Wall clock time and date at job start Mon Mar 30 2020 06:14:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35604 * 117.00017 * 2 1 4 4 C 1.39729 * 126.78799 * 90.02911 * 3 2 1 5 5 C 1.39438 * 125.61791 * 359.95849 * 4 3 2 6 6 H 1.08001 * 119.99921 * 6.08926 * 5 4 3 7 7 C 1.40160 * 120.00348 * 186.08566 * 5 4 3 8 8 N 1.30846 * 119.99634 * 6.52503 * 7 5 4 9 9 Si 1.86798 * 119.99954 * 186.24717 * 7 5 4 10 10 H 1.48502 * 109.47051 * 265.29059 * 9 7 5 11 11 H 1.48503 * 109.47394 * 25.28795 * 9 7 5 12 12 H 1.48503 * 109.46883 * 145.29134 * 9 7 5 13 13 O 1.35214 * 108.77169 * 179.70026 * 4 3 2 14 14 C 1.35219 * 110.07453 * 0.26291 * 13 4 3 15 15 C 1.38723 * 132.48216 * 179.97438 * 14 13 4 16 16 C 1.38014 * 120.15845 * 179.97438 * 15 14 13 17 17 C 1.39227 * 120.65647 * 359.97438 * 16 15 14 18 18 O 1.35985 * 119.91342 * 179.97438 * 17 16 15 19 19 C 1.42905 * 116.99835 * 0.02562 * 18 17 16 20 20 C 1.38042 * 120.17243 * 0.02562 * 17 16 15 21 21 C 1.40113 * 119.60408 * 0.02562 * 20 17 16 22 22 H 1.09004 * 109.47155 * 299.99750 * 1 2 3 23 23 H 1.08996 * 109.46986 * 59.99676 * 1 2 3 24 24 H 1.09002 * 109.46879 * 179.97438 * 1 2 3 25 25 H 0.97003 * 119.99832 * 179.72360 * 8 7 5 26 26 H 1.08003 * 119.92440 * 0.02562 * 15 14 13 27 27 H 1.08007 * 119.67182 * 179.97438 * 16 15 14 28 28 H 1.09000 * 109.47311 * 59.99967 * 19 18 17 29 29 H 1.08998 * 109.46675 * 179.97438 * 19 18 17 30 30 H 1.08999 * 109.46796 * 299.99885 * 19 18 17 31 31 H 1.07998 * 120.19856 * 179.97438 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0446 1.2082 0.0000 4 6 2.4250 1.9536 1.1190 5 6 2.2336 1.5781 2.4482 6 1 1.8448 0.5979 2.6818 7 6 2.5456 2.4726 3.4811 8 7 2.8946 3.7017 3.1989 9 14 2.4558 1.9123 5.2608 10 1 1.1289 2.2673 5.8252 11 1 2.6440 0.4407 5.3266 12 1 3.5231 2.5835 6.0455 13 8 3.0146 3.0963 0.7008 14 6 3.0348 3.1405 -0.6505 15 6 3.5177 4.0797 -1.5500 16 6 3.4033 3.8620 -2.9081 17 6 2.8050 2.7021 -3.3932 18 8 2.6998 2.5033 -4.7343 19 6 3.2247 3.5248 -5.5847 20 6 2.3175 1.7540 -2.5163 21 6 2.4279 1.9663 -1.1357 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 3.1067 4.3220 3.9139 26 1 3.9851 4.9831 -1.1868 27 1 3.7816 4.5986 -3.6014 28 1 4.2899 3.6482 -5.3896 29 1 3.0769 3.2413 -6.6268 30 1 2.7078 4.4637 -5.3864 31 1 1.8530 0.8544 -2.8921 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260942539.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:34 Heat of formation + Delta-G solvation = -84.342665 kcal Electronic energy + Delta-G solvation = -17692.533757 eV Core-core repulsion = 14711.926097 eV Total energy + Delta-G solvation = -2980.607660 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.088 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.66074 -40.34523 -38.50415 -37.20399 -35.70997 -32.70174 -31.00478 -30.56371 -28.02614 -27.83441 -26.69813 -23.61401 -22.73216 -21.65575 -19.91437 -18.67725 -18.56191 -17.24523 -16.84421 -16.65702 -16.41256 -16.27248 -15.75991 -15.46099 -15.39208 -14.67776 -14.15236 -14.06656 -13.50034 -13.25690 -13.15877 -13.13706 -12.94104 -12.61508 -12.39843 -12.01921 -11.70109 -11.61451 -11.34921 -10.55263 -10.41768 -9.18589 -9.00257 -8.72845 -6.64984 0.25114 0.71626 1.21302 1.35497 1.55032 1.76693 2.09807 2.40843 2.58971 2.88559 2.91558 3.50650 3.95026 4.21225 4.33610 4.48326 4.49360 4.52382 4.61605 4.69070 4.75295 4.77125 4.80686 4.83052 4.94994 5.26593 5.36785 5.46882 5.66603 5.67221 5.95746 6.12564 6.33760 6.60848 6.89065 7.19172 7.98250 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.033516 B = 0.006571 C = 0.005587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.210909 B = 4260.101226 C = 5010.331100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.303 6.303 3 C -0.256 4.256 4 C 0.208 3.792 5 C -0.429 4.429 6 H 0.119 0.881 7 C 0.023 3.977 8 N -0.783 5.783 9 Si 1.011 2.989 10 H -0.252 1.252 11 H -0.250 1.250 12 H -0.258 1.258 13 O -0.188 6.188 14 C -0.078 4.078 15 C -0.053 4.053 16 C -0.233 4.233 17 C 0.128 3.872 18 O -0.337 6.337 19 C 0.019 3.981 20 C -0.195 4.195 21 C -0.044 4.044 22 H 0.029 0.971 23 H 0.025 0.975 24 H 0.108 0.892 25 H 0.305 0.695 26 H 0.141 0.859 27 H 0.165 0.835 28 H 0.064 0.936 29 H 0.121 0.879 30 H 0.064 0.936 31 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.118 1.991 -5.074 5.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.218 6.218 3 C -0.303 4.303 4 C 0.156 3.844 5 C -0.455 4.455 6 H 0.137 0.863 7 C -0.198 4.198 8 N -0.406 5.406 9 Si 0.828 3.172 10 H -0.176 1.176 11 H -0.173 1.173 12 H -0.181 1.181 13 O -0.091 6.091 14 C -0.123 4.123 15 C -0.072 4.072 16 C -0.252 4.252 17 C 0.083 3.917 18 O -0.252 6.252 19 C -0.075 4.075 20 C -0.215 4.215 21 C -0.046 4.046 22 H 0.047 0.953 23 H 0.044 0.956 24 H 0.126 0.874 25 H 0.117 0.883 26 H 0.159 0.841 27 H 0.183 0.817 28 H 0.082 0.918 29 H 0.139 0.861 30 H 0.082 0.918 31 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 0.067 2.118 -4.995 5.426 hybrid contribution -0.304 0.160 0.514 0.618 sum -0.238 2.278 -4.481 5.032 Atomic orbital electron populations 1.23134 0.82960 1.02577 0.98944 1.85992 1.18645 1.23619 1.93590 1.18133 1.24893 0.97334 0.89906 1.20117 0.88500 0.81302 0.94493 1.19430 1.36219 1.02624 0.87205 0.86279 1.27437 0.90817 0.93608 1.07975 1.69825 1.26470 1.05268 1.39056 0.84748 0.79981 0.80291 0.72210 1.17577 1.17267 1.18138 1.84607 1.67545 1.38373 1.18557 1.19970 1.10203 0.99081 0.83045 1.19847 0.99368 0.97180 0.90770 1.20886 1.10212 0.99557 0.94516 1.18572 0.96342 0.94007 0.82783 1.86013 1.78156 1.47473 1.13560 1.23337 0.99259 0.90766 0.94180 1.19448 1.11124 1.01229 0.89667 1.18803 0.97852 0.94381 0.93552 0.95265 0.95644 0.87419 0.88330 0.84120 0.81743 0.91781 0.86062 0.91781 0.87071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.78 11.13 113.37 1.26 2.04 16 2 O -0.30 -15.73 10.52 -89.15 -0.94 -16.67 16 3 C -0.26 -14.40 6.45 23.52 0.15 -14.25 16 4 C 0.21 11.96 6.74 22.92 0.15 12.11 16 5 C -0.43 -22.72 9.25 23.03 0.21 -22.51 16 6 H 0.12 5.99 7.86 -2.91 -0.02 5.97 16 7 C 0.02 1.11 5.49 85.31 0.47 1.58 16 8 N -0.78 -39.26 12.03 21.87 0.26 -38.99 16 9 Si 1.01 34.47 29.57 68.60 2.03 36.50 16 10 H -0.25 -8.08 7.11 99.48 0.71 -7.38 16 11 H -0.25 -8.29 7.11 99.48 0.71 -7.59 16 12 H -0.26 -8.21 7.11 99.48 0.71 -7.50 16 13 O -0.19 -10.90 8.98 -20.98 -0.19 -11.08 16 14 C -0.08 -4.07 7.35 23.01 0.17 -3.90 16 15 C -0.05 -2.24 10.05 22.33 0.22 -2.02 16 16 C -0.23 -8.49 9.02 22.45 0.20 -8.29 16 17 C 0.13 5.14 6.68 22.46 0.15 5.29 16 18 O -0.34 -11.43 10.49 -93.38 -0.98 -12.41 16 19 C 0.02 0.40 9.81 113.37 1.11 1.51 16 20 C -0.20 -9.28 10.05 22.68 0.23 -9.05 16 21 C -0.04 -2.38 6.17 -21.31 -0.13 -2.51 16 22 H 0.03 1.21 8.14 -2.38 -0.02 1.19 16 23 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 24 H 0.11 3.55 8.14 -2.39 -0.02 3.53 16 25 H 0.31 13.30 8.30 -92.71 -0.77 12.53 16 26 H 0.14 5.13 8.06 -2.91 -0.02 5.11 16 27 H 0.17 4.41 6.26 -2.91 -0.02 4.39 16 28 H 0.06 1.22 7.65 -2.39 -0.02 1.20 16 29 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.06 1.21 7.65 -2.39 -0.02 1.20 16 31 H 0.11 5.17 8.06 -2.91 -0.02 5.14 16 Total: -1.00 -67.58 277.51 5.54 -62.04 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: 1.15 Total: 20.62 kcal Atomic # 6 Polarization: -44.20 SS G_CDS: 4.20 Total: -40.00 kcal Atomic # 7 Polarization: -39.26 SS G_CDS: 0.26 Total: -38.99 kcal Atomic # 8 Polarization: -38.05 SS G_CDS: -2.11 Total: -40.16 kcal Atomic # 14 Polarization: 34.47 SS G_CDS: 2.03 Total: 36.50 kcal Total: -67.58 5.54 -62.04 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260942539.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.305 kcal (2) G-P(sol) polarization free energy of solvation -67.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds