Wall clock time and date at job start Mon Mar 30 2020 06:14:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35623 * 116.99629 * 2 1 4 4 C 1.39742 * 126.78441 * 89.97234 * 3 2 1 5 5 C 1.39448 * 125.60514 * 0.02562 * 4 3 2 6 6 H 1.08003 * 120.00439 * 6.34267 * 5 4 3 7 7 C 1.40084 * 120.00107 * 186.34060 * 5 4 3 8 8 N 1.30907 * 119.99830 * 6.54143 * 7 5 4 9 9 Si 1.86799 * 120.00313 * 186.26106 * 7 5 4 10 10 H 1.48496 * 109.47178 * 265.29014 * 9 7 5 11 11 H 1.48496 * 109.46790 * 25.29484 * 9 7 5 12 12 H 1.48502 * 109.46777 * 145.29259 * 9 7 5 13 13 O 1.35244 * 108.78194 * 180.28360 * 4 3 2 14 14 C 1.35123 * 110.05141 * 359.56079 * 13 4 3 15 15 C 1.38572 * 132.57661 * 180.12596 * 14 13 4 16 16 C 1.38664 * 119.89921 * 180.33893 * 15 14 13 17 17 O 1.35792 * 119.71396 * 179.97438 * 16 15 14 18 18 C 1.42901 * 116.99668 * 180.02562 * 17 16 15 19 19 C 1.39349 * 120.56837 * 359.97438 * 16 15 14 20 20 C 1.36469 * 120.37496 * 0.02562 * 19 16 15 21 21 C 1.40173 * 119.83404 * 359.96738 * 20 19 16 22 22 H 1.08991 * 109.47302 * 300.00014 * 1 2 3 23 23 H 1.08996 * 109.47443 * 60.00875 * 1 2 3 24 24 H 1.09009 * 109.46555 * 180.02562 * 1 2 3 25 25 H 0.96994 * 120.00075 * 179.72084 * 8 7 5 26 26 H 1.07999 * 120.05470 * 0.31406 * 15 14 13 27 27 H 1.09000 * 109.47079 * 299.99416 * 18 17 16 28 28 H 1.08995 * 109.47415 * 59.99583 * 18 17 16 29 29 H 1.09004 * 109.47305 * 180.02562 * 18 17 16 30 30 H 1.07999 * 119.80851 * 180.02562 * 19 16 15 31 31 H 1.07994 * 120.07746 * 180.02562 * 20 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2084 0.0000 4 6 2.4240 1.9543 1.1192 5 6 2.2324 1.5784 2.4483 6 1 1.8484 0.5964 2.6819 7 6 2.5380 2.4746 3.4807 8 7 2.8808 3.7061 3.1983 9 14 2.4487 1.9148 5.2606 10 1 1.1191 2.2629 5.8229 11 1 2.6450 0.4444 5.3273 12 1 3.5112 2.5922 6.0463 13 8 3.0024 3.1032 0.7012 14 6 3.0299 3.1434 -0.6491 15 6 3.5079 4.0820 -1.5496 16 6 3.3922 3.8540 -2.9124 17 8 3.8614 4.7765 -3.7915 18 6 3.7116 4.4826 -5.1819 19 6 2.7985 2.6863 -3.3877 20 6 2.3218 1.7504 -2.5163 21 6 2.4305 1.9642 -1.1352 22 1 -0.3633 0.5138 0.8899 23 1 -0.3634 0.5137 -0.8900 24 1 -0.3633 -1.0278 0.0005 25 1 3.0884 4.3278 3.9133 26 1 3.9696 4.9899 -1.1905 27 1 4.2401 3.5588 -5.4170 28 1 2.6537 4.3659 -5.4167 29 1 4.1274 5.2989 -5.7727 30 1 2.7151 2.5211 -4.4517 31 1 1.8630 0.8470 -2.8899 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261013552.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:39 Heat of formation + Delta-G solvation = -63.446064 kcal Electronic energy + Delta-G solvation = -17684.096356 eV Core-core repulsion = 14704.394841 eV Total energy + Delta-G solvation = -2979.701515 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.088 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.85148 -38.84335 -36.65125 -35.60155 -33.89151 -30.73214 -29.40185 -28.91588 -26.93023 -26.15400 -24.67955 -21.92284 -21.01775 -19.80326 -18.16134 -17.36284 -16.08548 -15.65596 -15.29834 -15.15695 -15.04373 -14.73564 -13.86552 -13.76195 -13.66829 -12.91479 -12.74492 -12.50051 -12.05477 -11.74505 -11.52341 -11.51347 -11.29426 -10.97915 -10.72804 -10.51516 -10.28339 -9.97756 -9.74446 -8.57625 -8.43575 -7.61192 -7.22488 -6.96517 -4.64544 2.03742 2.39783 2.77856 2.88133 2.95168 3.46955 3.62131 3.66276 4.55933 4.67716 4.74752 5.32068 5.35734 5.42457 5.59262 5.63301 5.72060 6.12193 6.15175 6.21110 6.32739 6.40269 6.47333 6.66232 6.78112 6.87429 7.06893 7.29663 7.45373 7.46240 7.76808 7.99257 8.13176 8.26147 8.78600 9.07364 9.74193 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.029209 B = 0.006806 C = 0.005616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.367725 B = 4112.792615 C = 4984.511564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.284 6.284 3 C -0.226 4.226 4 C 0.233 3.767 5 C -0.407 4.407 6 H 0.116 0.884 7 C 0.063 3.937 8 N -0.751 5.751 9 Si 0.931 3.069 10 H -0.264 1.264 11 H -0.253 1.253 12 H -0.270 1.270 13 O -0.163 6.163 14 C 0.025 3.975 15 C -0.120 4.120 16 C 0.068 3.932 17 O -0.324 6.324 18 C 0.035 3.965 19 C -0.198 4.198 20 C -0.102 4.102 21 C -0.079 4.079 22 H 0.034 0.966 23 H 0.025 0.975 24 H 0.068 0.932 25 H 0.293 0.707 26 H 0.122 0.878 27 H 0.048 0.952 28 H 0.048 0.952 29 H 0.089 0.911 30 H 0.114 0.886 31 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.028 -0.054 -5.240 5.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.199 6.199 3 C -0.273 4.273 4 C 0.182 3.818 5 C -0.434 4.434 6 H 0.134 0.866 7 C -0.162 4.162 8 N -0.374 5.374 9 Si 0.753 3.247 10 H -0.188 1.188 11 H -0.177 1.177 12 H -0.195 1.195 13 O -0.064 6.064 14 C -0.022 4.022 15 C -0.139 4.139 16 C 0.025 3.975 17 O -0.239 6.239 18 C -0.060 4.060 19 C -0.217 4.217 20 C -0.120 4.120 21 C -0.081 4.081 22 H 0.053 0.947 23 H 0.044 0.956 24 H 0.087 0.913 25 H 0.104 0.896 26 H 0.140 0.860 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.108 0.892 30 H 0.132 0.868 31 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -0.676 0.398 -4.961 5.022 hybrid contribution -0.472 -0.160 0.398 0.638 sum -1.149 0.238 -4.563 4.711 Atomic orbital electron populations 1.22982 0.85408 1.00073 0.99239 1.86111 1.16307 1.23955 1.93511 1.17794 1.23277 0.96841 0.89394 1.19654 0.88045 0.80630 0.93482 1.19029 1.35840 1.01699 0.86806 0.86601 1.26376 0.92221 0.94126 1.03506 1.69806 1.26866 1.03881 1.36844 0.85894 0.79273 0.80684 0.78859 1.18840 1.17668 1.19459 1.84698 1.67109 1.37685 1.16918 1.18939 1.04090 0.95808 0.83380 1.18529 1.07339 0.99742 0.88290 1.18055 1.01193 0.89893 0.88382 1.85907 1.78397 1.44003 1.15601 1.22850 1.01009 1.01628 0.80542 1.20498 1.06581 0.95673 0.98951 1.19804 1.02405 0.98776 0.91043 1.18827 1.00624 0.94905 0.93704 0.94732 0.95649 0.91350 0.89594 0.86002 0.93329 0.93357 0.89240 0.86815 0.87173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 11.13 101.05 1.12 1.49 16 2 O -0.28 -6.97 10.52 -18.57 -0.20 -7.17 16 3 C -0.23 -5.98 6.44 -37.69 -0.24 -6.22 16 4 C 0.23 6.38 6.74 -38.57 -0.26 6.12 16 5 C -0.41 -10.42 9.25 -38.44 -0.36 -10.77 16 6 H 0.12 2.81 7.86 -52.48 -0.41 2.40 16 7 C 0.06 1.48 5.49 -17.25 -0.09 1.38 16 8 N -0.75 -18.69 12.03 55.56 0.67 -18.02 16 9 Si 0.93 17.19 29.57 -169.99 -5.03 12.17 16 10 H -0.26 -4.75 7.11 56.52 0.40 -4.34 16 11 H -0.25 -4.61 7.11 56.52 0.40 -4.21 16 12 H -0.27 -4.86 7.11 56.52 0.40 -4.46 16 13 O -0.16 -4.53 8.97 0.73 0.01 -4.53 16 14 C 0.03 0.64 7.35 -38.44 -0.28 0.36 16 15 C -0.12 -2.72 9.99 -39.30 -0.39 -3.12 16 16 C 0.07 1.40 6.69 -39.01 -0.26 1.14 16 17 O -0.32 -5.83 10.48 -19.09 -0.20 -6.03 16 18 C 0.04 0.45 9.80 101.05 0.99 1.44 16 19 C -0.20 -3.87 8.96 -39.81 -0.36 -4.22 16 20 C -0.10 -2.22 10.06 -39.49 -0.40 -2.62 16 21 C -0.08 -2.00 6.18 -106.82 -0.66 -2.66 16 22 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 24 H 0.07 1.13 8.14 -51.92 -0.42 0.70 16 25 H 0.29 6.45 8.30 -40.82 -0.34 6.11 16 26 H 0.12 2.59 8.06 -52.49 -0.42 2.17 16 27 H 0.05 0.57 7.64 -51.93 -0.40 0.18 16 28 H 0.05 0.57 7.64 -51.93 -0.40 0.17 16 29 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.11 1.81 6.25 -52.49 -0.33 1.48 16 31 H 0.11 2.20 8.06 -52.49 -0.42 1.78 16 LS Contribution 277.34 15.07 4.18 4.18 Total: -1.00 -29.33 277.34 -4.96 -34.29 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -3.20 Total: 2.77 kcal Atomic # 6 Polarization: -16.47 SS G_CDS: -1.19 Total: -17.66 kcal Atomic # 7 Polarization: -18.69 SS G_CDS: 0.67 Total: -18.02 kcal Atomic # 8 Polarization: -17.34 SS G_CDS: -0.39 Total: -17.73 kcal Atomic # 14 Polarization: 17.19 SS G_CDS: -5.03 Total: 12.17 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -29.33 -4.96 -34.29 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261013552.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.152 kcal (2) G-P(sol) polarization free energy of solvation -29.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds