Wall clock time and date at job start Mon Mar 30 2020 06:14:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35930 * 117.00281 * 2 1 4 4 C 1.39213 * 119.71742 * 359.97438 * 3 2 1 5 5 C 1.36664 * 120.36154 * 180.02562 * 4 3 2 6 6 C 1.39402 * 119.79574 * 359.95899 * 5 4 3 7 7 C 1.47041 * 134.23775 * 180.02562 * 6 5 4 8 8 O 1.36160 * 126.92844 * 0.02562 * 7 6 5 9 9 C 1.34249 * 106.14206 * 180.02562 * 7 6 5 10 10 C 1.50703 * 124.97141 * 180.02562 * 9 7 6 11 11 C 1.50693 * 109.47136 * 90.02224 * 10 9 7 12 12 H 1.07999 * 120.00188 * 0.02562 * 11 10 9 13 13 C 1.37882 * 119.99874 * 180.02562 * 11 10 9 14 14 N 1.31511 * 119.99904 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00125 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.47501 * 89.99710 * 15 13 11 17 17 H 1.48498 * 109.47118 * 209.99834 * 15 13 11 18 18 H 1.48505 * 109.47112 * 329.99803 * 15 13 11 19 19 O 1.34794 * 110.06257 * 0.02562 * 9 7 6 20 20 C 1.34813 * 110.90274 * 359.97438 * 19 9 7 21 21 C 1.38304 * 119.72298 * 179.97438 * 3 2 1 22 22 H 1.09001 * 109.46994 * 59.99736 * 1 2 3 23 23 H 1.08994 * 109.47353 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47324 * 300.00226 * 1 2 3 25 25 H 1.08006 * 119.82077 * 0.02562 * 4 3 2 26 26 H 1.08002 * 120.10058 * 180.02562 * 5 4 3 27 27 H 0.96700 * 114.00135 * 269.99802 * 8 7 6 28 28 H 1.08998 * 109.47010 * 210.02774 * 10 9 7 29 29 H 1.09004 * 109.46635 * 330.02494 * 10 9 7 30 30 H 0.97000 * 120.00164 * 179.97438 * 14 13 11 31 31 H 1.07996 * 120.11040 * 0.02562 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2822 2.3749 -0.0005 5 6 1.8890 3.5995 -0.0011 6 6 3.2805 3.6831 -0.0002 7 6 4.2413 4.7961 0.0000 8 8 3.9519 6.1266 -0.0001 9 6 5.4614 4.2360 0.0004 10 6 6.7616 4.9980 0.0014 11 6 7.1946 5.2509 1.4224 12 1 6.5891 4.8952 2.2429 13 6 8.3638 5.9366 1.6752 14 7 9.1014 6.3693 0.6760 15 14 8.9010 6.2495 3.4366 16 1 9.7517 5.1248 3.9021 17 1 9.6751 7.5152 3.5006 18 1 7.7031 6.3574 4.3077 19 8 5.3534 2.8924 -0.0001 20 6 4.0595 2.5139 -0.0003 21 6 3.4276 1.2767 0.0005 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 0.2041 2.3098 -0.0005 26 1 1.2922 4.4997 -0.0011 27 1 3.8686 6.5110 -0.8835 28 1 7.5251 4.4142 -0.5128 29 1 6.6252 5.9499 -0.5118 30 1 9.9238 6.8520 0.8538 31 1 4.0131 0.3693 0.0005 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260993401.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:36 Heat of formation + Delta-G solvation = -78.657605 kcal Electronic energy + Delta-G solvation = -17243.516410 eV Core-core repulsion = 14263.155273 eV Total energy + Delta-G solvation = -2980.361137 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.088 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.45326 -40.69524 -38.36236 -37.57363 -35.46985 -32.95377 -31.81036 -31.34204 -28.76737 -27.65689 -25.48856 -23.79468 -22.75659 -21.98669 -19.65764 -18.74701 -18.17926 -17.91001 -17.53044 -17.09592 -16.56929 -16.51661 -16.08624 -15.31405 -14.83652 -14.59723 -14.41066 -14.25672 -13.93430 -13.53999 -13.31491 -13.02230 -12.85064 -12.67580 -12.19373 -11.99473 -11.88783 -11.71218 -11.25373 -10.66935 -10.42522 -9.64361 -8.74848 -8.25536 -6.41795 -0.06635 0.26538 1.25009 1.39600 1.39967 1.50692 1.54486 2.37718 2.51468 2.60958 3.03295 3.15050 3.49244 3.84519 3.98185 4.10517 4.27318 4.44632 4.44826 4.47136 4.66348 4.81857 4.96852 5.07870 5.09735 5.20524 5.26888 5.30841 5.52015 5.61941 5.98924 6.16692 6.36282 6.63896 6.85380 7.26122 8.81359 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.038798 B = 0.005044 C = 0.004848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.519232 B = 5550.365677 C = 5773.696617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.326 6.326 3 C 0.156 3.844 4 C -0.204 4.204 5 C -0.028 4.028 6 C -0.192 4.192 7 C -0.010 4.010 8 O -0.464 6.464 9 C 0.029 3.971 10 C 0.098 3.902 11 C -0.539 4.539 12 H 0.047 0.953 13 C 0.014 3.986 14 N -0.922 5.922 15 Si 0.969 3.031 16 H -0.270 1.270 17 H -0.271 1.271 18 H -0.271 1.271 19 O -0.202 6.202 20 C 0.065 3.935 21 C -0.165 4.165 22 H 0.072 0.928 23 H 0.122 0.878 24 H 0.069 0.931 25 H 0.175 0.825 26 H 0.155 0.845 27 H 0.396 0.604 28 H 0.019 0.981 29 H 0.047 0.953 30 H 0.271 0.729 31 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.702 -8.589 -3.002 20.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.240 6.240 3 C 0.110 3.890 4 C -0.222 4.222 5 C -0.045 4.045 6 C -0.193 4.193 7 C -0.056 4.056 8 O -0.273 6.273 9 C -0.018 4.018 10 C 0.061 3.939 11 C -0.577 4.577 12 H 0.065 0.935 13 C -0.185 4.185 14 N -0.561 5.561 15 Si 0.793 3.207 16 H -0.195 1.195 17 H -0.196 1.196 18 H -0.195 1.195 19 O -0.104 6.104 20 C 0.018 3.982 21 C -0.184 4.184 22 H 0.090 0.910 23 H 0.141 0.859 24 H 0.088 0.912 25 H 0.193 0.807 26 H 0.172 0.828 27 H 0.252 0.748 28 H 0.037 0.963 29 H 0.065 0.935 30 H 0.080 0.920 31 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -18.247 -8.930 -2.443 20.461 hybrid contribution 0.598 0.610 0.150 0.867 sum -17.650 -8.320 -2.293 19.647 Atomic orbital electron populations 1.23477 0.75557 1.06022 1.02859 1.86052 1.24106 1.25551 1.88279 1.18391 0.90280 0.85488 0.94890 1.21215 1.01905 0.90387 1.08699 1.20337 0.90445 0.99273 0.94488 1.20223 0.95882 0.92208 1.11018 1.18635 0.89489 0.84463 1.13021 1.84883 1.91786 1.16551 1.34091 1.23384 0.98708 0.79393 1.00363 1.17759 0.85508 0.92819 0.97827 1.21190 1.07646 1.37232 0.91618 0.93474 1.25828 0.95841 0.94609 1.02249 1.70025 1.14958 1.38135 1.32999 0.85387 0.78362 0.78203 0.78767 1.19483 1.19598 1.19535 1.84086 1.26280 1.23186 1.76893 1.19386 0.81623 0.95315 1.01898 1.18880 0.92470 0.94182 1.12909 0.90966 0.85943 0.91224 0.80739 0.82765 0.74761 0.96316 0.93508 0.92041 0.83783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.16 9.80 113.37 1.11 1.27 16 2 O -0.33 -7.07 10.49 -92.76 -0.97 -8.04 16 3 C 0.16 4.08 6.68 22.52 0.15 4.23 16 4 C -0.20 -4.58 8.96 22.14 0.20 -4.38 16 5 C -0.03 -0.76 10.04 22.18 0.22 -0.54 16 6 C -0.19 -7.23 6.40 -20.14 -0.13 -7.36 16 7 C -0.01 -0.41 7.49 23.67 0.18 -0.24 16 8 O -0.46 -18.20 13.61 -95.37 -1.30 -19.50 16 9 C 0.03 1.44 6.44 24.78 0.16 1.60 16 10 C 0.10 5.40 5.43 29.10 0.16 5.56 16 11 C -0.54 -32.15 9.09 25.60 0.23 -31.92 16 12 H 0.05 2.86 7.74 -2.91 -0.02 2.83 16 13 C 0.01 0.82 5.46 84.66 0.46 1.28 16 14 N -0.92 -54.99 13.29 21.45 0.28 -54.70 16 15 Si 0.97 45.15 29.54 68.60 2.03 47.17 16 16 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 17 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 18 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 19 O -0.20 -9.55 10.59 -12.42 -0.13 -9.68 16 20 C 0.07 2.60 7.41 22.98 0.17 2.77 16 21 C -0.17 -5.38 10.00 22.45 0.22 -5.15 16 22 H 0.07 0.59 7.64 -2.39 -0.02 0.57 16 23 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 24 H 0.07 0.61 7.64 -2.39 -0.02 0.60 16 25 H 0.18 2.35 6.25 -2.91 -0.02 2.33 16 26 H 0.15 3.40 8.06 -2.91 -0.02 3.38 16 27 H 0.40 11.07 9.07 -74.06 -0.67 10.39 16 28 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.05 2.61 8.14 -2.39 -0.02 2.59 16 30 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 31 H 0.14 4.32 8.06 -2.91 -0.02 4.29 16 Total: -1.00 -72.56 279.23 3.54 -69.02 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: 0.50 Total: 8.62 kcal Atomic # 6 Polarization: -36.02 SS G_CDS: 3.14 Total: -32.88 kcal Atomic # 7 Polarization: -54.99 SS G_CDS: 0.28 Total: -54.70 kcal Atomic # 8 Polarization: -34.83 SS G_CDS: -2.40 Total: -37.23 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.17 kcal Total: -72.56 3.54 -69.02 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260993401.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.641 kcal (2) G-P(sol) polarization free energy of solvation -72.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds