Wall clock time and date at job start Mon Mar 30 2020 06:14:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36158 * 117.00245 * 2 1 4 4 C 1.34242 * 126.93202 * 90.02277 * 3 2 1 5 5 C 1.50700 * 124.96807 * 359.96069 * 4 3 2 6 6 C 1.50702 * 109.46869 * 89.72321 * 5 4 3 7 7 H 1.08002 * 120.00299 * 0.02562 * 6 5 4 8 8 C 1.37884 * 119.99942 * 179.72213 * 6 5 4 9 9 N 1.31514 * 119.99698 * 0.28408 * 8 6 5 10 10 Si 1.86794 * 119.99837 * 180.27476 * 8 6 5 11 11 H 1.48496 * 109.47341 * 0.02562 * 10 8 6 12 12 H 1.48508 * 109.46983 * 120.00379 * 10 8 6 13 13 H 1.48503 * 109.47491 * 240.00192 * 10 8 6 14 14 O 1.34793 * 110.06583 * 179.69936 * 4 3 2 15 15 C 1.34810 * 110.90104 * 0.26718 * 14 4 3 16 16 C 1.38923 * 133.36275 * 179.97438 * 15 14 4 17 17 C 1.38307 * 119.77388 * 180.02562 * 16 15 14 18 18 O 1.35929 * 119.71796 * 180.02562 * 17 16 15 19 19 C 1.39213 * 120.56465 * 0.03078 * 17 16 15 20 20 C 1.36665 * 120.35844 * 359.97048 * 19 17 16 21 21 C 1.39414 * 119.79567 * 0.02562 * 20 19 17 22 22 H 1.09008 * 109.46875 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.47202 * 299.99936 * 1 2 3 24 24 H 1.09002 * 109.46822 * 60.00718 * 1 2 3 25 25 H 1.09004 * 109.47210 * 329.72614 * 5 4 3 26 26 H 1.08994 * 109.47551 * 209.72267 * 5 4 3 27 27 H 0.97005 * 119.99651 * 179.97438 * 9 8 6 28 28 H 1.08003 * 120.10976 * 0.02562 * 16 15 14 29 29 H 0.96694 * 114.00069 * 90.00283 * 18 17 16 30 30 H 1.07994 * 119.82369 * 179.97438 * 19 17 16 31 31 H 1.07997 * 120.10412 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0472 1.2131 0.0000 4 6 2.4138 1.9316 1.0731 5 6 2.2010 1.5146 2.5055 6 6 3.3927 0.7240 2.9808 7 1 4.2215 0.5421 2.3126 8 6 3.4277 0.2382 4.2708 9 7 2.4187 0.4600 5.0845 10 14 4.9082 -0.7352 4.8622 11 1 5.9004 -0.8442 3.7628 12 1 5.5270 -0.0404 6.0198 13 1 4.4745 -2.0942 5.2748 14 8 3.0053 3.0780 0.6820 15 6 3.0467 3.1633 -0.6628 16 6 3.5382 4.1190 -1.5432 17 6 3.4305 3.9163 -2.9071 18 8 3.9122 4.8519 -3.7675 19 6 2.8327 2.7624 -3.4062 20 6 2.3444 1.8130 -2.5530 21 6 2.4452 2.0019 -1.1754 22 1 -0.3633 -1.0278 0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5137 -0.8901 25 1 1.3047 0.8981 2.5751 26 1 2.0814 2.4012 3.1281 27 1 2.4432 0.1179 5.9919 28 1 4.0029 5.0171 -1.1639 29 1 4.8363 4.7169 -4.0182 30 1 2.7545 2.6165 -4.4734 31 1 1.8818 0.9191 -2.9447 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260991634.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:15 Heat of formation + Delta-G solvation = -56.357827 kcal Electronic energy + Delta-G solvation = -17472.212784 eV Core-core repulsion = 14492.818638 eV Total energy + Delta-G solvation = -2979.394146 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.088 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.02202 -38.89999 -37.59381 -35.92520 -33.47102 -31.48899 -30.17715 -29.87038 -27.12255 -26.06854 -23.64861 -22.64105 -21.36491 -20.46051 -18.37970 -17.00556 -16.79897 -16.61805 -15.69881 -15.58660 -14.90191 -14.64873 -14.48626 -14.38062 -13.68142 -13.60156 -12.90339 -12.44146 -12.07928 -11.79193 -11.66280 -11.41041 -11.30543 -10.87772 -10.77932 -10.57426 -10.10882 -9.69764 -9.33660 -9.23914 -8.54297 -8.38812 -7.44202 -6.16319 -4.20982 1.10040 1.47401 2.66736 3.06635 3.26367 3.33709 3.40311 3.72910 4.15618 4.37937 4.40839 4.79695 5.06279 5.19587 5.24926 5.41298 5.54214 5.64088 5.75072 5.85795 5.92139 6.03778 6.33933 6.42617 6.45748 6.65088 6.65776 7.08729 7.22793 7.59982 7.74966 7.78282 7.99914 8.09612 8.80658 9.42966 10.93427 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.028026 B = 0.006092 C = 0.005474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.815990 B = 4595.137297 C = 5114.325518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.287 6.287 3 C -0.043 4.043 4 C 0.096 3.904 5 C 0.085 3.915 6 C -0.515 4.515 7 H 0.062 0.938 8 C 0.062 3.938 9 N -0.893 5.893 10 Si 0.903 3.097 11 H -0.271 1.271 12 H -0.282 1.282 13 H -0.281 1.281 14 O -0.180 6.180 15 C 0.060 3.940 16 C -0.130 4.130 17 C 0.112 3.888 18 O -0.495 6.495 19 C -0.161 4.161 20 C -0.057 4.057 21 C -0.135 4.135 22 H 0.089 0.911 23 H 0.047 0.953 24 H 0.036 0.964 25 H 0.059 0.941 26 H 0.043 0.957 27 H 0.265 0.735 28 H 0.136 0.864 29 H 0.388 0.612 30 H 0.130 0.870 31 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.593 3.659 -13.835 14.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.203 6.203 3 C -0.088 4.088 4 C 0.047 3.953 5 C 0.048 3.952 6 C -0.553 4.553 7 H 0.080 0.920 8 C -0.140 4.140 9 N -0.531 5.531 10 Si 0.730 3.270 11 H -0.195 1.195 12 H -0.208 1.208 13 H -0.207 1.207 14 O -0.081 6.081 15 C 0.012 3.988 16 C -0.149 4.149 17 C 0.068 3.932 18 O -0.305 6.305 19 C -0.180 4.180 20 C -0.076 4.076 21 C -0.137 4.137 22 H 0.108 0.892 23 H 0.065 0.935 24 H 0.055 0.945 25 H 0.077 0.923 26 H 0.061 0.939 27 H 0.074 0.926 28 H 0.153 0.847 29 H 0.244 0.756 30 H 0.148 0.852 31 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -1.040 3.883 -13.437 14.025 hybrid contribution 0.987 -0.627 0.226 1.191 sum -0.053 3.256 -13.211 13.607 Atomic orbital electron populations 1.23013 0.80934 1.02549 1.00171 1.86201 1.18664 1.21975 1.93412 1.18710 1.09605 0.91153 0.89329 1.24047 0.90601 0.81589 0.99049 1.18228 0.99272 0.97365 0.80316 1.20949 1.02830 1.34024 0.97453 0.91980 1.24958 0.96670 0.96054 0.96314 1.69945 1.30673 1.45622 1.06876 0.86344 0.82302 0.79594 0.78724 1.19535 1.20779 1.20701 1.84215 1.66266 1.38034 1.19569 1.19154 1.01193 0.95950 0.82453 1.19982 1.04949 0.99247 0.90673 1.17822 0.99274 0.89039 0.87104 1.84831 1.32097 1.49892 1.63697 1.20891 1.03193 0.93747 1.00178 1.20058 0.98327 0.98691 0.90476 1.20190 1.03333 0.95638 0.94514 0.89228 0.93451 0.94483 0.92300 0.93853 0.92566 0.84652 0.75646 0.85221 0.85408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 11.14 101.05 1.13 1.58 16 2 O -0.29 -5.95 10.52 -20.24 -0.21 -6.16 16 3 C -0.04 -0.91 6.51 -37.42 -0.24 -1.16 16 4 C 0.10 2.22 6.44 -35.72 -0.23 1.99 16 5 C 0.08 2.18 5.43 -29.03 -0.16 2.02 16 6 C -0.51 -14.46 9.09 -34.44 -0.31 -14.77 16 7 H 0.06 1.77 7.74 -52.49 -0.41 1.36 16 8 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 9 N -0.89 -25.67 13.29 55.43 0.74 -24.93 16 10 Si 0.90 21.43 29.54 -169.99 -5.02 16.40 16 11 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 13 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 14 O -0.18 -3.94 10.59 2.95 0.03 -3.91 16 15 C 0.06 1.15 7.41 -38.48 -0.29 0.87 16 16 C -0.13 -2.03 10.00 -39.30 -0.39 -2.42 16 17 C 0.11 1.55 6.69 -39.19 -0.26 1.28 16 18 O -0.50 -5.60 13.49 -19.52 -0.26 -5.86 16 19 C -0.16 -2.16 9.91 -39.79 -0.39 -2.56 16 20 C -0.06 -0.88 10.04 -39.71 -0.40 -1.28 16 21 C -0.14 -2.57 6.40 -105.04 -0.67 -3.24 16 22 H 0.09 1.19 8.14 -51.92 -0.42 0.77 16 23 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.06 1.55 8.14 -51.93 -0.42 1.12 16 26 H 0.04 1.15 8.14 -51.93 -0.42 0.72 16 27 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 28 H 0.14 1.86 8.06 -52.48 -0.42 1.44 16 29 H 0.39 2.42 9.06 45.56 0.41 2.83 16 30 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 31 H 0.13 1.72 8.06 -52.49 -0.42 1.29 16 LS Contribution 283.27 15.07 4.27 4.27 Total: -1.00 -31.53 283.27 -5.29 -36.82 By element: Atomic # 1 Polarization: 1.94 SS G_CDS: -2.51 Total: -0.58 kcal Atomic # 6 Polarization: -13.74 SS G_CDS: -2.32 Total: -16.06 kcal Atomic # 7 Polarization: -25.67 SS G_CDS: 0.74 Total: -24.93 kcal Atomic # 8 Polarization: -15.48 SS G_CDS: -0.44 Total: -15.93 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -31.53 -5.29 -36.82 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260991634.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.534 kcal (2) G-P(sol) polarization free energy of solvation -31.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds