Wall clock time and date at job start Mon Mar 30 2020 06:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86803 * 120.00004 * 2 1 4 4 H 1.48504 * 109.47259 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46926 * 300.00120 * 3 2 1 6 6 H 1.48492 * 109.47365 * 59.99936 * 3 2 1 7 7 C 1.39943 * 120.00259 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00458 * 163.58533 * 7 2 1 9 9 C 1.41397 * 119.99872 * 343.58645 * 7 2 1 10 10 C 1.40737 * 120.24143 * 334.14076 * 9 7 2 11 11 C 1.37602 * 119.74497 * 179.97438 * 10 9 7 12 12 C 1.38657 * 120.24798 * 0.02562 * 11 10 9 13 13 C 1.38617 * 120.49918 * 359.68179 * 12 11 10 14 14 C 1.37637 * 120.24955 * 0.59895 * 13 12 11 15 15 C 1.50696 * 120.12726 * 179.70047 * 14 13 12 16 16 C 1.53005 * 109.47095 * 264.72296 * 15 14 13 17 17 H 1.09003 * 108.85335 * 307.87746 * 16 15 14 18 18 C 1.52945 * 108.88952 * 189.43783 * 16 15 14 19 19 C 1.55151 * 108.95824 * 209.10917 * 18 16 15 20 20 S 1.83985 * 100.91375 * 41.43785 * 19 18 16 21 21 C 1.53712 * 108.88557 * 66.45828 * 16 15 14 22 22 H 0.96999 * 119.99635 * 0.02562 * 1 2 3 23 23 H 1.07996 * 120.12903 * 0.02562 * 10 9 7 24 24 H 1.07997 * 119.87460 * 180.02562 * 11 10 9 25 25 H 1.07992 * 119.75285 * 179.97438 * 12 11 10 26 26 H 1.08003 * 119.87675 * 180.30115 * 13 12 11 27 27 H 1.08997 * 109.47689 * 24.72760 * 15 14 13 28 28 H 1.09002 * 109.46882 * 144.73016 * 15 14 13 29 29 H 1.09005 * 109.59771 * 329.03844 * 18 16 15 30 30 H 1.08993 * 109.60180 * 89.17580 * 18 16 15 31 31 H 1.08997 * 111.13025 * 283.52019 * 19 18 16 32 32 H 1.09004 * 111.12629 * 159.35211 * 19 18 16 33 33 H 1.09000 * 110.33607 * 242.49202 * 21 16 15 34 34 H 1.08999 * 110.33927 * 4.63590 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.7023 1.3464 -0.0006 5 1 1.8835 2.3965 -1.2125 6 1 1.8836 2.3965 1.2124 7 6 2.0080 -1.2119 0.0005 8 1 3.0550 -1.2311 -0.2637 9 6 1.3443 -2.4113 0.3471 10 6 0.2131 -2.3792 1.1838 11 6 -0.4253 -3.5526 1.5141 12 6 0.0423 -4.7634 1.0263 13 6 1.1519 -4.8063 0.1966 14 6 1.8096 -3.6457 -0.1422 15 6 3.0196 -3.6963 -1.0390 16 6 4.2877 -3.7254 -0.1833 17 1 4.2518 -2.9001 0.5279 18 6 5.5031 -3.5388 -1.0928 19 6 6.7210 -4.2638 -0.4616 20 16 5.9331 -5.8174 0.1306 21 6 4.3330 -5.0506 0.5942 22 1 -0.4849 0.8401 -0.0004 23 1 -0.1530 -1.4372 1.5645 24 1 -1.2938 -3.5303 2.1557 25 1 -0.4647 -5.6795 1.2910 26 1 1.5045 -5.7545 -0.1815 27 1 2.9772 -4.5935 -1.6564 28 1 3.0340 -2.8146 -1.6798 29 1 5.2935 -3.9631 -2.0747 30 1 5.7230 -2.4763 -1.1958 31 1 7.1323 -3.6904 0.3691 32 1 7.4858 -4.4715 -1.2100 33 1 4.3001 -4.8616 1.6671 34 1 3.5033 -5.6924 0.2976 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260529549.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:24 Heat of formation + Delta-G solvation = -16.016898 kcal Electronic energy + Delta-G solvation = -15886.602574 eV Core-core repulsion = 13487.543707 eV Total energy + Delta-G solvation = -2399.058866 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.90970 -37.52073 -35.48135 -32.99480 -31.41447 -30.09274 -27.92032 -26.96850 -24.58902 -22.82691 -21.48009 -20.70552 -19.05759 -17.58443 -17.17512 -16.62588 -16.20136 -15.54437 -15.44529 -14.92777 -14.59246 -14.31164 -13.93313 -13.51075 -13.27392 -13.06200 -12.85454 -12.78424 -12.65310 -12.61099 -12.21070 -12.06088 -11.92387 -11.44152 -11.26683 -11.04441 -11.00113 -10.74856 -9.23312 -9.12575 -8.69169 -8.57783 -6.26700 0.98033 1.00679 1.16347 1.39627 1.43649 1.52214 1.53941 2.21622 2.79536 3.64947 3.72230 3.92644 4.05589 4.19657 4.31235 4.45861 4.52630 4.61978 4.71691 4.74043 4.79916 4.86976 4.93570 5.12023 5.19450 5.21860 5.31966 5.41718 5.43262 5.59293 5.80891 6.08632 6.20945 6.23980 6.44930 6.76447 7.01935 7.12626 8.38982 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.019689 B = 0.008306 C = 0.006133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.767371 B = 3370.168952 C = 4564.429556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.033 3.967 3 Si 0.972 3.028 4 H -0.251 1.251 5 H -0.270 1.270 6 H -0.272 1.272 7 C -0.482 4.482 8 H 0.086 0.914 9 C 0.086 3.914 10 C -0.193 4.193 11 C -0.119 4.119 12 C -0.242 4.242 13 C -0.096 4.096 14 C -0.194 4.194 15 C -0.036 4.036 16 C -0.083 4.083 17 H 0.063 0.937 18 C -0.117 4.117 19 C -0.051 4.051 20 S -0.350 6.350 21 C -0.042 4.042 22 H 0.284 0.716 23 H 0.095 0.905 24 H 0.101 0.899 25 H 0.111 0.889 26 H 0.113 0.887 27 H 0.063 0.937 28 H 0.059 0.941 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.096 0.904 32 H 0.125 0.875 33 H 0.076 0.924 34 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.439 -3.134 -1.546 10.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C -0.181 4.181 3 Si 0.793 3.207 4 H -0.175 1.175 5 H -0.195 1.195 6 H -0.197 1.197 7 C -0.512 4.512 8 H 0.104 0.896 9 C 0.084 3.916 10 C -0.213 4.213 11 C -0.138 4.138 12 C -0.261 4.261 13 C -0.114 4.114 14 C -0.195 4.195 15 C -0.074 4.074 16 C -0.103 4.103 17 H 0.081 0.919 18 C -0.155 4.155 19 C -0.198 4.198 20 S -0.125 6.125 21 C -0.190 4.190 22 H 0.094 0.906 23 H 0.113 0.887 24 H 0.119 0.881 25 H 0.129 0.871 26 H 0.131 0.869 27 H 0.081 0.919 28 H 0.078 0.922 29 H 0.101 0.899 30 H 0.108 0.892 31 H 0.115 0.885 32 H 0.144 0.856 33 H 0.094 0.906 34 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 9.647 -4.132 -1.491 10.600 hybrid contribution -0.860 1.947 0.253 2.143 sum 8.787 -2.186 -1.238 9.139 Atomic orbital electron populations 1.69909 1.09084 1.30065 1.36813 1.26726 0.95334 1.04428 0.91595 0.85307 0.79952 0.76919 0.78510 1.17463 1.19513 1.19671 1.19814 0.97987 0.91534 1.41824 0.89614 1.17798 0.91564 0.92959 0.89251 1.21323 1.00702 0.96630 1.02627 1.20921 0.99114 0.93442 1.00281 1.20724 1.01601 0.96611 1.07157 1.20731 0.95753 0.96734 0.98161 1.19983 1.01480 0.92935 1.05138 1.20223 0.90624 1.01013 0.95560 1.21551 0.95615 0.95833 0.97296 0.91850 1.22434 0.91399 1.02138 0.99579 1.24410 0.99680 0.92292 1.03418 1.87669 1.18668 1.21167 1.84963 1.23965 0.94801 0.98041 1.02225 0.90582 0.88687 0.88089 0.87112 0.86930 0.91885 0.92237 0.89905 0.89158 0.88496 0.85645 0.90577 0.88604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.30 10.97 21.83 0.24 -43.06 16 2 C 0.03 1.62 5.16 85.26 0.44 2.06 16 3 Si 0.97 37.16 29.59 68.60 2.03 39.19 16 4 H -0.25 -9.14 7.11 99.48 0.71 -8.43 16 5 H -0.27 -10.03 7.11 99.48 0.71 -9.32 16 6 H -0.27 -10.25 7.11 99.48 0.71 -9.54 16 7 C -0.48 -24.24 8.06 23.46 0.19 -24.05 16 8 H 0.09 4.05 6.21 -2.91 -0.02 4.03 16 9 C 0.09 4.43 5.56 -21.29 -0.12 4.31 16 10 C -0.19 -10.15 8.69 22.73 0.20 -9.95 16 11 C -0.12 -5.61 10.02 22.22 0.22 -5.39 16 12 C -0.24 -10.44 10.05 22.46 0.23 -10.21 16 13 C -0.10 -4.02 8.60 22.22 0.19 -3.83 16 14 C -0.19 -8.63 4.81 -19.41 -0.09 -8.73 16 15 C -0.04 -1.33 3.76 29.85 0.11 -1.22 16 16 C -0.08 -2.65 2.49 -10.57 -0.03 -2.67 16 17 H 0.06 2.30 7.39 -2.39 -0.02 2.29 16 18 C -0.12 -2.90 5.78 31.31 0.18 -2.72 16 19 C -0.05 -1.10 7.52 72.72 0.55 -0.56 16 20 S -0.35 -9.92 23.23 -56.49 -1.31 -11.23 16 21 C -0.04 -1.33 6.49 72.22 0.47 -0.86 16 22 H 0.28 13.47 8.30 -92.71 -0.77 12.70 16 23 H 0.10 5.29 6.21 -2.91 -0.02 5.27 16 24 H 0.10 4.28 8.06 -2.91 -0.02 4.25 16 25 H 0.11 4.14 8.06 -2.91 -0.02 4.12 16 26 H 0.11 4.08 7.27 -2.91 -0.02 4.06 16 27 H 0.06 2.12 8.01 -2.39 -0.02 2.11 16 28 H 0.06 2.32 7.03 -2.39 -0.02 2.30 16 29 H 0.08 1.97 7.83 -2.38 -0.02 1.95 16 30 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.13 2.15 8.14 -2.38 -0.02 2.13 16 33 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 34 H 0.10 3.11 5.74 -2.39 -0.01 3.10 16 Total: -1.00 -56.05 284.78 4.58 -51.47 By element: Atomic # 1 Polarization: 26.37 SS G_CDS: 1.08 Total: 27.46 kcal Atomic # 6 Polarization: -66.36 SS G_CDS: 2.54 Total: -63.82 kcal Atomic # 7 Polarization: -43.30 SS G_CDS: 0.24 Total: -43.06 kcal Atomic # 14 Polarization: 37.16 SS G_CDS: 2.03 Total: 39.19 kcal Atomic # 16 Polarization: -9.92 SS G_CDS: -1.31 Total: -11.23 kcal Total: -56.05 4.58 -51.47 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260529549.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.453 kcal (2) G-P(sol) polarization free energy of solvation -56.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds