H 1.08002 * 119.42959 * 179.97438 * 15 14 13 29 29 H 1.08001 * 124.30169 * 179.97438 * 19 18 17 30 30 H 1.08001 * 122.59354 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6531 -1.5886 -1.1314 6 6 1.6993 -0.2394 -2.4828 7 7 0.9428 0.8296 -2.6034 8 14 2.3224 -1.1196 -4.0080 9 1 1.3447 -2.1615 -4.4124 10 1 2.4872 -0.1403 -5.1120 11 1 3.6308 -1.7567 -3.7120 12 7 2.0183 -0.6907 1.1962 13 6 2.1511 0.0028 2.3937 14 6 1.8253 1.3480 2.4729 15 6 1.9686 2.0110 3.6782 16 7 2.4074 1.3878 4.7488 17 6 2.7377 0.0932 4.7369 18 16 3.3401 -0.9387 6.0294 19 6 3.4239 -2.3327 4.9699 20 6 3.0294 -2.0329 3.7488 21 6 2.6241 -0.6507 3.5611 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 0.7088 1.1613 -3.4844 26 1 2.2490 -1.6319 1.1526 27 1 1.4630 1.8733 1.6015 28 1 1.7154 3.0590 3.7408 29 1 3.7573 -3.3126 5.2785 30 1 3.0091 -2.7588 2.9493 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260496426.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:00 Heat of formation + Delta-G solvation = 46.404952 kcal Electronic energy + Delta-G solvation = -15262.709006 eV Core-core repulsion = 12762.816611 eV Total energy + Delta-G solvation = -2499.892395 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.068 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.85335 -36.30514 -35.31179 -33.12582 -30.39426 -29.47591 -27.79507 -25.40951 -23.94516 -22.64428 -20.86595 -20.26851 -18.29685 -16.73963 -16.11278 -15.50049 -15.10090 -14.90667 -14.18265 -13.91712 -13.74612 -13.54197 -12.69010 -12.37791 -12.18204 -11.59704 -11.51870 -11.37092 -11.17532 -10.92658 -10.67689 -10.44640 -10.33526 -10.12736 -9.24482 -9.00196 -8.67613 -8.51169 -8.01977 -6.86662 -6.29622 -4.38900 1.04882 1.61018 1.83595 2.22379 2.61618 3.15113 3.22721 3.24818 4.04619 4.24574 4.30455 4.83065 5.03581 5.03772 5.28111 5.49329 5.66868 5.93162 6.06632 6.16509 6.43517 6.53672 6.57646 6.77026 6.84103 6.94442 7.22402 7.50729 7.64931 7.85714 8.06253 8.33999 8.40051 8.68669 9.28880 10.76374 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.036770 B = 0.005643 C = 0.005094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.302330 B = 4961.057445 C = 5495.099462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.262 3.738 3 H 0.047 0.953 4 C -0.536 4.536 5 H 0.062 0.938 6 C 0.069 3.931 7 N -0.884 5.884 8 Si 0.904 3.096 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.273 1.273 12 N -0.696 5.696 13 C 0.311 3.689 14 C -0.274 4.274 15 C 0.172 3.828 16 N -0.527 5.527 17 C 0.107 3.893 18 S 0.098 5.902 19 C -0.226 4.226 20 C -0.083 4.083 21 C -0.216 4.216 22 H 0.030 0.970 23 H 0.016 0.984 24 H 0.093 0.907 25 H 0.266 0.734 26 H 0.394 0.606 27 H 0.143 0.857 28 H 0.156 0.844 29 H 0.164 0.836 30 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.270 -2.998 10.314 10.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.160 3.840 3 H 0.064 0.936 4 C -0.574 4.574 5 H 0.080 0.920 6 C -0.135 4.135 7 N -0.521 5.521 8 Si 0.731 3.269 9 H -0.204 1.204 10 H -0.209 1.209 11 H -0.198 1.198 12 N -0.314 5.314 13 C 0.188 3.812 14 C -0.304 4.304 15 C 0.008 3.992 16 N -0.244 5.244 17 C -0.138 4.138 18 S 0.355 5.645 19 C -0.360 4.360 20 C -0.113 4.113 21 C -0.230 4.230 22 H 0.049 0.951 23 H 0.035 0.965 24 H 0.112 0.888 25 H 0.076 0.924 26 H 0.228 0.772 27 H 0.160 0.840 28 H 0.173 0.827 29 H 0.182 0.818 30 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 2.549 -2.205 12.211 12.668 hybrid contribution -0.077 -1.510 -3.254 3.588 sum 2.472 -3.715 8.957 10.007 Atomic orbital electron populations 1.22189 0.98187 0.99839 1.00985 1.18934 0.91106 0.93718 0.80232 0.93579 1.21145 1.32701 1.13481 0.90090 0.92017 1.24861 0.94613 0.94909 0.99117 1.69859 1.35690 1.22365 1.24215 0.86405 0.79249 0.79323 0.81942 1.20434 1.20907 1.19806 1.45714 1.65714 1.12481 1.07500 1.18039 0.86996 0.91184 0.85008 1.21483 1.14078 0.93839 1.00974 1.22325 0.90961 0.98966 0.86924 1.67202 1.18951 1.07054 1.31160 1.23166 1.00768 0.94740 0.95147 1.83863 1.69938 0.99559 1.11090 1.24773 1.11445 1.02479 0.97341 1.20600 0.99156 0.94333 0.97241 1.19562 1.14105 0.94865 0.94516 0.95065 0.96530 0.88803 0.92365 0.77211 0.83956 0.82677 0.81820 0.84433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.45 9.23 37.16 0.34 -3.11 16 2 C 0.26 6.02 2.26 -69.08 -0.16 5.86 16 3 H 0.05 1.15 6.52 -51.93 -0.34 0.81 16 4 C -0.54 -13.46 8.73 -34.44 -0.30 -13.76 16 5 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 6 C 0.07 1.75 5.30 -17.82 -0.09 1.65 16 7 N -0.88 -23.27 11.32 55.43 0.63 -22.64 16 8 Si 0.90 19.88 29.54 -169.99 -5.02 14.86 16 9 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 10 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 11 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16 12 N -0.70 -13.84 5.23 -52.71 -0.28 -14.12 16 13 C 0.31 5.94 6.73 -83.06 -0.56 5.38 16 14 C -0.27 -5.03 8.90 -39.41 -0.35 -5.38 16 15 C 0.17 2.88 11.16 -17.71 -0.20 2.68 16 16 N -0.53 -9.60 10.38 -11.85 -0.12 -9.72 16 17 C 0.11 1.90 7.65 -16.27 -0.12 1.78 16 18 S 0.10 1.40 23.24 -107.50 -2.50 -1.10 16 19 C -0.23 -2.95 11.02 28.84 0.32 -2.64 16 20 C -0.08 -1.24 10.02 -38.68 -0.39 -1.63 16 21 C -0.22 -3.85 6.06 -105.20 -0.64 -4.49 16 22 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.02 0.33 7.77 -51.93 -0.40 -0.07 16 24 H 0.09 2.31 6.07 -51.92 -0.32 1.99 16 25 H 0.27 6.69 8.31 -40.82 -0.34 6.36 16 26 H 0.39 7.28 7.83 -40.82 -0.32 6.96 16 27 H 0.14 2.65 6.26 -52.49 -0.33 2.32 16 28 H 0.16 2.04 8.06 -52.49 -0.42 1.62 16 29 H 0.16 1.60 8.06 -52.49 -0.42 1.18 16 30 H 0.14 1.80 7.63 -52.49 -0.40 1.40 16 LS Contribution 270.45 15.07 4.08 4.08 Total: -1.00 -27.17 270.45 -8.28 -35.45 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -2.91 Total: 6.83 kcal Atomic # 6 Polarization: -11.48 SS G_CDS: -2.15 Total: -13.63 kcal Atomic # 7 Polarization: -46.71 SS G_CDS: 0.23 Total: -46.48 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.02 Total: 14.86 kcal Atomic # 16 Polarization: 1.40 SS G_CDS: -2.50 Total: -1.10 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -27.17 -8.28 -35.45 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260496426.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.855 kcal (2) G-P(sol) polarization free energy of solvation -27.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds