Wall clock time and date at job start Mon Mar 30 2020 05:47:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35952 * 117.00117 * 2 1 4 4 C 1.39287 * 119.96506 * 359.97438 * 3 2 1 5 5 C 1.36031 * 120.53207 * 180.02562 * 4 3 2 6 6 C 1.41181 * 120.54398 * 359.68470 * 5 4 3 7 7 C 1.45461 * 129.27710 * 179.64820 * 6 5 4 8 8 C 1.50700 * 122.55161 * 0.69487 * 7 6 5 9 9 C 1.50702 * 109.46869 * 84.73811 * 8 7 6 10 10 H 1.08002 * 120.00299 * 0.02562 * 9 8 7 11 11 C 1.37884 * 119.99942 * 179.72213 * 9 8 7 12 12 N 1.31514 * 119.99985 * 180.27663 * 11 9 8 13 13 Si 1.86800 * 119.99777 * 0.28166 * 11 9 8 14 14 H 1.48498 * 109.47109 * 89.99834 * 13 11 9 15 15 H 1.48507 * 109.46754 * 209.99574 * 13 11 9 16 16 H 1.48498 * 109.47278 * 329.99405 * 13 11 9 17 17 C 1.31767 * 114.89910 * 180.43212 * 7 6 5 18 18 S 1.75288 * 111.41158 * 0.26797 * 17 7 6 19 19 C 1.39738 * 118.91222 * 0.61736 * 6 5 4 20 20 C 1.37922 * 119.96629 * 180.02562 * 3 2 1 21 21 H 1.09000 * 109.46553 * 299.99962 * 1 2 3 22 22 H 1.08995 * 109.46978 * 59.99654 * 1 2 3 23 23 H 1.08997 * 109.47437 * 180.02562 * 1 2 3 24 24 H 1.07996 * 119.73352 * 0.02562 * 4 3 2 25 25 H 1.08005 * 119.72695 * 180.02562 * 5 4 3 26 26 H 1.09004 * 109.47210 * 324.74104 * 8 7 6 27 27 H 1.08994 * 109.47551 * 204.73757 * 8 7 6 28 28 H 0.96996 * 119.99730 * 180.02562 * 12 11 9 29 29 H 1.08001 * 124.29342 * 180.26646 * 17 7 6 30 30 H 1.08002 * 119.93107 * 359.97438 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2869 2.3790 -0.0005 5 6 1.8925 3.5971 -0.0011 6 6 3.3006 3.6983 0.0056 7 6 4.1385 4.8874 -0.0006 8 6 3.5671 6.2819 -0.0009 9 6 3.2625 6.7001 1.4146 10 1 3.4630 6.0240 2.2325 11 6 2.7337 7.9485 1.6659 12 7 2.4730 8.3156 2.9015 13 14 2.3875 9.1182 0.2512 14 1 1.0028 8.9040 -0.2407 15 1 2.5349 10.5195 0.7203 16 1 3.3495 8.8612 -0.8504 17 6 5.4350 4.6525 -0.0005 18 16 5.7737 2.9326 -0.0004 19 6 4.0622 2.5267 -0.0004 20 6 3.4236 1.2827 -0.0005 21 1 -0.3632 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 0.2087 2.3169 -0.0005 25 1 1.2910 4.4942 -0.0011 26 1 2.6502 6.2988 -0.5900 27 1 4.2910 6.9711 -0.4355 28 1 2.1006 9.1936 3.0783 29 1 6.1929 5.4219 -0.0005 30 1 4.0101 0.3758 -0.0005 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260738496.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:02 Heat of formation + Delta-G solvation = -0.242532 kcal Electronic energy + Delta-G solvation = -15091.059813 eV Core-core repulsion = 12556.851880 eV Total energy + Delta-G solvation = -2534.207933 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.00117 -38.01103 -34.89165 -32.60455 -31.01304 -29.48231 -27.96194 -27.04959 -23.43483 -22.45878 -21.77799 -18.79331 -18.39219 -16.82258 -16.38925 -15.97661 -15.69772 -15.22004 -14.34549 -13.89210 -13.46736 -13.22840 -12.94816 -12.78967 -12.34009 -12.30621 -11.86802 -11.63487 -11.36056 -11.15580 -10.56335 -10.38718 -10.19878 -10.01795 -9.94972 -9.44546 -8.96075 -8.62830 -7.78207 -7.10029 -6.11548 -4.11198 1.23474 1.50093 1.95263 2.52377 2.89465 3.24152 3.32925 3.35072 3.37861 4.05990 4.36704 4.90848 5.09311 5.10977 5.12794 5.19095 5.33727 5.40031 5.51091 5.73290 6.00451 6.11290 6.29492 6.45890 6.52811 6.69586 6.80136 6.85105 7.06402 7.36921 7.50222 7.62667 8.44997 8.94173 9.47915 11.01309 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.022651 B = 0.006978 C = 0.005729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.850830 B = 4011.494043 C = 4886.524668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.319 6.319 3 C 0.133 3.867 4 C -0.207 4.207 5 C -0.020 4.020 6 C -0.090 4.090 7 C -0.023 4.023 8 C 0.033 3.967 9 C -0.513 4.513 10 H 0.074 0.926 11 C 0.071 3.929 12 N -0.898 5.898 13 Si 0.875 3.125 14 H -0.276 1.276 15 H -0.286 1.286 16 H -0.264 1.264 17 C -0.220 4.220 18 S 0.046 5.954 19 C -0.100 4.100 20 C -0.131 4.131 21 H 0.056 0.944 22 H 0.055 0.945 23 H 0.096 0.904 24 H 0.130 0.870 25 H 0.137 0.863 26 H 0.026 0.974 27 H 0.031 0.969 28 H 0.265 0.735 29 H 0.163 0.837 30 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.497 -12.992 -7.675 15.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.233 6.233 3 C 0.086 3.914 4 C -0.228 4.228 5 C -0.040 4.040 6 C -0.099 4.099 7 C -0.033 4.033 8 C -0.006 4.006 9 C -0.551 4.551 10 H 0.092 0.908 11 C -0.131 4.131 12 N -0.536 5.536 13 Si 0.702 3.298 14 H -0.201 1.201 15 H -0.212 1.212 16 H -0.189 1.189 17 C -0.352 4.352 18 S 0.309 5.691 19 C -0.215 4.215 20 C -0.155 4.155 21 H 0.075 0.925 22 H 0.073 0.927 23 H 0.115 0.885 24 H 0.148 0.852 25 H 0.155 0.845 26 H 0.044 0.956 27 H 0.049 0.951 28 H 0.075 0.925 29 H 0.180 0.820 30 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -0.068 -13.798 -7.561 15.734 hybrid contribution -1.722 1.713 -0.449 2.470 sum -1.790 -12.084 -8.009 14.608 Atomic orbital electron populations 1.23028 0.78559 1.03561 1.01551 1.86028 1.21237 1.26963 1.89098 1.18612 0.91628 0.84000 0.97202 1.20761 0.99991 0.92059 1.10020 1.20692 0.92740 0.97550 0.92980 1.19229 0.93916 0.91363 1.05357 1.20050 0.91659 0.96290 0.95289 1.18576 0.95924 0.87351 0.98777 1.20891 1.42470 1.00981 0.90770 0.90769 1.24975 0.94948 0.97702 0.95457 1.69896 1.44072 1.20726 1.18914 0.86848 0.79258 0.80544 0.83148 1.20123 1.21165 1.18876 1.24582 0.99565 0.97091 1.14011 1.83654 1.02211 1.02235 1.81036 1.22332 0.97474 0.96035 1.05658 1.19341 0.91198 0.95679 1.09269 0.92529 0.92667 0.88517 0.85248 0.84545 0.95619 0.95059 0.92547 0.81982 0.85347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.81 101.05 0.99 1.25 16 2 O -0.32 -4.33 10.49 -19.59 -0.21 -4.53 16 3 C 0.13 2.06 6.67 -39.31 -0.26 1.80 16 4 C -0.21 -3.20 8.95 -39.98 -0.36 -3.55 16 5 C -0.02 -0.36 9.75 -39.26 -0.38 -0.75 16 6 C -0.09 -1.80 6.02 -105.34 -0.63 -2.44 16 7 C -0.02 -0.49 5.16 -103.64 -0.53 -1.03 16 8 C 0.03 0.79 4.17 -29.03 -0.12 0.66 16 9 C -0.51 -14.30 9.65 -34.44 -0.33 -14.63 16 10 H 0.07 2.30 7.98 -52.49 -0.42 1.88 16 11 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 12 N -0.90 -27.10 13.96 55.43 0.77 -26.32 16 13 Si 0.88 20.87 27.47 -169.99 -4.67 16.20 16 14 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 15 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 16 H -0.26 -6.03 6.54 56.52 0.37 -5.66 16 17 C -0.22 -4.23 10.73 28.84 0.31 -3.92 16 18 S 0.05 0.77 23.23 -107.50 -2.50 -1.73 16 19 C -0.10 -1.81 6.48 -38.42 -0.25 -2.06 16 20 C -0.13 -2.14 10.01 -39.10 -0.39 -2.53 16 21 H 0.06 0.50 7.66 -51.93 -0.40 0.10 16 22 H 0.05 0.46 7.66 -51.93 -0.40 0.06 16 23 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.13 1.60 6.28 -52.49 -0.33 1.27 16 25 H 0.14 2.45 7.81 -52.48 -0.41 2.04 16 26 H 0.03 0.58 7.27 -51.93 -0.38 0.21 16 27 H 0.03 0.73 7.14 -51.93 -0.37 0.35 16 28 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 29 H 0.16 2.86 8.06 -52.49 -0.42 2.44 16 30 H 0.13 1.84 8.06 -52.49 -0.42 1.42 16 LS Contribution 273.13 15.07 4.12 4.12 Total: -1.00 -30.81 273.13 -7.68 -38.50 By element: Atomic # 1 Polarization: 2.19 SS G_CDS: -3.14 Total: -0.95 kcal Atomic # 6 Polarization: -23.21 SS G_CDS: -2.06 Total: -25.27 kcal Atomic # 7 Polarization: -27.10 SS G_CDS: 0.77 Total: -26.32 kcal Atomic # 8 Polarization: -4.33 SS G_CDS: -0.21 Total: -4.53 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -4.67 Total: 16.20 kcal Atomic # 16 Polarization: 0.77 SS G_CDS: -2.50 Total: -1.73 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -30.81 -7.68 -38.50 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260738496.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.253 kcal (2) G-P(sol) polarization free energy of solvation -30.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds