Wall clock time and date at job start Mon Mar 30 2020 06:13:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47747 * 2 1 4 4 C 1.50703 * 109.46785 * 120.00486 * 2 1 3 5 5 H 1.07993 * 120.00179 * 120.00411 * 4 2 1 6 6 C 1.37881 * 119.99689 * 299.99054 * 4 2 1 7 7 N 1.31510 * 120.00113 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99887 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47020 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.46958 * 120.00555 * 8 6 4 11 11 H 1.48497 * 109.47035 * 240.00297 * 8 6 4 12 12 N 1.46507 * 109.46847 * 240.00027 * 2 1 3 13 13 C 1.39008 * 119.99805 * 85.00417 * 12 2 1 14 14 C 1.38636 * 120.72190 * 359.97438 * 13 12 2 15 15 C 1.38316 * 119.37314 * 180.02562 * 14 13 12 16 16 N 1.31406 * 121.15676 * 0.02562 * 15 14 13 17 17 C 1.33624 * 122.32016 * 359.95952 * 16 15 14 18 18 S 1.76027 * 130.24808 * 180.02562 * 17 16 15 19 19 C 1.75296 * 92.22290 * 179.83940 * 18 17 16 20 20 C 1.31790 * 111.39198 * 0.34618 * 19 18 17 21 21 C 1.39593 * 120.24654 * 0.04323 * 17 16 15 22 22 H 1.09000 * 109.47747 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47300 * 300.00289 * 1 2 3 24 24 H 1.09004 * 109.47046 * 59.99524 * 1 2 3 25 25 H 0.97000 * 120.00371 * 179.97438 * 7 6 4 26 26 H 0.96999 * 119.99862 * 264.99831 * 12 2 1 27 27 H 1.07994 * 120.31271 * 0.02562 * 14 13 12 28 28 H 1.07995 * 119.41862 * 180.02562 * 15 14 13 29 29 H 1.08000 * 124.30570 * 180.21087 * 19 18 17 30 30 H 1.08002 * 122.59331 * 179.86533 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7105 1.2304 5 1 2.6531 -1.5886 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9429 0.8297 2.6034 8 14 2.3223 -1.1197 4.0080 9 1 3.1480 -2.2859 3.6038 10 1 3.1471 -0.1860 4.8161 11 1 1.1676 -1.5866 4.8165 12 7 2.0182 -0.6906 -1.1962 13 6 2.1510 0.0029 -2.3936 14 6 1.8253 1.3481 -2.4728 15 6 1.9676 2.0108 -3.6786 16 7 2.4054 1.3875 -4.7493 17 6 2.7359 0.0928 -4.7374 18 16 3.3373 -0.9395 -6.0301 19 6 3.4262 -2.3322 -4.9693 20 6 3.0265 -2.0336 -3.7495 21 6 2.6222 -0.6511 -3.5616 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 0.7083 1.1609 3.4844 26 1 2.2489 -1.6318 -1.1527 27 1 1.4638 1.8736 -1.6014 28 1 1.7144 3.0588 -3.7410 29 1 3.7633 -3.3110 -5.2768 30 1 3.0057 -2.7595 -2.9500 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260496439.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:02 Heat of formation + Delta-G solvation = 30.512530 kcal Electronic energy + Delta-G solvation = -15263.470337 eV Core-core repulsion = 12762.888795 eV Total energy + Delta-G solvation = -2500.581542 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.068 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.20482 -37.91730 -36.52773 -34.91648 -32.05072 -30.82470 -29.30683 -27.33219 -25.27502 -24.06946 -22.37122 -21.66650 -19.76089 -18.38814 -17.61925 -16.85512 -16.62073 -16.47007 -15.58646 -15.30448 -15.18672 -14.91198 -14.37035 -14.06133 -13.38686 -13.25310 -13.09081 -12.89458 -12.68241 -12.61738 -12.31615 -12.16007 -11.77028 -11.73285 -11.10350 -10.60971 -10.35750 -9.81258 -9.27585 -8.31031 -8.20335 -6.38066 -0.21588 0.40644 0.43705 1.07184 1.40454 1.41054 1.43672 1.53613 2.32813 2.66042 2.87727 3.08745 3.65251 3.77350 4.03177 4.24183 4.39360 4.64075 4.71580 4.81937 4.92935 4.96199 5.03651 5.20102 5.31787 5.35459 5.53987 5.65070 5.82147 6.02593 6.36253 6.68053 6.94673 7.00147 7.33558 8.82962 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.036774 B = 0.005642 C = 0.005094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.223776 B = 4961.166908 C = 5495.358436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.272 3.728 3 H 0.021 0.979 4 C -0.550 4.550 5 H 0.063 0.937 6 C 0.023 3.977 7 N -0.910 5.910 8 Si 0.965 3.035 9 H -0.267 1.267 10 H -0.281 1.281 11 H -0.279 1.279 12 N -0.700 5.700 13 C 0.291 3.709 14 C -0.288 4.288 15 C 0.173 3.827 16 N -0.538 5.538 17 C 0.071 3.929 18 S 0.133 5.867 19 C -0.201 4.201 20 C -0.109 4.109 21 C -0.221 4.221 22 H 0.030 0.970 23 H 0.071 0.929 24 H 0.026 0.974 25 H 0.267 0.733 26 H 0.400 0.600 27 H 0.132 0.868 28 H 0.188 0.812 29 H 0.205 0.795 30 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.101 -4.429 -11.455 12.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.169 3.831 3 H 0.038 0.962 4 C -0.588 4.588 5 H 0.081 0.919 6 C -0.178 4.178 7 N -0.548 5.548 8 Si 0.790 3.210 9 H -0.192 1.192 10 H -0.207 1.207 11 H -0.204 1.204 12 N -0.320 5.320 13 C 0.170 3.830 14 C -0.318 4.318 15 C 0.008 3.992 16 N -0.254 5.254 17 C -0.172 4.172 18 S 0.391 5.609 19 C -0.335 4.335 20 C -0.138 4.138 21 C -0.236 4.236 22 H 0.049 0.951 23 H 0.090 0.910 24 H 0.045 0.955 25 H 0.076 0.924 26 H 0.234 0.766 27 H 0.150 0.850 28 H 0.205 0.795 29 H 0.222 0.778 30 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 3.390 -3.658 -13.406 14.303 hybrid contribution -0.283 -1.061 3.439 3.610 sum 3.106 -4.719 -9.967 11.456 Atomic orbital electron populations 1.22001 0.98085 0.99479 1.00314 1.18566 0.91079 0.92464 0.81027 0.96176 1.21499 1.32597 1.13579 0.91111 0.91914 1.25619 0.94810 0.95567 1.01794 1.69979 1.36616 1.23549 1.24689 0.85403 0.78128 0.78543 0.78925 1.19153 1.20715 1.20419 1.45332 1.67090 1.12596 1.07032 1.18256 0.87911 0.91636 0.85199 1.21559 1.14831 0.94013 1.01379 1.22790 0.90060 1.00281 0.86024 1.67306 1.19059 1.07546 1.31512 1.23780 1.01566 0.95069 0.96805 1.83778 1.68599 0.98961 1.09588 1.25298 1.08417 1.03591 0.96165 1.20757 1.00873 0.93406 0.98796 1.19864 1.13460 0.96395 0.93903 0.95101 0.91035 0.95499 0.92367 0.76562 0.85002 0.79511 0.77811 0.82829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.43 9.23 71.98 0.66 -5.76 16 2 C 0.27 12.78 2.26 44.24 0.10 12.88 16 3 H 0.02 1.06 6.52 -2.39 -0.02 1.04 16 4 C -0.55 -27.85 8.73 25.60 0.22 -27.63 16 5 H 0.06 3.10 7.74 -2.91 -0.02 3.07 16 6 C 0.02 1.18 5.30 84.66 0.45 1.62 16 7 N -0.91 -48.71 11.32 21.45 0.24 -48.46 16 8 Si 0.96 40.71 29.54 68.60 2.03 42.74 16 9 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 10 H -0.28 -11.79 7.11 99.48 0.71 -11.09 16 11 H -0.28 -11.55 7.11 99.48 0.71 -10.84 16 12 N -0.70 -28.15 5.22 -320.68 -1.68 -29.82 16 13 C 0.29 11.18 6.73 39.01 0.26 11.45 16 14 C -0.29 -10.75 8.90 22.38 0.20 -10.55 16 15 C 0.17 5.73 11.16 84.78 0.95 6.68 16 16 N -0.54 -19.10 10.38 -191.41 -1.99 -21.09 16 17 C 0.07 2.46 7.65 84.75 0.65 3.11 16 18 S 0.13 3.43 23.24 -56.49 -1.31 2.12 16 19 C -0.20 -4.51 11.02 67.06 0.74 -3.77 16 20 C -0.11 -3.00 10.02 23.32 0.23 -2.76 16 21 C -0.22 -7.70 6.06 -20.24 -0.12 -7.82 16 22 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 23 H 0.07 3.61 6.07 -2.39 -0.01 3.60 16 24 H 0.03 1.13 7.77 -2.39 -0.02 1.11 16 25 H 0.27 13.56 8.31 -92.71 -0.77 12.78 16 26 H 0.40 14.78 7.82 -92.71 -0.73 14.05 16 27 H 0.13 5.12 6.26 -2.91 -0.02 5.10 16 28 H 0.19 4.71 8.06 -2.91 -0.02 4.69 16 29 H 0.21 2.89 8.06 -2.91 -0.02 2.87 16 30 H 0.15 3.67 7.63 -2.91 -0.02 3.65 16 Total: -1.00 -58.02 270.45 2.08 -55.94 By element: Atomic # 1 Polarization: 20.69 SS G_CDS: 0.45 Total: 21.14 kcal Atomic # 6 Polarization: -26.91 SS G_CDS: 4.34 Total: -22.57 kcal Atomic # 7 Polarization: -95.95 SS G_CDS: -3.42 Total: -99.37 kcal Atomic # 14 Polarization: 40.71 SS G_CDS: 2.03 Total: 42.74 kcal Atomic # 16 Polarization: 3.43 SS G_CDS: -1.31 Total: 2.12 kcal Total: -58.02 2.08 -55.94 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260496439.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.451 kcal (2) G-P(sol) polarization free energy of solvation -58.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds