Wall clock time and date at job start Mon Mar 30 2020 05:45:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 109.47202 * 2 1 4 4 C 1.50705 * 109.46980 * 239.99678 * 2 1 3 5 5 H 1.07999 * 119.99904 * 240.00230 * 4 2 1 6 6 C 1.37880 * 119.99669 * 60.00092 * 4 2 1 7 7 N 1.31509 * 120.00163 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99608 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.46790 * 60.00774 * 8 6 4 10 10 H 1.48505 * 109.46824 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.47551 * 299.99968 * 8 6 4 12 12 C 1.50696 * 109.46805 * 120.00286 * 2 1 3 13 13 S 1.75297 * 124.30315 * 60.56258 * 12 2 1 14 14 C 1.75886 * 92.24007 * 180.02562 * 13 12 2 15 15 C 1.39884 * 130.53790 * 179.39467 * 14 13 12 16 16 C 1.37450 * 120.18192 * 179.97438 * 15 14 13 17 17 C 1.38872 * 120.18694 * 0.02562 * 16 15 14 18 18 C 1.36092 * 120.59102 * 0.02562 * 17 16 15 19 19 C 1.39767 * 109.72712 * 359.65363 * 14 13 12 20 20 C 1.32036 * 124.29338 * 239.99721 * 12 2 1 21 21 O 1.36223 * 122.59109 * 359.94196 * 20 12 2 22 22 H 1.09003 * 109.47238 * 179.97438 * 1 2 3 23 23 H 1.08992 * 109.46997 * 300.00096 * 1 2 3 24 24 H 1.08995 * 109.46800 * 60.00204 * 1 2 3 25 25 H 0.97007 * 120.00058 * 180.02562 * 7 6 4 26 26 H 1.08003 * 119.90932 * 359.97438 * 15 14 13 27 27 H 1.07995 * 119.90317 * 180.02562 * 16 15 14 28 28 H 1.07996 * 119.70224 * 180.02562 * 17 16 15 29 29 H 1.08002 * 119.76567 * 179.97438 * 18 17 16 30 30 H 0.96697 * 114.00465 * 269.99660 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2394 -2.4828 7 7 0.9436 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 1.8278 -2.5199 -4.0081 10 1 1.8278 -0.4194 -5.2205 11 1 3.8074 -1.1192 -4.0078 12 6 2.0323 -0.7105 1.2304 13 16 1.6905 -2.3870 1.6118 14 6 2.6193 -2.3088 3.1034 15 6 2.8609 -3.2845 4.0763 16 6 3.6307 -2.9885 5.1757 17 6 4.1727 -1.7189 5.3273 18 6 3.9494 -0.7545 4.3934 19 6 3.1588 -1.0286 3.2567 20 6 2.7945 -0.1522 2.1528 21 8 3.2079 1.1436 2.0773 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 0.7089 1.1613 -3.4845 26 1 2.4412 -4.2733 3.9631 27 1 3.8147 -3.7453 5.9238 28 1 4.7768 -1.4949 6.1940 29 1 4.3770 0.2285 4.5248 30 1 4.0485 1.2620 1.6143 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260919309.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:37 Heat of formation + Delta-G solvation = -28.463343 kcal Electronic energy + Delta-G solvation = -15317.804440 eV Core-core repulsion = 12782.372761 eV Total energy + Delta-G solvation = -2535.431679 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.72160 -38.70474 -36.48742 -34.46759 -32.73143 -31.81420 -29.14335 -27.29270 -24.63355 -23.91894 -22.31126 -21.19685 -19.03484 -18.33084 -18.18728 -16.88509 -16.69699 -16.22995 -15.72856 -15.22865 -14.80580 -14.72085 -14.24769 -13.88031 -13.57315 -13.14937 -12.96740 -12.84624 -12.47403 -12.41529 -12.19946 -12.02221 -11.73489 -11.49023 -11.27470 -11.03687 -10.52840 -10.42150 -9.27910 -8.53955 -8.14482 -6.30723 -0.14469 0.33633 0.62595 1.13191 1.31042 1.41314 1.42253 1.50316 2.40354 2.79486 3.12501 3.35635 3.75825 4.05655 4.16706 4.44640 4.51606 4.61927 4.75328 4.81993 4.92182 5.06523 5.15662 5.17868 5.38153 5.47291 5.52028 5.58368 5.75880 5.92807 6.01256 6.21861 6.75572 6.78058 7.37731 8.89733 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.034297 B = 0.006693 C = 0.006320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.201024 B = 4182.372539 C = 4429.109501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.104 3.896 3 H 0.021 0.979 4 C -0.529 4.529 5 H 0.054 0.946 6 C 0.019 3.981 7 N -0.914 5.914 8 Si 0.956 3.044 9 H -0.270 1.270 10 H -0.281 1.281 11 H -0.271 1.271 12 C -0.155 4.155 13 S 0.105 5.895 14 C -0.165 4.165 15 C -0.092 4.092 16 C -0.099 4.099 17 C -0.115 4.115 18 C -0.090 4.090 19 C -0.107 4.107 20 C 0.050 3.950 21 O -0.487 6.487 22 H 0.032 0.968 23 H 0.020 0.980 24 H 0.067 0.933 25 H 0.264 0.736 26 H 0.145 0.855 27 H 0.168 0.832 28 H 0.162 0.838 29 H 0.134 0.866 30 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.095 -6.965 13.777 16.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.084 3.916 3 H 0.039 0.961 4 C -0.567 4.567 5 H 0.073 0.927 6 C -0.180 4.180 7 N -0.553 5.553 8 Si 0.781 3.219 9 H -0.195 1.195 10 H -0.206 1.206 11 H -0.196 1.196 12 C -0.271 4.271 13 S 0.369 5.631 14 C -0.280 4.280 15 C -0.114 4.114 16 C -0.120 4.120 17 C -0.135 4.135 18 C -0.109 4.109 19 C -0.116 4.116 20 C -0.006 4.006 21 O -0.297 6.297 22 H 0.051 0.949 23 H 0.039 0.961 24 H 0.086 0.914 25 H 0.074 0.926 26 H 0.163 0.837 27 H 0.186 0.814 28 H 0.180 0.820 29 H 0.151 0.849 30 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 4.641 -7.795 13.147 15.974 hybrid contribution 1.208 1.160 -0.924 1.913 sum 5.849 -6.635 12.223 15.088 Atomic orbital electron populations 1.21658 0.97154 0.99299 0.99955 1.17277 0.92981 0.94013 0.87282 0.96144 1.21304 1.31966 1.12633 0.90832 0.92737 1.25705 0.94999 0.95571 1.01760 1.69998 1.37098 1.23803 1.24379 0.85639 0.78842 0.78862 0.78551 1.19491 1.20619 1.19629 1.24737 1.03500 0.98150 1.00750 1.83888 1.55159 1.07848 1.16214 1.22961 1.05640 0.98257 1.01120 1.20835 0.99758 0.97980 0.92866 1.21491 0.95774 0.97704 0.97031 1.21111 1.00175 0.92877 0.99374 1.20902 0.97055 1.00922 0.92060 1.19532 1.02038 0.92627 0.97360 1.18112 1.02298 0.85639 0.94503 1.84806 1.44330 1.20867 1.79699 0.94883 0.96053 0.91391 0.92641 0.83680 0.81430 0.82029 0.84851 0.74908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.29 8.88 71.98 0.64 -5.65 16 2 C 0.10 5.50 2.61 -12.28 -0.03 5.47 16 3 H 0.02 1.19 7.43 -2.39 -0.02 1.17 16 4 C -0.53 -29.32 8.41 25.60 0.22 -29.11 16 5 H 0.05 3.00 7.74 -2.91 -0.02 2.98 16 6 C 0.02 1.05 5.30 84.66 0.45 1.50 16 7 N -0.91 -52.59 11.32 21.45 0.24 -52.35 16 8 Si 0.96 43.39 29.54 68.60 2.03 45.41 16 9 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 10 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 11 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 12 C -0.16 -7.15 4.96 24.76 0.12 -7.03 16 13 S 0.11 4.16 22.75 -56.49 -1.29 2.88 16 14 C -0.16 -5.63 6.48 23.04 0.15 -5.49 16 15 C -0.09 -2.34 10.07 22.48 0.23 -2.11 16 16 C -0.10 -1.94 10.03 22.24 0.22 -1.72 16 17 C -0.12 -2.36 9.95 21.92 0.22 -2.14 16 18 C -0.09 -2.48 10.03 22.48 0.23 -2.25 16 19 C -0.11 -3.84 6.05 -20.30 -0.12 -3.96 16 20 C 0.05 2.08 6.88 23.24 0.16 2.24 16 21 O -0.49 -19.27 12.83 -96.09 -1.23 -20.50 16 22 H 0.03 1.61 7.95 -2.39 -0.02 1.59 16 23 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 24 H 0.07 3.76 6.07 -2.39 -0.01 3.75 16 25 H 0.26 14.43 8.31 -92.70 -0.77 13.66 16 26 H 0.15 2.97 8.06 -2.91 -0.02 2.95 16 27 H 0.17 1.87 8.06 -2.91 -0.02 1.84 16 28 H 0.16 2.05 8.06 -2.91 -0.02 2.02 16 29 H 0.13 3.28 8.06 -2.91 -0.02 3.25 16 30 H 0.39 12.44 9.07 -74.06 -0.67 11.77 16 Total: -1.00 -65.77 274.35 2.72 -63.05 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: 0.49 Total: 11.74 kcal Atomic # 6 Polarization: -52.71 SS G_CDS: 2.47 Total: -50.24 kcal Atomic # 7 Polarization: -52.59 SS G_CDS: 0.24 Total: -52.35 kcal Atomic # 8 Polarization: -19.27 SS G_CDS: -1.23 Total: -20.50 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.41 kcal Atomic # 16 Polarization: 4.16 SS G_CDS: -1.29 Total: 2.88 kcal Total: -65.77 2.72 -63.05 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260919309.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.586 kcal (2) G-P(sol) polarization free energy of solvation -65.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds