Wall clock time and date at job start Mon Mar 30 2020 06:14:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35623 * 116.99629 * 2 1 4 4 C 1.39742 * 126.78441 * 89.97234 * 3 2 1 5 5 C 1.39448 * 125.60514 * 0.02562 * 4 3 2 6 6 H 1.08003 * 120.00439 * 6.34267 * 5 4 3 7 7 C 1.40084 * 120.00107 * 186.34060 * 5 4 3 8 8 N 1.30907 * 119.99830 * 6.54143 * 7 5 4 9 9 Si 1.86799 * 120.00313 * 186.26106 * 7 5 4 10 10 H 1.48496 * 109.47178 * 265.29014 * 9 7 5 11 11 H 1.48496 * 109.46790 * 25.29484 * 9 7 5 12 12 H 1.48502 * 109.46777 * 145.29259 * 9 7 5 13 13 O 1.35244 * 108.78194 * 180.28360 * 4 3 2 14 14 C 1.35123 * 110.05141 * 359.56079 * 13 4 3 15 15 C 1.38572 * 132.57661 * 180.12596 * 14 13 4 16 16 C 1.38664 * 119.89921 * 180.33893 * 15 14 13 17 17 O 1.35792 * 119.71396 * 179.97438 * 16 15 14 18 18 C 1.42901 * 116.99668 * 180.02562 * 17 16 15 19 19 C 1.39349 * 120.56837 * 359.97438 * 16 15 14 20 20 C 1.36469 * 120.37496 * 0.02562 * 19 16 15 21 21 C 1.40173 * 119.83404 * 359.96738 * 20 19 16 22 22 H 1.08991 * 109.47302 * 300.00014 * 1 2 3 23 23 H 1.08996 * 109.47443 * 60.00875 * 1 2 3 24 24 H 1.09009 * 109.46555 * 180.02562 * 1 2 3 25 25 H 0.96994 * 120.00075 * 179.72084 * 8 7 5 26 26 H 1.07999 * 120.05470 * 0.31406 * 15 14 13 27 27 H 1.09000 * 109.47079 * 299.99416 * 18 17 16 28 28 H 1.08995 * 109.47415 * 59.99583 * 18 17 16 29 29 H 1.09004 * 109.47305 * 180.02562 * 18 17 16 30 30 H 1.07999 * 119.80851 * 180.02562 * 19 16 15 31 31 H 1.07994 * 120.07746 * 180.02562 * 20 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2084 0.0000 4 6 2.4240 1.9543 1.1192 5 6 2.2324 1.5784 2.4483 6 1 1.8484 0.5964 2.6819 7 6 2.5380 2.4746 3.4807 8 7 2.8808 3.7061 3.1983 9 14 2.4487 1.9148 5.2606 10 1 1.1191 2.2629 5.8229 11 1 2.6450 0.4444 5.3273 12 1 3.5112 2.5922 6.0463 13 8 3.0024 3.1032 0.7012 14 6 3.0299 3.1434 -0.6491 15 6 3.5079 4.0820 -1.5496 16 6 3.3922 3.8540 -2.9124 17 8 3.8614 4.7765 -3.7915 18 6 3.7116 4.4826 -5.1819 19 6 2.7985 2.6863 -3.3877 20 6 2.3218 1.7504 -2.5163 21 6 2.4305 1.9642 -1.1352 22 1 -0.3633 0.5138 0.8899 23 1 -0.3634 0.5137 -0.8900 24 1 -0.3633 -1.0278 0.0005 25 1 3.0884 4.3278 3.9133 26 1 3.9696 4.9899 -1.1905 27 1 4.2401 3.5588 -5.4170 28 1 2.6537 4.3659 -5.4167 29 1 4.1274 5.2989 -5.7727 30 1 2.7151 2.5211 -4.4517 31 1 1.8630 0.8470 -2.8899 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261013552.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:38 Heat of formation + Delta-G solvation = -82.183161 kcal Electronic energy + Delta-G solvation = -17684.908857 eV Core-core repulsion = 14704.394841 eV Total energy + Delta-G solvation = -2980.514016 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.088 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.71396 -40.36869 -38.48994 -37.26045 -35.69578 -32.50499 -31.15021 -30.69558 -28.27181 -27.73085 -26.41799 -23.68276 -22.73991 -21.66837 -19.92923 -19.03880 -17.72121 -17.44071 -16.94193 -16.72865 -16.62002 -16.35011 -15.60070 -15.45011 -15.38373 -14.63195 -14.38051 -13.98108 -13.70097 -13.24951 -13.12665 -12.94078 -12.91691 -12.59131 -12.37512 -12.01613 -11.78363 -11.59567 -11.43538 -10.40403 -10.23207 -9.37597 -8.98843 -8.79210 -6.53208 0.27772 0.65232 1.21648 1.35226 1.54775 1.76452 2.07255 2.12760 2.86911 2.90472 2.97453 3.53944 3.89785 4.11194 4.33012 4.49130 4.50296 4.52086 4.57670 4.68951 4.76910 4.78510 4.80270 4.87860 5.02275 5.11957 5.36373 5.60495 5.65424 5.66541 5.94747 6.16063 6.37266 6.61803 6.87821 7.21711 8.02355 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.029209 B = 0.006806 C = 0.005616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.367725 B = 4112.792615 C = 4984.511564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.301 6.301 3 C -0.245 4.245 4 C 0.196 3.804 5 C -0.436 4.436 6 H 0.119 0.881 7 C 0.022 3.978 8 N -0.793 5.793 9 Si 1.011 2.989 10 H -0.252 1.252 11 H -0.249 1.249 12 H -0.260 1.260 13 O -0.188 6.188 14 C -0.009 4.009 15 C -0.142 4.142 16 C 0.090 3.910 17 O -0.335 6.335 18 C 0.020 3.980 19 C -0.185 4.185 20 C -0.099 4.099 21 C -0.110 4.110 22 H 0.025 0.975 23 H 0.029 0.971 24 H 0.108 0.892 25 H 0.303 0.697 26 H 0.125 0.875 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.122 0.878 30 H 0.161 0.839 31 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.330 -0.438 -6.761 6.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.217 6.217 3 C -0.292 4.292 4 C 0.145 3.855 5 C -0.463 4.463 6 H 0.137 0.863 7 C -0.199 4.199 8 N -0.416 5.416 9 Si 0.827 3.173 10 H -0.176 1.176 11 H -0.172 1.172 12 H -0.184 1.184 13 O -0.090 6.090 14 C -0.056 4.056 15 C -0.161 4.161 16 C 0.045 3.955 17 O -0.250 6.250 18 C -0.074 4.074 19 C -0.204 4.204 20 C -0.117 4.117 21 C -0.111 4.111 22 H 0.044 0.956 23 H 0.048 0.952 24 H 0.126 0.874 25 H 0.114 0.886 26 H 0.143 0.857 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.140 0.860 30 H 0.179 0.821 31 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -0.980 0.023 -6.528 6.601 hybrid contribution -0.365 0.029 0.533 0.646 sum -1.344 0.052 -5.995 6.144 Atomic orbital electron populations 1.23137 0.82922 1.02561 0.99007 1.85991 1.18631 1.23474 1.93611 1.18026 1.24159 0.97171 0.89840 1.20153 0.89426 0.81203 0.94743 1.19340 1.37246 1.02463 0.87233 0.86333 1.27421 0.90831 0.93613 1.07991 1.69863 1.27654 1.05259 1.38849 0.84757 0.79876 0.80260 0.72361 1.17627 1.17168 1.18370 1.84610 1.67757 1.38267 1.18337 1.19428 1.05815 0.97323 0.83019 1.18765 1.08260 0.99709 0.89414 1.18155 0.99055 0.90240 0.88035 1.85926 1.77722 1.43395 1.17934 1.23325 1.02609 1.03921 0.77521 1.20923 1.04366 0.94115 1.00956 1.20144 1.01816 0.99970 0.89807 1.19100 1.01951 0.94920 0.95132 0.95644 0.95218 0.87414 0.88590 0.85717 0.91877 0.91879 0.86018 0.82149 0.85179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.74 11.13 113.37 1.26 2.00 16 2 O -0.30 -15.09 10.52 -89.35 -0.94 -16.03 16 3 C -0.25 -13.49 6.44 23.50 0.15 -13.34 16 4 C 0.20 11.33 6.74 22.93 0.15 11.49 16 5 C -0.44 -23.44 9.25 23.01 0.21 -23.23 16 6 H 0.12 6.02 7.86 -2.91 -0.02 6.00 16 7 C 0.02 1.07 5.49 85.28 0.47 1.54 16 8 N -0.79 -41.13 12.03 21.86 0.26 -40.86 16 9 Si 1.01 35.48 29.57 68.60 2.03 37.51 16 10 H -0.25 -8.33 7.11 99.48 0.71 -7.62 16 11 H -0.25 -8.43 7.11 99.48 0.71 -7.72 16 12 H -0.26 -8.60 7.11 99.48 0.71 -7.89 16 13 O -0.19 -11.11 8.97 -20.29 -0.18 -11.29 16 14 C -0.01 -0.49 7.35 23.01 0.17 -0.32 16 15 C -0.14 -6.58 9.99 22.45 0.22 -6.36 16 16 C 0.09 3.52 6.69 22.64 0.15 3.67 16 17 O -0.33 -11.04 10.48 -91.22 -0.96 -12.00 16 18 C 0.02 0.42 9.80 113.37 1.11 1.53 16 19 C -0.19 -6.65 8.96 22.12 0.20 -6.45 16 20 C -0.10 -4.18 10.06 22.33 0.22 -3.95 16 21 C -0.11 -5.67 6.18 -21.29 -0.13 -5.80 16 22 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 23 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 24 H 0.11 3.36 8.14 -2.38 -0.02 3.34 16 25 H 0.30 13.78 8.30 -92.71 -0.77 13.01 16 26 H 0.12 5.50 8.06 -2.91 -0.02 5.47 16 27 H 0.06 1.17 7.64 -2.39 -0.02 1.15 16 28 H 0.06 1.16 7.64 -2.39 -0.02 1.14 16 29 H 0.12 1.79 8.14 -2.38 -0.02 1.77 16 30 H 0.16 4.23 6.25 -2.91 -0.02 4.22 16 31 H 0.13 4.89 8.06 -2.91 -0.02 4.87 16 Total: -1.00 -67.60 277.34 5.56 -62.04 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: 1.15 Total: 19.84 kcal Atomic # 6 Polarization: -43.41 SS G_CDS: 4.20 Total: -39.21 kcal Atomic # 7 Polarization: -41.13 SS G_CDS: 0.26 Total: -40.86 kcal Atomic # 8 Polarization: -37.24 SS G_CDS: -2.08 Total: -39.32 kcal Atomic # 14 Polarization: 35.48 SS G_CDS: 2.03 Total: 37.51 kcal Total: -67.60 5.56 -62.04 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261013552.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.143 kcal (2) G-P(sol) polarization free energy of solvation -67.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds