Wall clock time and date at job start Mon Mar 30 2020 05:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47225 * 2 1 4 4 C 1.50699 * 109.47095 * 120.00212 * 2 1 3 5 5 H 1.08003 * 119.99947 * 119.99624 * 4 2 1 6 6 C 1.37871 * 120.00262 * 300.00138 * 4 2 1 7 7 N 1.31524 * 119.99645 * 359.97438 * 6 4 2 8 8 Si 1.86793 * 120.00230 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47198 * 60.00284 * 8 6 4 10 10 H 1.48503 * 109.47284 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47460 * 299.99779 * 8 6 4 12 12 C 1.50702 * 109.46961 * 240.00284 * 2 1 3 13 13 S 1.75287 * 124.29571 * 299.97531 * 12 2 1 14 14 C 1.75896 * 92.23757 * 180.02562 * 13 12 2 15 15 C 1.39889 * 130.53711 * 179.97438 * 14 13 12 16 16 C 1.37452 * 120.17870 * 180.02562 * 15 14 13 17 17 C 1.38870 * 120.18818 * 359.75054 * 16 15 14 18 18 C 1.36087 * 120.59175 * 0.51187 * 17 16 15 19 19 C 1.39764 * 109.72743 * 359.97438 * 14 13 12 20 20 C 1.32024 * 124.29627 * 119.97704 * 12 2 1 21 21 O 1.36223 * 122.59289 * 359.97438 * 20 12 2 22 22 H 1.09006 * 109.47104 * 60.00024 * 1 2 3 23 23 H 1.08998 * 109.46970 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47246 * 299.99954 * 1 2 3 25 25 H 0.96998 * 119.99777 * 179.97438 * 7 6 4 26 26 H 1.07999 * 119.90683 * 0.04954 * 15 14 13 27 27 H 1.08000 * 119.90434 * 180.02562 * 16 15 14 28 28 H 1.08000 * 119.70199 * 180.25411 * 17 16 15 29 29 H 1.08002 * 119.77396 * 179.77019 * 18 17 16 30 30 H 0.96703 * 114.00168 * 270.04650 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1206 4.0078 9 1 3.8063 -1.1211 4.0081 10 1 1.8269 -0.4202 5.2204 11 1 1.8258 -2.5204 4.0076 12 6 2.0323 -0.7104 -1.2305 13 16 1.6794 -2.3829 -1.6187 14 6 2.6167 -2.3077 -3.1052 15 6 2.8652 -3.2859 -4.0738 16 6 3.6410 -2.9917 -5.1697 17 6 4.1781 -1.7205 -5.3241 18 6 3.9533 -0.7556 -4.3911 19 6 3.1601 -1.0289 -3.2561 20 6 2.7941 -0.1520 -2.1530 21 8 3.2057 1.1445 -2.0786 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 0.7089 1.1612 3.4844 26 1 2.4460 -4.2747 -3.9604 27 1 3.8296 -3.7502 -5.9151 28 1 4.7832 -1.4968 -6.1903 29 1 4.3805 0.2275 -4.5226 30 1 2.6027 1.7733 -2.4982 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260920185.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:40 Heat of formation + Delta-G solvation = -10.062383 kcal Electronic energy + Delta-G solvation = -15314.549262 eV Core-core repulsion = 12779.915508 eV Total energy + Delta-G solvation = -2534.633754 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.41613 -37.32292 -34.63195 -32.93369 -30.91883 -30.68377 -27.64860 -25.21518 -23.20733 -22.61803 -20.79552 -19.65540 -17.59526 -16.84239 -16.38303 -15.38788 -15.00941 -14.80318 -14.33387 -13.86766 -13.60931 -12.93541 -12.78224 -12.40558 -11.77667 -11.65331 -11.27838 -11.05774 -10.95461 -10.66153 -10.51178 -10.32746 -10.15030 -9.91916 -9.63651 -9.27041 -9.03579 -8.43248 -7.88185 -7.12810 -6.07766 -4.14991 1.15557 1.47508 2.04077 2.61965 2.70286 3.30228 3.33899 3.38013 3.94391 4.38843 4.73140 4.96280 5.07384 5.24332 5.29443 5.54297 5.71189 5.85729 6.12195 6.28716 6.36494 6.58415 6.65553 6.71261 6.78910 7.00181 7.09666 7.11122 7.58720 7.79193 7.96759 8.16663 8.26263 8.85710 9.49763 10.98105 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.034177 B = 0.006697 C = 0.006313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.071362 B = 4179.929991 C = 4434.571882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.099 3.901 3 H 0.055 0.945 4 C -0.512 4.512 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.889 5.889 8 Si 0.896 3.104 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.275 1.275 12 C -0.107 4.107 13 S 0.120 5.880 14 C -0.158 4.158 15 C -0.080 4.080 16 C -0.120 4.120 17 C -0.127 4.127 18 C -0.081 4.081 19 C -0.075 4.075 20 C 0.040 3.960 21 O -0.470 6.470 22 H 0.011 0.989 23 H 0.030 0.970 24 H 0.091 0.909 25 H 0.263 0.737 26 H 0.123 0.877 27 H 0.123 0.877 28 H 0.121 0.879 29 H 0.122 0.878 30 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.918 -4.292 -13.037 13.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.079 3.921 3 H 0.073 0.927 4 C -0.551 4.551 5 H 0.077 0.923 6 C -0.137 4.137 7 N -0.527 5.527 8 Si 0.723 3.277 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.201 1.201 12 C -0.223 4.223 13 S 0.384 5.616 14 C -0.274 4.274 15 C -0.103 4.103 16 C -0.141 4.141 17 C -0.147 4.147 18 C -0.101 4.101 19 C -0.084 4.084 20 C -0.014 4.014 21 O -0.277 6.277 22 H 0.030 0.970 23 H 0.049 0.951 24 H 0.109 0.891 25 H 0.073 0.927 26 H 0.141 0.859 27 H 0.141 0.859 28 H 0.139 0.861 29 H 0.140 0.860 30 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 1.456 -5.485 -11.793 13.087 hybrid contribution 0.826 0.904 -0.062 1.226 sum 2.283 -4.581 -11.854 12.912 Atomic orbital electron populations 1.21854 0.97160 0.99586 1.00709 1.17598 0.92732 0.95698 0.86056 0.92697 1.21026 1.31821 1.12584 0.89643 0.92283 1.24919 0.94848 0.94938 0.98954 1.69862 1.36361 1.22687 1.23774 0.86582 0.79376 0.79781 0.81925 1.20122 1.21133 1.20069 1.25090 0.99097 0.96744 1.01404 1.84158 1.52320 1.11020 1.14105 1.22785 1.05547 0.97520 1.01502 1.20416 0.99149 0.97581 0.93144 1.20909 0.98656 0.96906 0.97659 1.20585 1.01255 0.93583 0.99320 1.20620 0.97255 0.99589 0.92588 1.19456 0.99926 0.93255 0.95785 1.17741 1.02805 0.86193 0.94704 1.84985 1.49423 1.13140 1.80168 0.97023 0.95083 0.89052 0.92710 0.85950 0.85884 0.86114 0.86019 0.77299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.20 8.87 37.16 0.33 -2.87 16 2 C 0.10 2.49 2.61 -92.92 -0.24 2.25 16 3 H 0.06 1.49 7.43 -51.93 -0.39 1.11 16 4 C -0.51 -14.08 8.42 -34.44 -0.29 -14.37 16 5 H 0.06 1.64 7.74 -52.48 -0.41 1.23 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 7 N -0.89 -24.95 11.32 55.43 0.63 -24.32 16 8 Si 0.90 21.34 29.54 -169.99 -5.02 16.32 16 9 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 10 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 12 C -0.11 -2.37 4.95 -36.23 -0.18 -2.55 16 13 S 0.12 2.33 22.74 -107.50 -2.44 -0.12 16 14 C -0.16 -2.81 6.48 -38.39 -0.25 -3.06 16 15 C -0.08 -1.16 10.07 -39.25 -0.40 -1.56 16 16 C -0.12 -1.51 10.03 -39.63 -0.40 -1.91 16 17 C -0.13 -1.62 9.95 -40.12 -0.40 -2.02 16 18 C -0.08 -1.23 10.03 -39.25 -0.39 -1.63 16 19 C -0.07 -1.38 6.05 -105.29 -0.64 -2.01 16 20 C 0.04 0.82 6.88 -38.57 -0.27 0.55 16 21 O -0.47 -9.06 12.83 -20.45 -0.26 -9.32 16 22 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 23 H 0.03 0.70 7.93 -51.93 -0.41 0.29 16 24 H 0.09 2.36 6.07 -51.93 -0.32 2.05 16 25 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 26 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 27 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 28 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 29 H 0.12 1.65 8.06 -52.49 -0.42 1.23 16 30 H 0.37 5.36 9.07 45.56 0.41 5.78 16 LS Contribution 274.32 15.07 4.13 4.13 Total: -1.00 -30.05 274.32 -8.53 -38.58 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: -2.35 Total: 2.21 kcal Atomic # 6 Polarization: -24.27 SS G_CDS: -3.21 Total: -27.48 kcal Atomic # 7 Polarization: -24.95 SS G_CDS: 0.63 Total: -24.32 kcal Atomic # 8 Polarization: -9.06 SS G_CDS: -0.26 Total: -9.32 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: 2.33 SS G_CDS: -2.44 Total: -0.12 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -30.05 -8.53 -38.58 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260920185.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.518 kcal (2) G-P(sol) polarization free energy of solvation -30.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds