Wall clock time and date at job start Mon Mar 30 2020 06:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86807 * 119.99823 * 2 1 4 4 H 1.48493 * 109.47032 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46969 * 300.00971 * 3 2 1 6 6 H 1.48500 * 109.46872 * 60.00717 * 3 2 1 7 7 C 1.37874 * 120.00406 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00338 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99560 * 359.97438 * 7 2 1 10 10 H 1.09003 * 110.36827 * 302.18303 * 9 7 2 11 11 C 1.54130 * 110.33108 * 64.36777 * 9 7 2 12 12 C 1.54223 * 101.72496 * 145.47133 * 11 9 7 13 13 C 1.52106 * 104.84362 * 333.51993 * 12 11 9 14 14 S 1.76534 * 139.40144 * 197.42682 * 13 12 11 15 15 C 1.75576 * 91.08486 * 179.97438 * 14 13 12 16 16 C 1.32629 * 109.65161 * 0.23302 * 15 14 13 17 17 C 1.50695 * 122.18420 * 180.02562 * 16 15 14 18 18 C 1.52995 * 109.47166 * 264.53167 * 17 16 15 19 19 C 1.53006 * 117.50084 * 243.74504 * 18 17 16 20 20 C 1.53004 * 117.49879 * 175.08969 * 18 17 16 21 21 C 1.33824 * 110.67678 * 17.42288 * 13 12 11 22 22 H 0.97001 * 120.00552 * 359.97438 * 1 2 3 23 23 H 1.09002 * 110.97585 * 27.36787 * 11 9 7 24 24 H 1.08993 * 111.01251 * 263.59589 * 11 9 7 25 25 H 1.09000 * 110.36576 * 214.67428 * 12 11 9 26 26 H 1.09001 * 110.36516 * 92.36208 * 12 11 9 27 27 H 1.08002 * 125.17860 * 180.02562 * 15 14 13 28 28 H 1.09000 * 109.47359 * 24.53562 * 17 16 15 29 29 H 1.09007 * 109.47347 * 144.53335 * 17 16 15 30 30 H 1.08999 * 115.55038 * 29.41709 * 18 17 16 31 31 H 1.08998 * 117.49659 * 0.02562 * 19 18 17 32 32 H 1.09001 * 117.49771 * 145.02016 * 19 18 17 33 33 H 1.09006 * 117.49792 * 214.97861 * 20 18 17 34 34 H 1.08995 * 117.49877 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8902 2.3966 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.5904 -2.5557 0.8646 11 6 0.4414 -2.6500 -1.3033 12 6 0.5237 -4.1703 -1.5492 13 6 1.8126 -4.6058 -0.8690 14 16 2.9359 -5.9676 -0.8722 15 6 3.9400 -5.1852 0.3371 16 6 3.4110 -4.0145 0.6665 17 6 4.0473 -3.1043 1.6851 18 6 3.4035 -3.3405 3.0528 19 6 2.6326 -2.1778 3.6812 20 6 3.9924 -2.5911 4.2497 21 6 2.2267 -3.6751 -0.0011 22 1 -0.4851 0.8400 0.0004 23 1 0.9076 -2.0971 -2.1188 24 1 -0.5917 -2.3332 -1.1603 25 1 0.5692 -4.3798 -2.6179 26 1 -0.3317 -4.6742 -1.0992 27 1 4.8484 -5.5963 0.7523 28 1 5.1149 -3.3157 1.7447 29 1 3.8985 -2.0661 1.3880 30 1 3.0248 -4.3477 3.2265 31 1 2.5838 -1.2447 3.1199 32 1 1.7469 -2.4201 4.2685 33 1 4.0007 -3.1051 5.2109 34 1 4.8387 -1.9301 4.0628 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260947804.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:45 Heat of formation + Delta-G solvation = 36.123270 kcal Electronic energy + Delta-G solvation = -16088.826763 eV Core-core repulsion = 13692.028864 eV Total energy + Delta-G solvation = -2396.797899 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.46152 -38.18722 -35.85671 -34.30270 -30.36497 -29.28074 -27.80765 -25.68627 -23.15396 -22.48348 -21.75867 -20.97599 -18.99858 -18.46953 -17.71627 -16.48945 -16.23675 -15.81803 -15.22197 -14.87889 -14.56679 -14.02073 -13.67178 -13.43595 -13.31547 -13.10218 -12.76699 -12.54030 -12.36621 -12.31002 -12.19674 -12.08887 -11.83308 -11.58100 -11.15010 -10.98544 -10.90896 -10.62039 -10.44795 -9.18183 -8.87798 -8.06894 -6.13927 0.29903 0.80188 1.24897 1.38624 1.42239 1.51479 1.97962 2.46172 3.03695 3.23917 3.91944 3.98825 4.06090 4.13022 4.21935 4.38310 4.47321 4.50819 4.76031 4.78676 4.85166 4.91984 4.97260 5.04786 5.13968 5.19231 5.32540 5.35939 5.40762 5.55269 5.61804 5.77771 5.81059 5.92946 6.00501 6.40336 6.91307 7.51121 9.01429 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.016813 B = 0.010616 C = 0.007402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.943548 B = 2636.854191 C = 3781.609126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.019 3.981 3 Si 0.939 3.061 4 H -0.268 1.268 5 H -0.284 1.284 6 H -0.282 1.282 7 C -0.503 4.503 8 H 0.054 0.946 9 C 0.104 3.896 10 H 0.006 0.994 11 C -0.086 4.086 12 C -0.038 4.038 13 C -0.240 4.240 14 S 0.108 5.892 15 C -0.220 4.220 16 C -0.083 4.083 17 C -0.034 4.034 18 C -0.140 4.140 19 C -0.191 4.191 20 C -0.159 4.159 21 C -0.100 4.100 22 H 0.259 0.741 23 H 0.041 0.959 24 H 0.053 0.947 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.190 0.810 28 H 0.084 0.916 29 H 0.065 0.935 30 H 0.098 0.902 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.112 0.888 34 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.878 -9.124 2.820 11.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.179 4.179 3 Si 0.766 3.234 4 H -0.192 1.192 5 H -0.210 1.210 6 H -0.208 1.208 7 C -0.541 4.541 8 H 0.072 0.928 9 C 0.084 3.916 10 H 0.024 0.976 11 C -0.125 4.125 12 C -0.077 4.077 13 C -0.356 4.356 14 S 0.373 5.627 15 C -0.354 4.354 16 C -0.095 4.095 17 C -0.073 4.073 18 C -0.158 4.158 19 C -0.228 4.228 20 C -0.196 4.196 21 C -0.112 4.112 22 H 0.068 0.932 23 H 0.060 0.940 24 H 0.072 0.928 25 H 0.095 0.905 26 H 0.095 0.905 27 H 0.208 0.792 28 H 0.103 0.897 29 H 0.084 0.916 30 H 0.116 0.884 31 H 0.092 0.908 32 H 0.106 0.894 33 H 0.130 0.870 34 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 6.841 -10.449 2.020 12.652 hybrid contribution -0.179 2.559 0.652 2.647 sum 6.662 -7.890 2.673 10.667 Atomic orbital electron populations 1.70063 1.06958 1.26897 1.51908 1.25569 0.95455 1.01595 0.95316 0.85788 0.79390 0.80816 0.77455 1.19198 1.20984 1.20812 1.21267 0.92686 0.90787 1.49358 0.92806 1.18139 0.90405 0.89763 0.93276 0.97592 1.22045 0.99678 0.92471 0.98328 1.20844 0.91519 0.96065 0.99276 1.25991 1.03806 0.99164 1.06660 1.83235 1.17592 1.19793 1.42032 1.25343 1.06143 0.98948 1.05014 1.18612 0.95183 0.96126 0.99608 1.19988 0.98312 0.98545 0.90504 1.22086 1.04181 0.96513 0.93065 1.22915 0.95963 0.99448 1.04441 1.23060 0.96074 1.03061 0.97393 1.21047 0.95950 0.97731 0.96433 0.93205 0.93992 0.92789 0.90547 0.90450 0.79240 0.89711 0.91632 0.88406 0.90759 0.89446 0.87020 0.88338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.49 12.52 21.45 0.27 -52.22 16 2 C 0.02 1.05 5.34 84.65 0.45 1.50 16 3 Si 0.94 43.42 29.54 68.60 2.03 45.45 16 4 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 5 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 6 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 7 C -0.50 -27.08 7.67 25.60 0.20 -26.88 16 8 H 0.05 2.91 6.07 -2.91 -0.02 2.89 16 9 C 0.10 5.30 2.77 -11.22 -0.03 5.26 16 10 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 11 C -0.09 -4.05 5.80 31.39 0.18 -3.87 16 12 C -0.04 -1.45 6.80 30.71 0.21 -1.24 16 13 C -0.24 -9.48 7.35 25.13 0.18 -9.29 16 14 S 0.11 3.34 23.35 -56.49 -1.32 2.02 16 15 C -0.22 -6.84 10.89 66.66 0.73 -6.12 16 16 C -0.08 -3.12 5.03 -20.57 -0.10 -3.22 16 17 C -0.03 -1.19 5.68 29.84 0.17 -1.02 16 18 C -0.14 -4.51 5.72 -10.79 -0.06 -4.58 16 19 C -0.19 -6.61 10.18 30.62 0.31 -6.30 16 20 C -0.16 -4.25 10.25 30.62 0.31 -3.94 16 21 C -0.10 -4.40 5.68 -19.73 -0.11 -4.51 16 22 H 0.26 14.16 8.31 -92.71 -0.77 13.39 16 23 H 0.04 2.08 7.92 -2.39 -0.02 2.06 16 24 H 0.05 2.67 7.98 -2.39 -0.02 2.65 16 25 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 26 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 27 H 0.19 4.48 8.06 -2.91 -0.02 4.45 16 28 H 0.08 2.45 8.08 -2.39 -0.02 2.43 16 29 H 0.07 2.72 5.29 -2.38 -0.01 2.70 16 30 H 0.10 3.08 8.07 -2.39 -0.02 3.06 16 31 H 0.07 3.04 8.03 -2.39 -0.02 3.02 16 32 H 0.09 2.92 8.14 -2.39 -0.02 2.90 16 33 H 0.11 2.42 8.14 -2.38 -0.02 2.40 16 34 H 0.10 2.46 8.14 -2.39 -0.02 2.45 16 Total: -1.00 -59.17 292.54 4.50 -54.67 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: 1.08 Total: 14.27 kcal Atomic # 6 Polarization: -66.64 SS G_CDS: 2.44 Total: -64.20 kcal Atomic # 7 Polarization: -52.49 SS G_CDS: 0.27 Total: -52.22 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Atomic # 16 Polarization: 3.34 SS G_CDS: -1.32 Total: 2.02 kcal Total: -59.17 4.50 -54.67 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260947804.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.796 kcal (2) G-P(sol) polarization free energy of solvation -59.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds