Wall clock time and date at job start Mon Mar 30 2020 05:47:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30676 * 1 3 3 Si 1.86805 * 119.99689 * 2 1 4 4 H 1.48501 * 109.46956 * 270.00236 * 3 2 1 5 5 H 1.48507 * 109.46839 * 29.99767 * 3 2 1 6 6 H 1.48494 * 109.47035 * 149.99759 * 3 2 1 7 7 C 1.40106 * 120.00513 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00363 * 179.97438 * 7 2 1 9 9 C 1.41555 * 120.00056 * 0.02562 * 7 2 1 10 10 N 1.33618 * 120.28300 * 0.02562 * 9 7 2 11 11 C 1.31370 * 120.17556 * 179.97438 * 10 9 7 12 12 C 1.50704 * 119.12945 * 179.97438 * 11 10 9 13 13 C 1.53001 * 117.49677 * 8.62392 * 12 11 10 14 14 C 1.53000 * 60.00028 * 252.50996 * 13 12 11 15 15 N 1.32506 * 121.85411 * 0.06339 * 11 10 9 16 16 C 1.33779 * 121.93367 * 359.84413 * 15 11 10 17 17 C 1.37638 * 118.46958 * 0.16807 * 16 15 11 18 18 C 1.52051 * 115.57173 * 179.97438 * 17 16 15 19 19 S 1.83286 * 103.59974 * 17.48993 * 18 17 16 20 20 C 1.52165 * 125.80072 * 180.18855 * 16 15 11 21 21 H 0.96997 * 120.00193 * 359.97438 * 1 2 3 22 22 H 1.09002 * 115.55235 * 154.32577 * 12 11 10 23 23 H 1.09000 * 117.49965 * 359.97438 * 13 12 11 24 24 H 1.08994 * 117.50313 * 145.02042 * 13 12 11 25 25 H 1.09001 * 117.49914 * 252.51261 * 14 13 12 26 26 H 1.08999 * 117.51834 * 107.47962 * 14 13 12 27 27 H 1.09002 * 110.62553 * 258.91640 * 18 17 16 28 28 H 1.09004 * 110.62561 * 136.06087 * 18 17 16 29 29 H 1.08999 * 110.62232 * 44.09437 * 20 16 15 30 30 H 1.08999 * 110.61920 * 281.09872 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.4881 2.0465 -1.4001 5 1 1.4380 2.6527 0.7000 6 1 3.5382 1.4403 0.7001 7 6 2.0074 -1.2133 0.0005 8 1 3.0873 -1.2133 0.0001 9 6 1.2998 -2.4393 0.0005 10 7 -0.0364 -2.4460 -0.0005 11 6 -0.6910 -3.5850 -0.0010 12 6 -2.1979 -3.5651 -0.0016 13 6 -2.8864 -2.2140 -0.2050 14 6 -2.8958 -2.8774 1.1736 15 7 -0.0637 -4.7521 0.0007 16 6 1.2714 -4.8379 0.0000 17 6 2.0037 -3.6725 0.0009 18 6 3.5142 -3.8465 0.0006 19 16 3.7478 -5.5833 -0.5363 20 6 2.0806 -6.1265 -0.0022 21 1 -0.4850 0.8400 0.0004 22 1 -2.6796 -4.4450 -0.4280 23 1 -2.2495 -1.3395 -0.3381 24 1 -3.8212 -2.2047 -0.7655 25 1 -3.8367 -3.3048 1.5201 26 1 -2.2650 -2.4398 1.9474 27 1 3.9182 -3.6965 1.0018 28 1 3.9797 -3.1601 -0.7067 29 1 1.6639 -6.8402 -0.7129 30 1 2.1188 -6.5575 0.9982 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261013968.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:32 Heat of formation + Delta-G solvation = 61.173388 kcal Electronic energy + Delta-G solvation = -15665.859640 eV Core-core repulsion = 13166.607652 eV Total energy + Delta-G solvation = -2499.251988 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.068 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.36834 -36.35941 -34.32634 -33.01386 -31.58274 -28.12420 -27.39364 -25.48733 -22.58603 -21.67214 -21.26013 -19.37799 -17.85050 -16.51715 -15.56854 -15.08945 -14.73393 -14.54791 -13.80383 -13.53760 -13.18282 -12.78878 -12.68319 -12.46428 -11.57159 -11.46760 -11.29027 -11.25108 -10.83321 -10.73333 -10.42260 -10.17392 -9.99440 -9.72441 -9.61265 -9.21529 -8.66181 -7.83265 -7.60129 -7.29122 -6.66271 -4.96197 2.28748 2.35983 2.63347 2.81269 2.95265 2.97650 3.06788 3.74147 4.35121 4.70698 4.81109 5.28558 5.44623 5.63859 5.66948 5.73522 5.79548 5.83567 5.93730 6.11551 6.17892 6.21691 6.31111 6.46493 6.78278 6.80254 6.94038 7.00092 7.20105 7.58459 7.84871 8.27704 8.55708 8.83316 9.92158 10.04033 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.015742 B = 0.011143 C = 0.006677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.252992 B = 2512.084909 C = 4192.764769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.699 5.699 2 C 0.069 3.931 3 Si 0.912 3.088 4 H -0.266 1.266 5 H -0.273 1.273 6 H -0.259 1.259 7 C -0.408 4.408 8 H 0.090 0.910 9 C 0.289 3.711 10 N -0.503 5.503 11 C 0.348 3.652 12 C -0.083 4.083 13 C -0.158 4.158 14 C -0.164 4.164 15 N -0.613 5.613 16 C 0.157 3.843 17 C -0.304 4.304 18 C 0.021 3.979 19 S -0.307 6.307 20 C -0.004 4.004 21 H 0.278 0.722 22 H 0.108 0.892 23 H 0.130 0.870 24 H 0.081 0.919 25 H 0.086 0.914 26 H 0.092 0.908 27 H 0.083 0.917 28 H 0.096 0.904 29 H 0.104 0.896 30 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.231 -1.196 0.901 1.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.320 5.320 2 C -0.159 4.159 3 Si 0.735 3.265 4 H -0.191 1.191 5 H -0.198 1.198 6 H -0.183 1.183 7 C -0.441 4.441 8 H 0.108 0.892 9 C 0.159 3.841 10 N -0.222 5.222 11 C 0.078 3.922 12 C -0.103 4.103 13 C -0.196 4.196 14 C -0.202 4.202 15 N -0.337 5.337 16 C 0.018 3.982 17 C -0.315 4.315 18 C -0.128 4.128 19 S -0.081 6.081 20 C -0.153 4.153 21 H 0.089 0.911 22 H 0.126 0.874 23 H 0.148 0.852 24 H 0.099 0.901 25 H 0.104 0.896 26 H 0.110 0.890 27 H 0.102 0.898 28 H 0.115 0.885 29 H 0.123 0.877 30 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -0.415 -1.650 0.370 1.741 hybrid contribution 0.381 1.151 0.533 1.324 sum -0.034 -0.499 0.903 1.032 Atomic orbital electron populations 1.70021 1.07364 1.28495 1.26125 1.26126 0.95019 1.01397 0.93347 0.86233 0.80512 0.80166 0.79543 1.19109 1.19823 1.18294 1.19734 0.94552 0.88945 1.40884 0.89210 1.18534 0.87726 0.90533 0.87309 1.69108 1.07051 1.25771 1.20257 1.21927 0.94540 0.84542 0.91232 1.20337 0.88298 0.97151 1.04559 1.23094 1.01029 0.97638 0.97849 1.22811 1.00901 1.04069 0.92409 1.67752 1.08079 1.30202 1.27704 1.21222 0.90564 0.91985 0.94455 1.21543 0.93523 0.96150 1.20241 1.22296 0.96085 0.91467 1.02969 1.87329 1.22469 1.14415 1.83872 1.22514 0.91298 0.97209 1.04289 0.91051 0.87417 0.85201 0.90057 0.89605 0.88953 0.89832 0.88534 0.87719 0.88426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -16.73 11.03 55.55 0.61 -16.11 16 2 C 0.07 1.60 5.50 -17.34 -0.10 1.51 16 3 Si 0.91 17.08 29.56 -169.99 -5.02 12.06 16 4 H -0.27 -4.97 7.11 56.52 0.40 -4.57 16 5 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 6 H -0.26 -4.79 7.11 56.52 0.40 -4.39 16 7 C -0.41 -10.02 8.98 -37.62 -0.34 -10.36 16 8 H 0.09 2.04 7.02 -52.49 -0.37 1.67 16 9 C 0.29 7.52 6.59 -84.39 -0.56 6.96 16 10 N -0.50 -13.11 6.92 -8.40 -0.06 -13.16 16 11 C 0.35 8.55 7.33 -156.94 -1.15 7.40 16 12 C -0.08 -1.70 6.24 -91.77 -0.57 -2.27 16 13 C -0.16 -2.95 10.01 -26.73 -0.27 -3.22 16 14 C -0.16 -2.95 10.23 -26.73 -0.27 -3.22 16 15 N -0.61 -15.02 10.36 -6.41 -0.07 -15.09 16 16 C 0.16 3.65 7.05 -81.24 -0.57 3.08 16 17 C -0.30 -7.22 5.98 -102.73 -0.61 -7.84 16 18 C 0.02 0.41 6.54 36.67 0.24 0.65 16 19 S -0.31 -5.72 23.44 -107.50 -2.52 -8.24 16 20 C 0.00 -0.08 7.39 36.73 0.27 0.19 16 21 H 0.28 5.99 8.29 -40.82 -0.34 5.66 16 22 H 0.11 2.02 8.14 -51.93 -0.42 1.60 16 23 H 0.13 2.79 7.07 -51.93 -0.37 2.42 16 24 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 25 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 26 H 0.09 1.84 8.14 -51.93 -0.42 1.41 16 27 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 28 H 0.10 1.87 7.80 -51.93 -0.40 1.46 16 29 H 0.10 1.83 8.14 -51.93 -0.42 1.41 16 30 H 0.10 1.67 8.14 -51.93 -0.42 1.24 16 LS Contribution 271.65 15.07 4.09 4.09 Total: -1.00 -27.32 271.65 -10.13 -37.44 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -3.23 Total: 6.13 kcal Atomic # 6 Polarization: -3.19 SS G_CDS: -3.93 Total: -7.12 kcal Atomic # 7 Polarization: -44.85 SS G_CDS: 0.49 Total: -44.37 kcal Atomic # 14 Polarization: 17.08 SS G_CDS: -5.02 Total: 12.06 kcal Atomic # 16 Polarization: -5.72 SS G_CDS: -2.52 Total: -8.24 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -27.32 -10.13 -37.44 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261013968.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.618 kcal (2) G-P(sol) polarization free energy of solvation -27.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds