Wall clock time and date at job start Mon Mar 30 2020 06:14:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35963 * 116.99776 * 2 1 4 4 C 1.38294 * 120.06569 * 0.42988 * 3 2 1 5 5 C 1.38703 * 120.61720 * 180.02562 * 4 3 2 6 6 C 1.37731 * 120.32500 * 359.76684 * 5 4 3 7 7 C 1.39494 * 119.70765 * 0.02562 * 6 5 4 8 8 C 1.46985 * 134.25653 * 179.97438 * 7 6 5 9 9 O 1.36174 * 126.92245 * 0.04088 * 8 7 6 10 10 C 1.34278 * 106.14545 * 180.02562 * 8 7 6 11 11 C 1.50704 * 124.97878 * 179.97438 * 10 8 7 12 12 C 1.50704 * 109.47254 * 89.99591 * 11 10 8 13 13 H 1.08006 * 119.99583 * 359.97438 * 12 11 10 14 14 C 1.37874 * 120.00067 * 180.02562 * 12 11 10 15 15 N 1.31512 * 119.99890 * 359.97438 * 14 12 11 16 16 Si 1.86805 * 119.99830 * 179.97438 * 14 12 11 17 17 H 1.48491 * 109.47171 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.46794 * 120.00190 * 16 14 12 19 19 H 1.48503 * 109.47016 * 239.99693 * 16 14 12 20 20 O 1.34704 * 110.04279 * 359.97438 * 10 8 7 21 21 C 1.34892 * 110.89650 * 0.02562 * 20 10 8 22 22 H 1.08998 * 109.47346 * 59.99931 * 1 2 3 23 23 H 1.09003 * 109.47040 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46792 * 299.99289 * 1 2 3 25 25 H 1.07994 * 119.68774 * 359.77382 * 4 3 2 26 26 H 1.08001 * 119.84235 * 179.79537 * 5 4 3 27 27 H 1.07993 * 120.15400 * 179.97438 * 6 5 4 28 28 H 0.96707 * 113.99579 * 90.00762 * 9 8 7 29 29 H 1.09000 * 109.47095 * 209.99361 * 11 10 8 30 30 H 1.08998 * 109.46798 * 329.99638 * 11 10 8 31 31 H 0.97007 * 119.99690 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2115 0.0000 4 6 1.2943 2.3721 0.0090 5 6 1.9121 3.6140 0.0085 6 6 3.2862 3.7072 0.0040 7 6 4.0579 2.5451 -0.0008 8 6 5.5023 2.2730 -0.0067 9 8 6.5078 3.1913 -0.0084 10 6 5.6304 0.9363 -0.0098 11 6 6.9420 0.1941 -0.0168 12 6 7.3852 -0.0559 1.4017 13 1 6.7780 0.2885 2.2259 14 6 8.5663 -0.7235 1.6474 15 7 9.3058 -1.1425 0.6439 16 14 9.1160 -1.0328 3.4058 17 1 8.1144 -0.4665 4.3444 18 1 9.2384 -2.4948 3.6361 19 1 10.4320 -0.3838 3.6344 20 8 4.4148 0.3560 -0.0059 21 6 3.4377 1.2860 -0.0006 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 0.2161 2.3109 0.0123 26 1 1.3126 4.5124 0.0123 27 1 3.7643 4.6755 0.0032 28 1 6.8015 3.4545 0.8747 29 1 6.8178 -0.7584 -0.5318 30 1 7.6943 0.7908 -0.5327 31 1 10.1366 -1.6125 0.8168 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261015384.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:55 Heat of formation + Delta-G solvation = -56.352049 kcal Electronic energy + Delta-G solvation = -17461.984162 eV Core-core repulsion = 14482.590266 eV Total energy + Delta-G solvation = -2979.393895 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.088 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.95170 -39.31866 -36.81614 -36.50312 -33.42492 -31.04985 -30.44108 -29.64079 -27.56295 -26.51844 -23.56000 -22.54680 -21.13001 -20.44187 -18.30115 -17.45428 -16.70673 -16.16766 -15.89128 -15.64573 -15.08921 -14.93198 -14.76659 -14.21716 -13.51029 -12.99169 -12.70629 -12.48773 -12.41940 -12.05698 -11.60740 -11.47862 -11.21503 -11.09476 -10.91110 -10.81825 -10.25319 -9.69552 -9.59825 -9.06611 -8.55746 -8.04805 -7.32437 -6.17047 -4.23414 1.26916 1.56639 2.81548 3.18088 3.24408 3.32057 3.32282 3.37559 3.89269 4.34709 4.62131 4.86632 5.01182 5.08524 5.08966 5.18330 5.25312 5.41577 5.47525 5.63871 5.80021 5.97883 6.26471 6.48489 6.66120 6.73144 6.83918 7.06871 7.30953 7.40934 7.76019 7.86908 8.05749 8.27487 8.78653 9.41008 10.92458 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.027343 B = 0.006102 C = 0.005449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.769027 B = 4587.631774 C = 5137.584095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.313 6.313 3 C 0.146 3.854 4 C -0.206 4.206 5 C -0.103 4.103 6 C -0.112 4.112 7 C -0.095 4.095 8 C -0.042 4.042 9 O -0.455 6.455 10 C 0.096 3.904 11 C 0.081 3.919 12 C -0.522 4.522 13 H 0.061 0.939 14 C 0.063 3.937 15 N -0.889 5.889 16 Si 0.902 3.098 17 H -0.272 1.272 18 H -0.281 1.281 19 H -0.281 1.281 20 O -0.172 6.172 21 C 0.018 3.982 22 H 0.054 0.946 23 H 0.099 0.901 24 H 0.055 0.945 25 H 0.134 0.866 26 H 0.127 0.873 27 H 0.126 0.874 28 H 0.378 0.622 29 H 0.044 0.956 30 H 0.064 0.936 31 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.004 6.963 -0.462 16.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.226 6.226 3 C 0.101 3.899 4 C -0.225 4.225 5 C -0.121 4.121 6 C -0.130 4.130 7 C -0.097 4.097 8 C -0.088 4.088 9 O -0.262 6.262 10 C 0.046 3.954 11 C 0.045 3.955 12 C -0.560 4.560 13 H 0.079 0.921 14 C -0.139 4.139 15 N -0.527 5.527 16 Si 0.729 3.271 17 H -0.196 1.196 18 H -0.207 1.207 19 H -0.207 1.207 20 O -0.073 6.073 21 C -0.030 4.030 22 H 0.073 0.927 23 H 0.117 0.883 24 H 0.073 0.927 25 H 0.152 0.848 26 H 0.145 0.855 27 H 0.144 0.856 28 H 0.231 0.769 29 H 0.062 0.938 30 H 0.082 0.918 31 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -14.863 6.343 -1.130 16.200 hybrid contribution 0.147 0.133 1.448 1.462 sum -14.716 6.476 0.318 16.081 Atomic orbital electron populations 1.23044 0.78584 1.03876 1.01173 1.86188 1.21142 1.26399 1.88884 1.17682 0.86769 0.85268 1.00205 1.20771 0.99356 0.91168 1.11178 1.20660 0.94018 0.96652 1.00749 1.20353 0.92831 0.96818 1.02984 1.19983 0.93838 0.92965 1.02868 1.18418 0.85036 0.88043 1.17331 1.84869 1.50176 1.58436 1.32697 1.24089 0.85769 0.92255 0.93280 1.18255 0.82177 0.95759 0.99325 1.20948 1.06426 1.38030 0.90578 0.92121 1.24970 0.96130 0.95061 0.97769 1.69954 1.13936 1.38042 1.30734 0.86363 0.78580 0.78147 0.83961 1.19601 1.20707 1.20696 1.84250 1.13308 1.34184 1.75568 1.18519 0.87776 0.87541 1.09131 0.92708 0.88293 0.92680 0.84835 0.85548 0.85648 0.76875 0.93773 0.91794 0.92492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.81 101.05 0.99 1.27 16 2 O -0.31 -5.04 10.50 -19.62 -0.21 -5.24 16 3 C 0.15 2.50 6.70 -39.15 -0.26 2.24 16 4 C -0.21 -2.80 9.03 -39.39 -0.36 -3.15 16 5 C -0.10 -1.35 10.03 -39.59 -0.40 -1.75 16 6 C -0.11 -1.76 10.10 -39.30 -0.40 -2.15 16 7 C -0.09 -1.86 6.40 -105.09 -0.67 -2.53 16 8 C -0.04 -0.90 7.49 -37.44 -0.28 -1.18 16 9 O -0.46 -9.01 13.61 -20.30 -0.28 -9.29 16 10 C 0.10 2.27 6.44 -35.70 -0.23 2.04 16 11 C 0.08 2.13 5.43 -29.03 -0.16 1.98 16 12 C -0.52 -14.47 9.09 -34.44 -0.31 -14.79 16 13 H 0.06 1.67 7.74 -52.48 -0.41 1.27 16 14 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 15 N -0.89 -25.67 13.29 55.43 0.74 -24.94 16 16 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 17 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 18 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 20 O -0.17 -4.03 10.59 2.96 0.03 -4.00 16 21 C 0.02 0.37 7.35 -38.37 -0.28 0.09 16 22 H 0.05 0.45 7.67 -51.93 -0.40 0.06 16 23 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.05 0.46 7.64 -51.93 -0.40 0.07 16 25 H 0.13 1.34 6.26 -52.49 -0.33 1.01 16 26 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 27 H 0.13 1.72 8.06 -52.49 -0.42 1.29 16 28 H 0.38 5.95 9.07 45.56 0.41 6.37 16 29 H 0.04 1.21 8.14 -51.93 -0.42 0.78 16 30 H 0.06 1.73 8.14 -51.93 -0.42 1.30 16 31 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 279.39 15.07 4.21 4.21 Total: -1.00 -32.00 279.39 -5.34 -37.35 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: -2.37 Total: 2.10 kcal Atomic # 6 Polarization: -13.83 SS G_CDS: -2.45 Total: -16.28 kcal Atomic # 7 Polarization: -25.67 SS G_CDS: 0.74 Total: -24.94 kcal Atomic # 8 Polarization: -18.08 SS G_CDS: -0.45 Total: -18.53 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -32.00 -5.34 -37.35 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261015384.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.004 kcal (2) G-P(sol) polarization free energy of solvation -32.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds