Wall clock time and date at job start Mon Mar 30 2020 05:55:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31150 * 1 3 3 Si 1.86796 * 119.99769 * 2 1 4 4 H 1.48500 * 109.47512 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.47048 * 119.99909 * 3 2 1 6 6 H 1.48499 * 109.47328 * 239.99628 * 3 2 1 7 7 C 1.39676 * 120.00262 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99932 * 156.97215 * 7 2 1 9 9 C 1.40834 * 120.00078 * 336.97953 * 7 2 1 10 10 C 1.41124 * 128.82083 * 327.01396 * 9 7 2 11 11 N 1.36961 * 127.10461 * 0.03144 * 10 9 7 12 12 O 1.34063 * 105.78180 * 179.91164 * 10 9 7 13 13 N 1.20516 * 113.48801 * 0.38576 * 12 10 9 14 14 C 1.30895 * 113.09409 * 359.75542 * 13 12 10 15 15 C 1.48230 * 127.35829 * 180.02562 * 14 13 12 16 16 C 1.39455 * 120.11805 * 324.96936 * 15 14 13 17 17 C 1.37984 * 119.91705 * 180.02562 * 16 15 14 18 18 C 1.38319 * 120.15828 * 359.97438 * 17 16 15 19 19 C 1.38540 * 120.23762 * 359.97438 * 18 17 16 20 20 F 1.35102 * 119.96271 * 180.02562 * 19 18 17 21 21 C 1.38238 * 120.07628 * 359.77585 * 19 18 17 22 22 H 0.96998 * 119.99873 * 174.55387 * 1 2 3 23 23 H 0.96999 * 120.00295 * 353.02314 * 11 10 9 24 24 H 0.97009 * 119.99295 * 173.02202 * 11 10 9 25 25 H 1.07997 * 120.03832 * 359.97438 * 16 15 14 26 26 H 1.07999 * 119.91690 * 179.97438 * 17 16 15 27 27 H 1.08006 * 119.88335 * 180.02562 * 18 17 16 28 28 H 1.08006 * 120.07861 * 180.27876 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3115 0.0000 0.0000 3 14 2.2454 1.6177 0.0000 4 1 1.2804 2.7465 0.0006 5 1 3.0992 1.6964 1.2126 6 1 3.0992 1.6964 -1.2124 7 6 2.0099 -1.2096 0.0005 8 1 3.0254 -1.2470 -0.3653 9 6 1.3899 -2.3805 0.4780 10 6 0.4363 -2.5192 1.5090 11 7 -0.0993 -1.5211 2.2789 12 8 0.1609 -3.8295 1.5771 13 7 0.7798 -4.4923 0.7833 14 6 1.5780 -3.7787 0.0303 15 6 2.4774 -4.2665 -1.0422 16 6 3.1104 -5.5028 -0.9162 17 6 3.9472 -5.9526 -1.9168 18 6 4.1594 -5.1806 -3.0447 19 6 3.5331 -3.9520 -3.1771 20 9 3.7438 -3.2027 -4.2814 21 6 2.6887 -3.4941 -2.1830 22 1 -0.4850 -0.8362 -0.0797 23 1 0.2461 -0.6173 2.2103 24 1 -0.8241 -1.7181 2.8928 25 1 2.9464 -6.1069 -0.0361 26 1 4.4377 -6.9098 -1.8190 27 1 4.8150 -5.5373 -3.8254 28 1 2.1969 -2.5383 -2.2882 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260524288.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:39 Heat of formation + Delta-G solvation = 8.273397 kcal Electronic energy + Delta-G solvation = -17366.756100 eV Core-core repulsion = 14298.997020 eV Total energy + Delta-G solvation = -3067.759080 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 248.070 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.91696 -44.81837 -39.85060 -37.00214 -35.05043 -33.91248 -31.73020 -31.06142 -30.25084 -27.27370 -24.80391 -23.69289 -22.86989 -21.37180 -19.61476 -18.97283 -18.13229 -17.54557 -17.30297 -17.11241 -16.96215 -16.61276 -16.01315 -15.51992 -15.14709 -14.70752 -14.29401 -14.12192 -13.54102 -13.44582 -12.80582 -12.76017 -12.19261 -12.08428 -11.93686 -11.76068 -11.57541 -11.19541 -10.62685 -9.86073 -9.49968 -9.06039 -8.52646 -6.15042 -0.08203 0.20345 1.23387 1.45688 1.57440 1.83625 1.92286 2.17316 2.43350 2.66034 3.08460 3.12479 3.46409 3.79348 3.99724 4.07149 4.18575 4.35900 4.43277 4.75986 4.84353 5.04735 5.08045 5.19476 5.41325 5.55479 5.90632 5.94940 6.04238 6.58791 6.80657 6.96675 7.04792 7.96192 8.30682 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.019335 B = 0.009314 C = 0.006653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.799147 B = 3005.578256 C = 4207.429150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C -0.003 4.003 3 Si 1.111 2.889 4 H -0.273 1.273 5 H -0.265 1.265 6 H -0.274 1.274 7 C -0.524 4.524 8 H 0.058 0.942 9 C -0.090 4.090 10 C 0.099 3.901 11 N -0.803 5.803 12 O 0.058 5.942 13 N -0.403 5.403 14 C -0.014 4.014 15 C 0.020 3.980 16 C -0.122 4.122 17 C -0.077 4.077 18 C -0.143 4.143 19 C 0.084 3.916 20 F -0.146 7.146 21 C -0.144 4.144 22 H 0.272 0.728 23 H 0.419 0.581 24 H 0.401 0.599 25 H 0.131 0.869 26 H 0.180 0.820 27 H 0.172 0.828 28 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.148 -5.268 -1.739 8.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C -0.214 4.214 3 Si 0.931 3.069 4 H -0.198 1.198 5 H -0.189 1.189 6 H -0.200 1.200 7 C -0.557 4.557 8 H 0.076 0.924 9 C -0.102 4.102 10 C -0.066 4.066 11 N -0.361 5.361 12 O -0.001 6.001 13 N -0.118 5.118 14 C -0.167 4.167 15 C 0.019 3.981 16 C -0.141 4.141 17 C -0.094 4.094 18 C -0.162 4.162 19 C 0.065 3.935 20 F -0.125 7.125 21 C -0.165 4.165 22 H 0.083 0.917 23 H 0.255 0.745 24 H 0.230 0.770 25 H 0.149 0.851 26 H 0.197 0.803 27 H 0.190 0.810 28 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 5.666 -4.998 -1.684 7.741 hybrid contribution -0.234 -0.338 -0.103 0.424 sum 5.432 -5.336 -1.787 7.822 Atomic orbital electron populations 1.70701 1.07902 1.31775 1.36420 1.27893 0.95882 1.05900 0.91702 0.83013 0.74636 0.70804 0.78432 1.19782 1.18946 1.19983 1.19188 1.00599 0.92839 1.43036 0.92393 1.19305 1.01831 0.92518 0.96576 1.20934 1.05562 0.81890 0.98217 1.40395 1.42138 1.07339 1.46228 1.84116 1.53370 1.15506 1.47088 1.73332 1.12498 1.18336 1.07647 1.22980 1.01380 0.92629 0.99701 1.17581 0.95205 0.94638 0.90668 1.21473 0.97437 0.94349 1.00840 1.21306 0.96208 1.00767 0.91131 1.21522 1.01538 0.92208 1.00955 1.17703 0.99843 0.92062 0.83915 1.91461 1.93725 1.76347 1.50928 1.21147 1.00415 1.01184 0.93735 0.91721 0.74541 0.77017 0.85070 0.80313 0.81046 0.86661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -43.72 11.85 21.80 0.26 -43.46 15 2 C 0.00 -0.16 4.40 85.14 0.37 0.22 15 3 Si 1.11 43.45 29.99 68.60 2.06 45.51 15 4 H -0.27 -10.44 7.11 99.48 0.71 -9.73 15 5 H -0.26 -9.67 7.11 99.48 0.71 -8.96 15 6 H -0.27 -10.45 7.11 99.48 0.71 -9.75 15 7 C -0.52 -27.97 7.98 23.25 0.19 -27.78 15 8 H 0.06 3.15 7.94 -2.91 -0.02 3.13 15 9 C -0.09 -4.78 5.51 -19.34 -0.11 -4.88 15 10 C 0.10 4.85 7.73 84.60 0.65 5.51 15 11 N -0.80 -33.38 8.06 -165.70 -1.34 -34.72 15 12 O 0.06 2.82 11.06 71.92 0.80 3.62 15 13 N -0.40 -19.82 11.98 -44.03 -0.53 -20.35 15 14 C -0.01 -0.69 7.02 44.54 0.31 -0.37 15 15 C 0.02 0.87 5.86 -20.05 -0.12 0.76 15 16 C -0.12 -4.13 9.77 22.50 0.22 -3.91 15 17 C -0.08 -1.91 10.03 22.23 0.22 -1.69 15 18 C -0.14 -3.73 10.02 22.36 0.22 -3.51 15 19 C 0.08 2.90 7.29 22.34 0.16 3.07 15 20 F -0.15 -5.06 17.26 44.97 0.78 -4.28 15 21 C -0.14 -6.11 9.29 22.54 0.21 -5.90 15 22 H 0.27 15.09 6.78 -92.71 -0.63 14.46 15 23 H 0.42 17.96 6.81 -92.71 -0.63 17.33 15 24 H 0.40 13.64 8.95 -92.70 -0.83 12.81 15 25 H 0.13 4.26 8.06 -2.91 -0.02 4.24 15 26 H 0.18 2.75 8.06 -2.91 -0.02 2.72 15 27 H 0.17 3.07 8.06 -2.91 -0.02 3.05 15 28 H 0.12 5.54 7.12 -2.91 -0.02 5.52 15 Total: -1.00 -61.64 258.20 4.28 -57.36 By element: Atomic # 1 Polarization: 34.90 SS G_CDS: -0.08 Total: 34.82 kcal Atomic # 6 Polarization: -40.84 SS G_CDS: 2.34 Total: -38.49 kcal Atomic # 7 Polarization: -96.93 SS G_CDS: -1.60 Total: -98.53 kcal Atomic # 8 Polarization: 2.82 SS G_CDS: 0.80 Total: 3.62 kcal Atomic # 9 Polarization: -5.06 SS G_CDS: 0.78 Total: -4.28 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.06 Total: 45.51 kcal Total: -61.64 4.28 -57.36 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260524288.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.631 kcal (2) G-P(sol) polarization free energy of solvation -61.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds