Wall clock time and date at job start Mon Mar 30 2020 06:13:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47747 * 2 1 4 4 C 1.50703 * 109.46785 * 120.00486 * 2 1 3 5 5 H 1.07993 * 120.00179 * 120.00411 * 4 2 1 6 6 C 1.37881 * 119.99689 * 299.99054 * 4 2 1 7 7 N 1.31510 * 120.00113 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99887 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47020 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.46958 * 120.00555 * 8 6 4 11 11 H 1.48497 * 109.47035 * 240.00297 * 8 6 4 12 12 N 1.46507 * 109.46847 * 240.00027 * 2 1 3 13 13 C 1.39008 * 119.99805 * 85.00417 * 12 2 1 14 14 C 1.38636 * 120.72190 * 359.97438 * 13 12 2 15 15 C 1.38316 * 119.37314 * 180.02562 * 14 13 12 16 16 N 1.31406 * 121.15676 * 0.02562 * 15 14 13 17 17 C 1.33624 * 122.32016 * 359.95952 * 16 15 14 18 18 S 1.76027 * 130.24808 * 180.02562 * 17 16 15 19 19 C 1.75296 * 92.22290 * 179.83940 * 18 17 16 20 20 C 1.31790 * 111.39198 * 0.34618 * 19 18 17 21 21 C 1.39593 * 120.24654 * 0.04323 * 17 16 15 22 22 H 1.09000 * 109.47747 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47300 * 300.00289 * 1 2 3 24 24 H 1.09004 * 109.47046 * 59.99524 * 1 2 3 25 25 H 0.97000 * 120.00371 * 179.97438 * 7 6 4 26 26 H 0.96999 * 119.99862 * 264.99831 * 12 2 1 27 27 H 1.07994 * 120.31271 * 0.02562 * 14 13 12 28 28 H 1.07995 * 119.41862 * 180.02562 * 15 14 13 29 29 H 1.08000 * 124.30570 * 180.21087 * 19 18 17 30 30 H 1.08002 * 122.59331 * 179.86533 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7105 1.2304 5 1 2.6531 -1.5886 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9429 0.8297 2.6034 8 14 2.3223 -1.1197 4.0080 9 1 3.1480 -2.2859 3.6038 10 1 3.1471 -0.1860 4.8161 11 1 1.1676 -1.5866 4.8165 12 7 2.0182 -0.6906 -1.1962 13 6 2.1510 0.0029 -2.3936 14 6 1.8253 1.3481 -2.4728 15 6 1.9676 2.0108 -3.6786 16 7 2.4054 1.3875 -4.7493 17 6 2.7359 0.0928 -4.7374 18 16 3.3373 -0.9395 -6.0301 19 6 3.4262 -2.3322 -4.9693 20 6 3.0265 -2.0336 -3.7495 21 6 2.6222 -0.6511 -3.5616 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 0.7083 1.1609 3.4844 26 1 2.2489 -1.6318 -1.1527 27 1 1.4638 1.8736 -1.6014 28 1 1.7144 3.0588 -3.7410 29 1 3.7633 -3.3110 -5.2768 30 1 3.0057 -2.7595 -2.9500 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260496439.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:02 Heat of formation + Delta-G solvation = 46.356499 kcal Electronic energy + Delta-G solvation = -15262.783291 eV Core-core repulsion = 12762.888795 eV Total energy + Delta-G solvation = -2499.894496 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.068 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.85294 -36.30666 -35.31170 -33.12758 -30.39454 -29.47528 -27.79609 -25.41166 -23.94538 -22.64449 -20.86637 -20.26855 -18.29742 -16.74119 -16.11395 -15.50200 -15.10225 -14.90627 -14.18236 -13.91709 -13.74339 -13.54158 -12.69300 -12.38161 -12.18110 -11.59757 -11.52405 -11.37265 -11.17576 -10.93070 -10.66568 -10.44533 -10.34129 -10.12377 -9.23744 -9.00321 -8.67887 -8.51222 -8.02037 -6.86671 -6.29920 -4.39069 1.04854 1.60998 1.83608 2.22369 2.61599 3.14217 3.22903 3.25469 4.04613 4.24530 4.30330 4.83093 5.03522 5.03655 5.28117 5.49316 5.66878 5.93173 6.06634 6.16509 6.43505 6.53648 6.57630 6.76875 6.84107 6.94440 7.22336 7.50843 7.64927 7.85593 8.06111 8.33983 8.40092 8.68766 9.28779 10.76140 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.036774 B = 0.005642 C = 0.005094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.223776 B = 4961.166908 C = 5495.358436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.262 3.738 3 H 0.047 0.953 4 C -0.535 4.535 5 H 0.062 0.938 6 C 0.068 3.932 7 N -0.884 5.884 8 Si 0.903 3.097 9 H -0.273 1.273 10 H -0.281 1.281 11 H -0.281 1.281 12 N -0.696 5.696 13 C 0.311 3.689 14 C -0.274 4.274 15 C 0.172 3.828 16 N -0.527 5.527 17 C 0.107 3.893 18 S 0.098 5.902 19 C -0.226 4.226 20 C -0.083 4.083 21 C -0.216 4.216 22 H 0.030 0.970 23 H 0.093 0.907 24 H 0.016 0.984 25 H 0.266 0.734 26 H 0.394 0.606 27 H 0.143 0.857 28 H 0.156 0.844 29 H 0.164 0.836 30 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.274 -3.007 -10.322 10.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.160 3.840 3 H 0.064 0.936 4 C -0.573 4.573 5 H 0.080 0.920 6 C -0.135 4.135 7 N -0.521 5.521 8 Si 0.731 3.269 9 H -0.197 1.197 10 H -0.207 1.207 11 H -0.207 1.207 12 N -0.314 5.314 13 C 0.188 3.812 14 C -0.304 4.304 15 C 0.008 3.992 16 N -0.244 5.244 17 C -0.138 4.138 18 S 0.355 5.645 19 C -0.360 4.360 20 C -0.113 4.113 21 C -0.230 4.230 22 H 0.049 0.951 23 H 0.112 0.888 24 H 0.035 0.965 25 H 0.076 0.924 26 H 0.228 0.772 27 H 0.160 0.840 28 H 0.173 0.827 29 H 0.182 0.818 30 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 2.548 -2.221 -12.223 12.682 hybrid contribution -0.072 -1.494 3.260 3.586 sum 2.477 -3.715 -8.964 10.014 Atomic orbital electron populations 1.22185 0.98178 0.99847 1.00987 1.18939 0.91117 0.93722 0.80247 0.93580 1.21182 1.32621 1.13469 0.90075 0.91961 1.24864 0.94606 0.94918 0.99130 1.69866 1.35720 1.22429 1.24114 0.86354 0.78687 0.79578 0.82311 1.19714 1.20719 1.20734 1.45710 1.65700 1.12482 1.07506 1.18040 0.86994 0.91186 0.85006 1.21484 1.14093 0.93844 1.00967 1.22325 0.90956 0.98967 0.86926 1.67206 1.18957 1.07045 1.31154 1.23166 1.00788 0.94734 0.95130 1.83865 1.69953 0.99661 1.10977 1.24775 1.11377 1.02512 0.97373 1.20601 0.99124 0.94339 0.97270 1.19563 1.14142 0.94834 0.94509 0.95056 0.88810 0.96520 0.92418 0.77207 0.83958 0.82681 0.81820 0.84431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.45 9.23 37.15 0.34 -3.10 16 2 C 0.26 6.01 2.26 -69.08 -0.16 5.85 16 3 H 0.05 1.15 6.52 -51.93 -0.34 0.81 16 4 C -0.54 -13.43 8.73 -34.44 -0.30 -13.74 16 5 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 6 C 0.07 1.74 5.30 -17.82 -0.09 1.65 16 7 N -0.88 -23.27 11.32 55.43 0.63 -22.64 16 8 Si 0.90 19.88 29.54 -169.99 -5.02 14.86 16 9 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 10 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 11 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 12 N -0.70 -13.84 5.22 -52.71 -0.28 -14.12 16 13 C 0.31 5.94 6.73 -83.06 -0.56 5.38 16 14 C -0.27 -5.03 8.90 -39.41 -0.35 -5.38 16 15 C 0.17 2.88 11.16 -17.70 -0.20 2.69 16 16 N -0.53 -9.60 10.38 -11.85 -0.12 -9.72 16 17 C 0.11 1.90 7.65 -16.27 -0.12 1.78 16 18 S 0.10 1.40 23.24 -107.50 -2.50 -1.10 16 19 C -0.23 -2.95 11.02 28.84 0.32 -2.64 16 20 C -0.08 -1.24 10.02 -38.68 -0.39 -1.63 16 21 C -0.22 -3.85 6.06 -105.20 -0.64 -4.49 16 22 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.09 2.31 6.07 -51.93 -0.32 1.99 16 24 H 0.02 0.33 7.77 -51.93 -0.40 -0.07 16 25 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 26 H 0.39 7.29 7.82 -40.82 -0.32 6.97 16 27 H 0.14 2.64 6.26 -52.49 -0.33 2.32 16 28 H 0.16 2.04 8.06 -52.49 -0.42 1.62 16 29 H 0.16 1.60 8.06 -52.49 -0.42 1.18 16 30 H 0.14 1.80 7.63 -52.49 -0.40 1.40 16 LS Contribution 270.45 15.07 4.08 4.08 Total: -1.00 -27.18 270.45 -8.28 -35.46 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -2.92 Total: 6.81 kcal Atomic # 6 Polarization: -11.48 SS G_CDS: -2.15 Total: -13.63 kcal Atomic # 7 Polarization: -46.70 SS G_CDS: 0.23 Total: -46.48 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.02 Total: 14.86 kcal Atomic # 16 Polarization: 1.40 SS G_CDS: -2.50 Total: -1.10 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -27.18 -8.28 -35.46 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260496439.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.817 kcal (2) G-P(sol) polarization free energy of solvation -27.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.461 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds