Wall clock time and date at job start Mon Mar 30 2020 05:47:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30676 * 1 3 3 Si 1.86805 * 119.99689 * 2 1 4 4 H 1.48501 * 109.46956 * 270.00236 * 3 2 1 5 5 H 1.48507 * 109.46839 * 29.99767 * 3 2 1 6 6 H 1.48494 * 109.47035 * 149.99759 * 3 2 1 7 7 C 1.40106 * 120.00513 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00363 * 179.97438 * 7 2 1 9 9 C 1.41555 * 120.00056 * 0.02562 * 7 2 1 10 10 N 1.33618 * 120.28300 * 0.02562 * 9 7 2 11 11 C 1.31370 * 120.17556 * 179.97438 * 10 9 7 12 12 C 1.50704 * 119.12945 * 179.97438 * 11 10 9 13 13 C 1.53001 * 117.49677 * 8.62392 * 12 11 10 14 14 C 1.53000 * 60.00028 * 252.50996 * 13 12 11 15 15 N 1.32506 * 121.85411 * 0.06339 * 11 10 9 16 16 C 1.33779 * 121.93367 * 359.84413 * 15 11 10 17 17 C 1.37638 * 118.46958 * 0.16807 * 16 15 11 18 18 C 1.52051 * 115.57173 * 179.97438 * 17 16 15 19 19 S 1.83286 * 103.59974 * 17.48993 * 18 17 16 20 20 C 1.52165 * 125.80072 * 180.18855 * 16 15 11 21 21 H 0.96997 * 120.00193 * 359.97438 * 1 2 3 22 22 H 1.09002 * 115.55235 * 154.32577 * 12 11 10 23 23 H 1.09000 * 117.49965 * 359.97438 * 13 12 11 24 24 H 1.08994 * 117.50313 * 145.02042 * 13 12 11 25 25 H 1.09001 * 117.49914 * 252.51261 * 14 13 12 26 26 H 1.08999 * 117.51834 * 107.47962 * 14 13 12 27 27 H 1.09002 * 110.62553 * 258.91640 * 18 17 16 28 28 H 1.09004 * 110.62561 * 136.06087 * 18 17 16 29 29 H 1.08999 * 110.62232 * 44.09437 * 20 16 15 30 30 H 1.08999 * 110.61920 * 281.09872 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.4881 2.0465 -1.4001 5 1 1.4380 2.6527 0.7000 6 1 3.5382 1.4403 0.7001 7 6 2.0074 -1.2133 0.0005 8 1 3.0873 -1.2133 0.0001 9 6 1.2998 -2.4393 0.0005 10 7 -0.0364 -2.4460 -0.0005 11 6 -0.6910 -3.5850 -0.0010 12 6 -2.1979 -3.5651 -0.0016 13 6 -2.8864 -2.2140 -0.2050 14 6 -2.8958 -2.8774 1.1736 15 7 -0.0637 -4.7521 0.0007 16 6 1.2714 -4.8379 0.0000 17 6 2.0037 -3.6725 0.0009 18 6 3.5142 -3.8465 0.0006 19 16 3.7478 -5.5833 -0.5363 20 6 2.0806 -6.1265 -0.0022 21 1 -0.4850 0.8400 0.0004 22 1 -2.6796 -4.4450 -0.4280 23 1 -2.2495 -1.3395 -0.3381 24 1 -3.8212 -2.2047 -0.7655 25 1 -3.8367 -3.3048 1.5201 26 1 -2.2650 -2.4398 1.9474 27 1 3.9182 -3.6965 1.0018 28 1 3.9797 -3.1601 -0.7067 29 1 1.6639 -6.8402 -0.7129 30 1 2.1188 -6.5575 0.9982 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261013968.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:32 Heat of formation + Delta-G solvation = 47.351101 kcal Electronic energy + Delta-G solvation = -15666.459019 eV Core-core repulsion = 13166.607652 eV Total energy + Delta-G solvation = -2499.851367 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.068 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.13312 -37.91295 -36.09870 -34.70569 -33.37196 -29.76194 -29.15966 -27.18932 -24.25739 -23.18674 -22.97291 -21.05239 -19.63820 -18.18618 -17.25655 -16.64592 -16.33665 -16.16873 -15.35656 -15.22164 -14.81580 -14.40893 -14.28311 -14.11746 -13.19294 -13.02134 -12.91720 -12.81566 -12.55931 -12.20180 -11.97182 -11.75103 -11.64610 -11.25430 -11.19181 -10.98914 -10.47900 -9.58724 -9.42329 -8.76775 -8.41999 -6.81664 0.52828 0.79301 0.93280 1.21640 1.40672 1.51900 1.54951 2.16777 2.67021 3.09018 3.18837 3.65660 3.72683 4.06801 4.10995 4.17923 4.26457 4.33540 4.38199 4.50222 4.59624 4.63991 4.82325 4.94387 5.09666 5.19032 5.24049 5.31108 5.63662 5.81061 6.02874 6.47450 6.71991 7.01072 8.12558 8.29077 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.015742 B = 0.011143 C = 0.006677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.252992 B = 2512.084909 C = 4192.764769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.726 5.726 2 C 0.026 3.974 3 Si 0.988 3.012 4 H -0.263 1.263 5 H -0.266 1.266 6 H -0.254 1.254 7 C -0.429 4.429 8 H 0.100 0.900 9 C 0.251 3.749 10 N -0.526 5.526 11 C 0.326 3.674 12 C -0.105 4.105 13 C -0.150 4.150 14 C -0.144 4.144 15 N -0.628 5.628 16 C 0.140 3.860 17 C -0.325 4.325 18 C 0.021 3.979 19 S -0.280 6.280 20 C -0.001 4.001 21 H 0.286 0.714 22 H 0.124 0.876 23 H 0.098 0.902 24 H 0.117 0.883 25 H 0.126 0.874 26 H 0.065 0.935 27 H 0.094 0.906 28 H 0.099 0.901 29 H 0.119 0.881 30 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.090 -1.146 0.984 1.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.347 5.347 2 C -0.199 4.199 3 Si 0.808 3.192 4 H -0.188 1.188 5 H -0.191 1.191 6 H -0.177 1.177 7 C -0.462 4.462 8 H 0.118 0.882 9 C 0.121 3.879 10 N -0.246 5.246 11 C 0.056 3.944 12 C -0.125 4.125 13 C -0.188 4.188 14 C -0.182 4.182 15 N -0.353 5.353 16 C 0.001 3.999 17 C -0.336 4.336 18 C -0.128 4.128 19 S -0.054 6.054 20 C -0.149 4.149 21 H 0.097 0.903 22 H 0.142 0.858 23 H 0.116 0.884 24 H 0.135 0.865 25 H 0.144 0.856 26 H 0.084 0.916 27 H 0.113 0.887 28 H 0.117 0.883 29 H 0.137 0.863 30 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -0.269 -1.625 0.454 1.708 hybrid contribution 0.315 1.104 0.500 1.252 sum 0.046 -0.521 0.954 1.088 Atomic orbital electron populations 1.70104 1.08820 1.29879 1.25932 1.27025 0.95837 1.04496 0.92546 0.85097 0.79148 0.75402 0.79554 1.18774 1.19078 1.17697 1.20121 0.95234 0.89557 1.41325 0.88242 1.19092 0.88451 0.92101 0.88260 1.69128 1.07459 1.26630 1.21364 1.22727 0.96491 0.84450 0.90748 1.20525 0.86353 0.98681 1.06952 1.23057 1.01530 0.95415 0.98803 1.22829 1.01465 1.02718 0.91176 1.67859 1.08864 1.30184 1.28393 1.21914 0.90589 0.93787 0.93637 1.21883 0.95552 0.95805 1.20336 1.22257 0.93833 0.92893 1.03809 1.87197 1.21688 1.12586 1.83904 1.22614 0.90751 0.95575 1.05993 0.90308 0.85818 0.88373 0.86479 0.85570 0.91586 0.88740 0.88294 0.86252 0.86399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -35.49 11.03 21.85 0.24 -35.25 16 2 C 0.03 1.23 5.50 85.32 0.47 1.70 16 3 Si 0.99 34.78 29.56 68.60 2.03 36.81 16 4 H -0.26 -9.07 7.11 99.48 0.71 -8.36 16 5 H -0.27 -8.99 7.11 99.48 0.71 -8.28 16 6 H -0.25 -8.61 7.11 99.48 0.71 -7.90 16 7 C -0.43 -21.49 8.98 23.54 0.21 -21.28 16 8 H 0.10 4.57 7.02 -2.91 -0.02 4.55 16 9 C 0.25 13.42 6.59 40.62 0.27 13.69 16 10 N -0.53 -28.31 6.92 -180.48 -1.25 -29.56 16 11 C 0.33 16.36 7.33 138.66 1.02 17.38 16 12 C -0.11 -4.26 6.24 -11.54 -0.07 -4.33 16 13 C -0.15 -5.50 10.01 30.59 0.31 -5.19 16 14 C -0.14 -5.03 10.23 30.59 0.31 -4.72 16 15 N -0.63 -31.13 10.36 -174.21 -1.80 -32.93 16 16 C 0.14 6.50 7.05 42.59 0.30 6.80 16 17 C -0.33 -15.68 5.98 -18.64 -0.11 -15.79 16 18 C 0.02 0.82 6.54 71.67 0.47 1.29 16 19 S -0.28 -9.95 23.44 -56.49 -1.32 -11.28 16 20 C 0.00 -0.03 7.39 71.71 0.53 0.50 16 21 H 0.29 12.51 8.29 -92.71 -0.77 11.74 16 22 H 0.12 4.52 8.14 -2.39 -0.02 4.50 16 23 H 0.10 4.30 7.07 -2.39 -0.02 4.28 16 24 H 0.12 3.38 8.14 -2.39 -0.02 3.36 16 25 H 0.13 3.37 8.14 -2.39 -0.02 3.35 16 26 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 27 H 0.09 3.47 8.14 -2.39 -0.02 3.45 16 28 H 0.10 3.80 7.80 -2.39 -0.02 3.78 16 29 H 0.12 3.96 8.14 -2.39 -0.02 3.94 16 30 H 0.12 3.79 8.14 -2.39 -0.02 3.77 16 Total: -1.00 -60.09 271.65 2.75 -57.33 By element: Atomic # 1 Polarization: 23.66 SS G_CDS: 1.16 Total: 24.82 kcal Atomic # 6 Polarization: -13.65 SS G_CDS: 3.70 Total: -9.95 kcal Atomic # 7 Polarization: -94.92 SS G_CDS: -2.81 Total: -97.74 kcal Atomic # 14 Polarization: 34.78 SS G_CDS: 2.03 Total: 36.81 kcal Atomic # 16 Polarization: -9.95 SS G_CDS: -1.32 Total: -11.28 kcal Total: -60.09 2.75 -57.33 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261013968.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.686 kcal (2) G-P(sol) polarization free energy of solvation -60.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds