Wall clock time and date at job start Mon Mar 30 2020 06:14:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36158 * 117.00245 * 2 1 4 4 C 1.34242 * 126.93202 * 90.02277 * 3 2 1 5 5 C 1.50700 * 124.96807 * 359.96069 * 4 3 2 6 6 C 1.50702 * 109.46869 * 89.72321 * 5 4 3 7 7 H 1.08002 * 120.00299 * 0.02562 * 6 5 4 8 8 C 1.37884 * 119.99942 * 179.72213 * 6 5 4 9 9 N 1.31514 * 119.99698 * 0.28408 * 8 6 5 10 10 Si 1.86794 * 119.99837 * 180.27476 * 8 6 5 11 11 H 1.48496 * 109.47341 * 0.02562 * 10 8 6 12 12 H 1.48508 * 109.46983 * 120.00379 * 10 8 6 13 13 H 1.48503 * 109.47491 * 240.00192 * 10 8 6 14 14 O 1.34793 * 110.06583 * 179.69936 * 4 3 2 15 15 C 1.34810 * 110.90104 * 0.26718 * 14 4 3 16 16 C 1.38923 * 133.36275 * 179.97438 * 15 14 4 17 17 C 1.38307 * 119.77388 * 180.02562 * 16 15 14 18 18 O 1.35929 * 119.71796 * 180.02562 * 17 16 15 19 19 C 1.39213 * 120.56465 * 0.03078 * 17 16 15 20 20 C 1.36665 * 120.35844 * 359.97048 * 19 17 16 21 21 C 1.39414 * 119.79567 * 0.02562 * 20 19 17 22 22 H 1.09008 * 109.46875 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.47202 * 299.99936 * 1 2 3 24 24 H 1.09002 * 109.46822 * 60.00718 * 1 2 3 25 25 H 1.09004 * 109.47210 * 329.72614 * 5 4 3 26 26 H 1.08994 * 109.47551 * 209.72267 * 5 4 3 27 27 H 0.97005 * 119.99651 * 179.97438 * 9 8 6 28 28 H 1.08003 * 120.10976 * 0.02562 * 16 15 14 29 29 H 0.96694 * 114.00069 * 90.00283 * 18 17 16 30 30 H 1.07994 * 119.82369 * 179.97438 * 19 17 16 31 31 H 1.07997 * 120.10412 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0472 1.2131 0.0000 4 6 2.4138 1.9316 1.0731 5 6 2.2010 1.5146 2.5055 6 6 3.3927 0.7240 2.9808 7 1 4.2215 0.5421 2.3126 8 6 3.4277 0.2382 4.2708 9 7 2.4187 0.4600 5.0845 10 14 4.9082 -0.7352 4.8622 11 1 5.9004 -0.8442 3.7628 12 1 5.5270 -0.0404 6.0198 13 1 4.4745 -2.0942 5.2748 14 8 3.0053 3.0780 0.6820 15 6 3.0467 3.1633 -0.6628 16 6 3.5382 4.1190 -1.5432 17 6 3.4305 3.9163 -2.9071 18 8 3.9122 4.8519 -3.7675 19 6 2.8327 2.7624 -3.4062 20 6 2.3444 1.8130 -2.5530 21 6 2.4452 2.0019 -1.1754 22 1 -0.3633 -1.0278 0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5137 -0.8901 25 1 1.3047 0.8981 2.5751 26 1 2.0814 2.4012 3.1281 27 1 2.4432 0.1179 5.9919 28 1 4.0029 5.0171 -1.1639 29 1 4.8363 4.7169 -4.0182 30 1 2.7545 2.6165 -4.4734 31 1 1.8818 0.9191 -2.9447 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260991634.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:15 Heat of formation + Delta-G solvation = -78.540687 kcal Electronic energy + Delta-G solvation = -17473.174705 eV Core-core repulsion = 14492.818638 eV Total energy + Delta-G solvation = -2980.356067 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.088 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.50274 -40.02431 -39.12930 -37.06731 -35.52185 -33.11559 -31.50651 -31.45673 -28.60699 -27.62133 -25.42503 -24.01996 -22.74881 -21.97500 -19.61011 -18.78383 -18.29345 -18.03584 -17.31020 -17.00646 -16.53921 -16.03811 -15.92230 -15.70015 -15.10284 -14.89417 -14.44360 -14.27821 -13.85648 -13.30217 -12.96431 -12.83332 -12.76505 -12.62002 -12.61078 -12.07650 -11.70438 -11.63936 -10.87225 -10.69239 -10.65283 -9.66709 -8.95185 -8.27846 -6.43100 -0.18506 0.23709 1.11516 1.38909 1.39442 1.52768 1.62181 2.37665 2.51007 2.74827 3.03010 3.30388 3.43829 3.85158 4.02630 4.10637 4.30398 4.39732 4.47212 4.53469 4.66352 4.76280 4.95573 5.04092 5.11423 5.15296 5.27390 5.30707 5.59989 5.61454 5.95481 6.12769 6.52219 6.62933 6.82329 7.25054 8.80750 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.028026 B = 0.006092 C = 0.005474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.815990 B = 4595.137297 C = 5114.325518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.313 6.313 3 C -0.029 4.029 4 C 0.047 3.953 5 C 0.097 3.903 6 C -0.537 4.537 7 H 0.050 0.950 8 C 0.014 3.986 9 N -0.923 5.923 10 Si 0.971 3.029 11 H -0.270 1.270 12 H -0.271 1.271 13 H -0.270 1.270 14 O -0.201 6.201 15 C 0.040 3.960 16 C -0.144 4.144 17 C 0.141 3.859 18 O -0.494 6.494 19 C -0.147 4.147 20 C -0.054 4.054 21 C -0.163 4.163 22 H 0.118 0.882 23 H 0.034 0.966 24 H 0.060 0.940 25 H 0.042 0.958 26 H 0.019 0.981 27 H 0.271 0.729 28 H 0.150 0.850 29 H 0.416 0.584 30 H 0.170 0.830 31 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.209 3.538 -16.730 17.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.229 6.229 3 C -0.074 4.074 4 C -0.002 4.002 5 C 0.060 3.940 6 C -0.575 4.575 7 H 0.068 0.932 8 C -0.185 4.185 9 N -0.562 5.562 10 Si 0.795 3.205 11 H -0.194 1.194 12 H -0.196 1.196 13 H -0.195 1.195 14 O -0.103 6.103 15 C -0.007 4.007 16 C -0.163 4.163 17 C 0.096 3.904 18 O -0.308 6.308 19 C -0.166 4.166 20 C -0.072 4.072 21 C -0.164 4.164 22 H 0.136 0.864 23 H 0.052 0.948 24 H 0.078 0.922 25 H 0.060 0.940 26 H 0.038 0.962 27 H 0.080 0.920 28 H 0.167 0.833 29 H 0.277 0.723 30 H 0.188 0.812 31 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -0.227 3.770 -16.352 16.783 hybrid contribution 0.727 -0.485 0.872 1.234 sum 0.499 3.285 -15.480 15.833 Atomic orbital electron populations 1.23244 0.78330 1.04630 1.00672 1.86097 1.21170 1.22019 1.93644 1.18972 1.07863 0.90459 0.90119 1.23430 0.94803 0.83650 0.98270 1.17788 0.98005 0.95826 0.82347 1.21193 1.03362 1.34950 0.97963 0.93183 1.25843 0.99630 0.96828 0.96217 1.70041 1.32447 1.46351 1.07344 0.85310 0.78587 0.78402 0.78245 1.19420 1.19633 1.19536 1.84097 1.66942 1.37667 1.21607 1.19684 1.02168 0.97379 0.81423 1.20291 1.05448 0.99316 0.91254 1.17896 0.97219 0.88825 0.86510 1.84773 1.34369 1.49039 1.62584 1.21299 1.01011 0.92403 1.01847 1.20372 0.97877 1.00061 0.88847 1.20282 1.05209 0.95399 0.95507 0.86377 0.94752 0.92159 0.93964 0.96230 0.92036 0.83266 0.72343 0.81213 0.83230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 11.14 113.37 1.26 2.06 16 2 O -0.31 -13.21 10.52 -95.35 -1.00 -14.22 16 3 C -0.03 -1.27 6.51 23.67 0.15 -1.12 16 4 C 0.05 2.30 6.44 24.77 0.16 2.46 16 5 C 0.10 5.38 5.43 29.10 0.16 5.54 16 6 C -0.54 -31.72 9.09 25.60 0.23 -31.49 16 7 H 0.05 2.99 7.74 -2.91 -0.02 2.97 16 8 C 0.01 0.81 5.46 84.66 0.46 1.27 16 9 N -0.92 -54.74 13.29 21.45 0.28 -54.45 16 10 Si 0.97 44.63 29.54 68.60 2.03 46.66 16 11 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 12 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 13 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 14 O -0.20 -9.33 10.59 -12.37 -0.13 -9.46 16 15 C 0.04 1.56 7.41 22.98 0.17 1.73 16 16 C -0.14 -4.28 10.00 22.45 0.22 -4.05 16 17 C 0.14 3.32 6.69 22.52 0.15 3.47 16 18 O -0.49 -8.70 13.49 -92.75 -1.25 -9.95 16 19 C -0.15 -3.26 9.91 22.14 0.22 -3.04 16 20 C -0.05 -1.49 10.04 22.18 0.22 -1.27 16 21 C -0.16 -6.12 6.40 -20.14 -0.13 -6.25 16 22 H 0.12 3.00 8.14 -2.38 -0.02 2.98 16 23 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 24 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 25 H 0.04 2.41 8.14 -2.38 -0.02 2.39 16 26 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.27 14.88 8.31 -92.70 -0.77 14.11 16 28 H 0.15 3.88 8.06 -2.91 -0.02 3.86 16 29 H 0.42 2.96 9.06 -74.06 -0.67 2.29 16 30 H 0.17 2.48 8.06 -2.91 -0.02 2.45 16 31 H 0.15 3.47 8.06 -2.91 -0.02 3.44 16 Total: -1.00 -71.42 283.27 3.70 -67.71 By element: Atomic # 1 Polarization: 3.90 SS G_CDS: 0.49 Total: 4.39 kcal Atomic # 6 Polarization: -33.97 SS G_CDS: 3.29 Total: -30.68 kcal Atomic # 7 Polarization: -54.74 SS G_CDS: 0.28 Total: -54.45 kcal Atomic # 8 Polarization: -31.24 SS G_CDS: -2.38 Total: -33.63 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -71.42 3.70 -67.71 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260991634.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.828 kcal (2) G-P(sol) polarization free energy of solvation -71.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds