Wall clock time and date at job start Mon Mar 30 2020 06:13:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47221 * 2 1 4 4 C 1.50709 * 109.47031 * 239.99832 * 2 1 3 5 5 H 1.07995 * 119.99755 * 240.00475 * 4 2 1 6 6 C 1.37877 * 119.99893 * 60.00299 * 4 2 1 7 7 N 1.31514 * 119.99948 * 359.97438 * 6 4 2 8 8 Si 1.86793 * 120.00030 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46976 * 90.00081 * 8 6 4 10 10 H 1.48499 * 109.47236 * 209.99678 * 8 6 4 11 11 H 1.48497 * 109.47213 * 330.00063 * 8 6 4 12 12 N 1.46503 * 109.46911 * 120.00416 * 2 1 3 13 13 C 1.39024 * 119.99775 * 274.99546 * 12 2 1 14 14 C 1.38635 * 120.71635 * 0.02562 * 13 12 2 15 15 C 1.38305 * 119.37685 * 180.02562 * 14 13 12 16 16 N 1.31414 * 121.14729 * 359.97438 * 15 14 13 17 17 C 1.33614 * 122.32831 * 0.02562 * 16 15 14 18 18 S 1.76017 * 130.24916 * 179.97438 * 17 16 15 19 19 C 1.75294 * 92.22307 * 180.02562 * 18 17 16 20 20 C 1.31783 * 111.39558 * 0.02562 * 19 18 17 21 21 C 1.39602 * 120.24078 * 0.02562 * 17 16 15 22 22 H 1.09000 * 109.47645 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47183 * 300.00282 * 1 2 3 24 24 H 1.09007 * 109.47043 * 59.99716 * 1 2 3 25 25 H 0.97001 * 120.00021 * 179.97438 * 7 6 4 26 26 H 0.97003 * 120.00382 * 94.99942 * 12 2 1 27 27 H 1.08002 * 120.31038 * 0.02562 * 14 13 12 28 28 H 1.08002 * 119.42959 * 179.97438 * 15 14 13 29 29 H 1.08001 * 124.30169 * 179.97438 * 19 18 17 30 30 H 1.08001 * 122.59354 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6531 -1.5886 -1.1314 6 6 1.6993 -0.2394 -2.4828 7 7 0.9428 0.8296 -2.6034 8 14 2.3224 -1.1196 -4.0080 9 1 1.3447 -2.1615 -4.4124 10 1 2.4872 -0.1403 -5.1120 11 1 3.6308 -1.7567 -3.7120 12 7 2.0183 -0.6907 1.1962 13 6 2.1511 0.0028 2.3937 14 6 1.8253 1.3480 2.4729 15 6 1.9686 2.0110 3.6782 16 7 2.4074 1.3878 4.7488 17 6 2.7377 0.0932 4.7369 18 16 3.3401 -0.9387 6.0294 19 6 3.4239 -2.3327 4.9699 20 6 3.0294 -2.0329 3.7488 21 6 2.6241 -0.6507 3.5611 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 0.7088 1.1613 -3.4844 26 1 2.2490 -1.6319 1.1526 27 1 1.4630 1.8733 1.6015 28 1 1.7154 3.0590 3.7408 29 1 3.7573 -3.3126 5.2785 30 1 3.0091 -2.7588 2.9493 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260496426.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:00 Heat of formation + Delta-G solvation = 30.569319 kcal Electronic energy + Delta-G solvation = -15263.395691 eV Core-core repulsion = 12762.816611 eV Total energy + Delta-G solvation = -2500.579080 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.068 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.20539 -37.91600 -36.52787 -34.91475 -32.05048 -30.82556 -29.30630 -27.32977 -25.27498 -24.06931 -22.37080 -21.66691 -19.76024 -18.38577 -17.61729 -16.85358 -16.62176 -16.47029 -15.58692 -15.30715 -15.18734 -14.91074 -14.36677 -14.05882 -13.38737 -13.24572 -13.09595 -12.87489 -12.69415 -12.61942 -12.31779 -12.16380 -11.76858 -11.73446 -11.11316 -10.60248 -10.35724 -9.81310 -9.27555 -8.30965 -8.20127 -6.37913 -0.21581 0.40647 0.43669 1.07183 1.40716 1.41958 1.43675 1.52739 2.32950 2.66098 2.87728 3.08916 3.65220 3.77355 4.03163 4.24165 4.39346 4.64068 4.71576 4.81905 4.92964 4.96211 5.03631 5.20094 5.31805 5.35457 5.53847 5.65044 5.82134 6.02655 6.36312 6.67915 6.94686 7.00143 7.33657 8.83014 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.036770 B = 0.005643 C = 0.005094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.302330 B = 4961.057445 C = 5495.099462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.272 3.728 3 H 0.021 0.979 4 C -0.551 4.551 5 H 0.063 0.937 6 C 0.023 3.977 7 N -0.910 5.910 8 Si 0.965 3.035 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.270 1.270 12 N -0.700 5.700 13 C 0.291 3.709 14 C -0.288 4.288 15 C 0.173 3.827 16 N -0.538 5.538 17 C 0.072 3.928 18 S 0.133 5.867 19 C -0.201 4.201 20 C -0.109 4.109 21 C -0.221 4.221 22 H 0.030 0.970 23 H 0.026 0.974 24 H 0.071 0.929 25 H 0.267 0.733 26 H 0.400 0.600 27 H 0.132 0.868 28 H 0.188 0.812 29 H 0.205 0.795 30 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.095 -4.422 11.442 12.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.169 3.831 3 H 0.038 0.962 4 C -0.589 4.589 5 H 0.081 0.919 6 C -0.178 4.178 7 N -0.548 5.548 8 Si 0.790 3.210 9 H -0.199 1.199 10 H -0.209 1.209 11 H -0.194 1.194 12 N -0.321 5.321 13 C 0.170 3.830 14 C -0.318 4.318 15 C 0.008 3.992 16 N -0.254 5.254 17 C -0.172 4.172 18 S 0.391 5.609 19 C -0.335 4.335 20 C -0.138 4.138 21 C -0.236 4.236 22 H 0.049 0.951 23 H 0.045 0.955 24 H 0.090 0.910 25 H 0.076 0.924 26 H 0.234 0.766 27 H 0.150 0.850 28 H 0.205 0.795 29 H 0.222 0.778 30 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 3.387 -3.644 13.389 14.284 hybrid contribution -0.288 -1.077 -3.431 3.608 sum 3.099 -4.722 9.958 11.448 Atomic orbital electron populations 1.22003 0.98096 0.99463 1.00317 1.18561 0.91066 0.92460 0.81016 0.96178 1.21472 1.32691 1.13615 0.91127 0.91913 1.25617 0.94814 0.95554 1.01787 1.69975 1.36591 1.23490 1.24746 0.85451 0.78771 0.78230 0.78551 1.19921 1.20871 1.19442 1.45335 1.67102 1.12598 1.07025 1.18255 0.87915 0.91636 0.85202 1.21558 1.14818 0.94009 1.01386 1.22791 0.90063 1.00282 0.86022 1.67302 1.19054 1.07555 1.31517 1.23780 1.01545 0.95074 0.96822 1.83776 1.68585 0.98863 1.09698 1.25297 1.08472 1.03566 0.96136 1.20757 1.00906 0.93399 0.98768 1.19864 1.13426 0.96427 0.93912 0.95122 0.95509 0.91020 0.92363 0.76560 0.85000 0.79504 0.77810 0.82824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.43 9.23 71.98 0.66 -5.77 16 2 C 0.27 12.80 2.26 44.25 0.10 12.90 16 3 H 0.02 1.06 6.52 -2.39 -0.02 1.04 16 4 C -0.55 -27.92 8.73 25.60 0.22 -27.70 16 5 H 0.06 3.09 7.74 -2.91 -0.02 3.07 16 6 C 0.02 1.19 5.30 84.65 0.45 1.64 16 7 N -0.91 -48.70 11.32 21.45 0.24 -48.46 16 8 Si 0.96 40.70 29.54 68.60 2.03 42.73 16 9 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 10 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 11 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 12 N -0.70 -28.16 5.23 -320.68 -1.68 -29.83 16 13 C 0.29 11.19 6.73 39.00 0.26 11.45 16 14 C -0.29 -10.75 8.90 22.38 0.20 -10.55 16 15 C 0.17 5.73 11.16 84.77 0.95 6.67 16 16 N -0.54 -19.11 10.38 -191.42 -1.99 -21.09 16 17 C 0.07 2.46 7.65 84.75 0.65 3.11 16 18 S 0.13 3.43 23.24 -56.49 -1.31 2.12 16 19 C -0.20 -4.51 11.02 67.07 0.74 -3.77 16 20 C -0.11 -3.00 10.02 23.32 0.23 -2.76 16 21 C -0.22 -7.71 6.06 -20.24 -0.12 -7.83 16 22 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 23 H 0.03 1.12 7.77 -2.39 -0.02 1.10 16 24 H 0.07 3.62 6.07 -2.38 -0.01 3.60 16 25 H 0.27 13.60 8.31 -92.71 -0.77 12.83 16 26 H 0.40 14.77 7.83 -92.71 -0.73 14.05 16 27 H 0.13 5.12 6.26 -2.91 -0.02 5.10 16 28 H 0.19 4.72 8.06 -2.91 -0.02 4.69 16 29 H 0.21 2.89 8.06 -2.91 -0.02 2.87 16 30 H 0.15 3.67 7.63 -2.91 -0.02 3.65 16 Total: -1.00 -58.01 270.45 2.08 -55.92 By element: Atomic # 1 Polarization: 20.77 SS G_CDS: 0.45 Total: 21.22 kcal Atomic # 6 Polarization: -26.95 SS G_CDS: 4.34 Total: -22.61 kcal Atomic # 7 Polarization: -95.96 SS G_CDS: -3.42 Total: -99.38 kcal Atomic # 14 Polarization: 40.70 SS G_CDS: 2.03 Total: 42.73 kcal Atomic # 16 Polarization: 3.43 SS G_CDS: -1.31 Total: 2.12 kcal Total: -58.01 2.08 -55.92 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260496426.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.494 kcal (2) G-P(sol) polarization free energy of solvation -58.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.925 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds