Wall clock time and date at job start Mon Mar 30 2020 06:14:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35930 * 117.00281 * 2 1 4 4 C 1.39213 * 119.71742 * 359.97438 * 3 2 1 5 5 C 1.36664 * 120.36154 * 180.02562 * 4 3 2 6 6 C 1.39402 * 119.79574 * 359.95899 * 5 4 3 7 7 C 1.47041 * 134.23775 * 180.02562 * 6 5 4 8 8 O 1.36160 * 126.92844 * 0.02562 * 7 6 5 9 9 C 1.34249 * 106.14206 * 180.02562 * 7 6 5 10 10 C 1.50703 * 124.97141 * 180.02562 * 9 7 6 11 11 C 1.50693 * 109.47136 * 90.02224 * 10 9 7 12 12 H 1.07999 * 120.00188 * 0.02562 * 11 10 9 13 13 C 1.37882 * 119.99874 * 180.02562 * 11 10 9 14 14 N 1.31511 * 119.99904 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00125 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.47501 * 89.99710 * 15 13 11 17 17 H 1.48498 * 109.47118 * 209.99834 * 15 13 11 18 18 H 1.48505 * 109.47112 * 329.99803 * 15 13 11 19 19 O 1.34794 * 110.06257 * 0.02562 * 9 7 6 20 20 C 1.34813 * 110.90274 * 359.97438 * 19 9 7 21 21 C 1.38304 * 119.72298 * 179.97438 * 3 2 1 22 22 H 1.09001 * 109.46994 * 59.99736 * 1 2 3 23 23 H 1.08994 * 109.47353 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47324 * 300.00226 * 1 2 3 25 25 H 1.08006 * 119.82077 * 0.02562 * 4 3 2 26 26 H 1.08002 * 120.10058 * 180.02562 * 5 4 3 27 27 H 0.96700 * 114.00135 * 269.99802 * 8 7 6 28 28 H 1.08998 * 109.47010 * 210.02774 * 10 9 7 29 29 H 1.09004 * 109.46635 * 330.02494 * 10 9 7 30 30 H 0.97000 * 120.00164 * 179.97438 * 14 13 11 31 31 H 1.07996 * 120.11040 * 0.02562 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2822 2.3749 -0.0005 5 6 1.8890 3.5995 -0.0011 6 6 3.2805 3.6831 -0.0002 7 6 4.2413 4.7961 0.0000 8 8 3.9519 6.1266 -0.0001 9 6 5.4614 4.2360 0.0004 10 6 6.7616 4.9980 0.0014 11 6 7.1946 5.2509 1.4224 12 1 6.5891 4.8952 2.2429 13 6 8.3638 5.9366 1.6752 14 7 9.1014 6.3693 0.6760 15 14 8.9010 6.2495 3.4366 16 1 9.7517 5.1248 3.9021 17 1 9.6751 7.5152 3.5006 18 1 7.7031 6.3574 4.3077 19 8 5.3534 2.8924 -0.0001 20 6 4.0595 2.5139 -0.0003 21 6 3.4276 1.2767 0.0005 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 0.2041 2.3098 -0.0005 26 1 1.2922 4.4997 -0.0011 27 1 3.8686 6.5110 -0.8835 28 1 7.5251 4.4142 -0.5128 29 1 6.6252 5.9499 -0.5118 30 1 9.9238 6.8520 0.8538 31 1 4.0131 0.3693 0.0005 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260993401.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:37 Heat of formation + Delta-G solvation = -55.779715 kcal Electronic energy + Delta-G solvation = -17242.524350 eV Core-core repulsion = 14263.155273 eV Total energy + Delta-G solvation = -2979.369077 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.088 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.95719 -39.61155 -36.79512 -36.36786 -33.38720 -31.41859 -30.23398 -29.94911 -27.61219 -26.31547 -23.67675 -22.37836 -21.36020 -20.45223 -18.37789 -16.77653 -16.74455 -16.61988 -16.10950 -15.85888 -15.33724 -14.85739 -14.54490 -13.91930 -13.52241 -13.21011 -12.77579 -12.65247 -12.44459 -12.16521 -12.13207 -11.53511 -11.00201 -10.92432 -10.81328 -10.76202 -10.21336 -9.69090 -9.57834 -8.99584 -8.51061 -8.34621 -7.25610 -6.12914 -4.17534 1.24768 1.54861 2.81878 2.83245 3.29816 3.35439 3.41613 3.67266 3.87255 4.40162 4.58680 4.74403 4.92723 5.00055 5.00946 5.21446 5.24878 5.29854 5.49143 5.58289 5.89596 6.03691 6.22389 6.45453 6.47030 6.66202 6.80710 7.12123 7.27790 7.37503 7.80991 7.81897 8.09343 8.25074 8.83957 9.46249 10.96572 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.038798 B = 0.005044 C = 0.004848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.519232 B = 5550.365677 C = 5773.696617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.316 6.316 3 C 0.136 3.864 4 C -0.220 4.220 5 C -0.034 4.034 6 C -0.165 4.165 7 C -0.029 4.029 8 O -0.451 6.451 9 C 0.079 3.921 10 C 0.087 3.913 11 C -0.515 4.515 12 H 0.060 0.940 13 C 0.062 3.938 14 N -0.893 5.893 15 Si 0.903 3.097 16 H -0.278 1.278 17 H -0.284 1.284 18 H -0.272 1.272 19 O -0.179 6.179 20 C 0.085 3.915 21 C -0.143 4.143 22 H 0.054 0.946 23 H 0.098 0.902 24 H 0.055 0.945 25 H 0.130 0.870 26 H 0.127 0.873 27 H 0.371 0.629 28 H 0.042 0.958 29 H 0.059 0.941 30 H 0.265 0.735 31 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.632 -7.896 -3.705 17.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.230 6.230 3 C 0.091 3.909 4 C -0.239 4.239 5 C -0.052 4.052 6 C -0.167 4.167 7 C -0.075 4.075 8 O -0.257 6.257 9 C 0.031 3.969 10 C 0.050 3.950 11 C -0.553 4.553 12 H 0.079 0.921 13 C -0.140 4.140 14 N -0.532 5.532 15 Si 0.730 3.270 16 H -0.204 1.204 17 H -0.210 1.210 18 H -0.197 1.197 19 O -0.080 6.080 20 C 0.037 3.963 21 C -0.163 4.163 22 H 0.073 0.927 23 H 0.116 0.884 24 H 0.073 0.927 25 H 0.147 0.853 26 H 0.145 0.855 27 H 0.223 0.777 28 H 0.061 0.939 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -15.155 -8.232 -3.120 17.527 hybrid contribution -0.092 0.544 0.430 0.700 sum -15.248 -7.688 -2.690 17.287 Atomic orbital electron populations 1.23027 0.78467 1.03678 1.01379 1.86028 1.21206 1.26678 1.89110 1.18269 0.90899 0.84096 0.97630 1.20765 0.99789 0.91929 1.11380 1.19968 0.92080 0.97206 0.95920 1.20121 0.94356 0.93735 1.08481 1.18444 0.89396 0.83675 1.16004 1.84997 1.91894 1.16992 1.31773 1.23969 0.99080 0.78557 0.95319 1.18170 0.84299 0.93184 0.99338 1.20931 1.07072 1.36628 0.90673 0.92135 1.24955 0.96054 0.95183 0.97822 1.69931 1.14552 1.37813 1.30901 0.86409 0.78753 0.77722 0.84139 1.20418 1.20972 1.19650 1.84204 1.24256 1.23730 1.75842 1.18923 0.82617 0.93816 1.00928 1.18660 0.91074 0.94944 1.11579 0.92695 0.88388 0.92656 0.85256 0.85491 0.77671 0.93949 0.92330 0.92548 0.84442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.80 101.05 0.99 1.23 16 2 O -0.32 -4.01 10.49 -19.52 -0.20 -4.22 16 3 C 0.14 1.99 6.68 -39.20 -0.26 1.72 16 4 C -0.22 -2.95 8.96 -39.79 -0.36 -3.31 16 5 C -0.03 -0.52 10.04 -39.72 -0.40 -0.92 16 6 C -0.17 -3.15 6.40 -105.05 -0.67 -3.83 16 7 C -0.03 -0.61 7.49 -37.42 -0.28 -0.89 16 8 O -0.45 -8.82 13.61 -20.25 -0.28 -9.10 16 9 C 0.08 1.83 6.44 -35.71 -0.23 1.60 16 10 C 0.09 2.24 5.43 -29.04 -0.16 2.08 16 11 C -0.52 -14.68 9.09 -34.44 -0.31 -14.99 16 12 H 0.06 1.75 7.74 -52.49 -0.41 1.35 16 13 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 14 N -0.89 -25.94 13.29 55.43 0.74 -25.21 16 15 Si 0.90 21.72 29.54 -169.99 -5.02 16.70 16 16 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 17 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 18 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 19 O -0.18 -3.98 10.59 2.93 0.03 -3.95 16 20 C 0.09 1.67 7.41 -38.48 -0.29 1.38 16 21 C -0.14 -2.38 10.00 -39.31 -0.39 -2.77 16 22 H 0.05 0.38 7.64 -51.93 -0.40 -0.02 16 23 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 24 H 0.05 0.40 7.64 -51.93 -0.40 0.00 16 25 H 0.13 1.30 6.25 -52.48 -0.33 0.97 16 26 H 0.13 1.67 8.06 -52.49 -0.42 1.25 16 27 H 0.37 5.24 9.07 45.56 0.41 5.65 16 28 H 0.04 1.13 8.14 -51.93 -0.42 0.70 16 29 H 0.06 1.53 8.14 -51.93 -0.42 1.10 16 30 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 31 H 0.14 2.05 8.06 -52.49 -0.42 1.63 16 LS Contribution 279.23 15.07 4.21 4.21 Total: -1.00 -32.17 279.23 -5.34 -37.52 By element: Atomic # 1 Polarization: 3.44 SS G_CDS: -2.36 Total: 1.08 kcal Atomic # 6 Polarization: -14.58 SS G_CDS: -2.46 Total: -17.03 kcal Atomic # 7 Polarization: -25.94 SS G_CDS: 0.74 Total: -25.21 kcal Atomic # 8 Polarization: -16.82 SS G_CDS: -0.45 Total: -17.27 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -32.17 -5.34 -37.52 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260993401.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.261 kcal (2) G-P(sol) polarization free energy of solvation -32.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds