Wall clock time and date at job start Mon Mar 30 2020 06:14:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35963 * 116.99776 * 2 1 4 4 C 1.38294 * 120.06569 * 0.42988 * 3 2 1 5 5 C 1.38703 * 120.61720 * 180.02562 * 4 3 2 6 6 C 1.37731 * 120.32500 * 359.76684 * 5 4 3 7 7 C 1.39494 * 119.70765 * 0.02562 * 6 5 4 8 8 C 1.46985 * 134.25653 * 179.97438 * 7 6 5 9 9 O 1.36174 * 126.92245 * 0.04088 * 8 7 6 10 10 C 1.34278 * 106.14545 * 180.02562 * 8 7 6 11 11 C 1.50704 * 124.97878 * 179.97438 * 10 8 7 12 12 C 1.50704 * 109.47254 * 89.99591 * 11 10 8 13 13 H 1.08006 * 119.99583 * 359.97438 * 12 11 10 14 14 C 1.37874 * 120.00067 * 180.02562 * 12 11 10 15 15 N 1.31512 * 119.99890 * 359.97438 * 14 12 11 16 16 Si 1.86805 * 119.99830 * 179.97438 * 14 12 11 17 17 H 1.48491 * 109.47171 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.46794 * 120.00190 * 16 14 12 19 19 H 1.48503 * 109.47016 * 239.99693 * 16 14 12 20 20 O 1.34704 * 110.04279 * 359.97438 * 10 8 7 21 21 C 1.34892 * 110.89650 * 0.02562 * 20 10 8 22 22 H 1.08998 * 109.47346 * 59.99931 * 1 2 3 23 23 H 1.09003 * 109.47040 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46792 * 299.99289 * 1 2 3 25 25 H 1.07994 * 119.68774 * 359.77382 * 4 3 2 26 26 H 1.08001 * 119.84235 * 179.79537 * 5 4 3 27 27 H 1.07993 * 120.15400 * 179.97438 * 6 5 4 28 28 H 0.96707 * 113.99579 * 90.00762 * 9 8 7 29 29 H 1.09000 * 109.47095 * 209.99361 * 11 10 8 30 30 H 1.08998 * 109.46798 * 329.99638 * 11 10 8 31 31 H 0.97007 * 119.99690 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2115 0.0000 4 6 1.2943 2.3721 0.0090 5 6 1.9121 3.6140 0.0085 6 6 3.2862 3.7072 0.0040 7 6 4.0579 2.5451 -0.0008 8 6 5.5023 2.2730 -0.0067 9 8 6.5078 3.1913 -0.0084 10 6 5.6304 0.9363 -0.0098 11 6 6.9420 0.1941 -0.0168 12 6 7.3852 -0.0559 1.4017 13 1 6.7780 0.2885 2.2259 14 6 8.5663 -0.7235 1.6474 15 7 9.3058 -1.1425 0.6439 16 14 9.1160 -1.0328 3.4058 17 1 8.1144 -0.4665 4.3444 18 1 9.2384 -2.4948 3.6361 19 1 10.4320 -0.3838 3.6344 20 8 4.4148 0.3560 -0.0059 21 6 3.4377 1.2860 -0.0006 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 0.2161 2.3109 0.0123 26 1 1.3126 4.5124 0.0123 27 1 3.7643 4.6755 0.0032 28 1 6.8015 3.4545 0.8747 29 1 6.8178 -0.7584 -0.5318 30 1 7.6943 0.7908 -0.5327 31 1 10.1366 -1.6125 0.8168 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261015384.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:55 Heat of formation + Delta-G solvation = -79.573728 kcal Electronic energy + Delta-G solvation = -17462.991129 eV Core-core repulsion = 14482.590266 eV Total energy + Delta-G solvation = -2980.400863 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.088 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.46952 -40.49255 -38.36091 -37.79206 -35.50651 -32.75167 -31.94656 -30.93910 -28.86284 -27.87385 -25.44640 -23.89585 -22.48461 -22.07768 -19.68667 -18.75854 -18.72575 -17.68244 -17.29427 -17.01567 -16.53898 -16.33172 -16.19462 -15.53736 -15.05762 -14.54961 -14.39524 -14.16176 -13.64368 -13.48557 -13.26715 -12.85571 -12.69230 -12.63310 -12.23879 -12.15586 -12.12251 -11.68713 -11.32780 -10.69683 -10.43625 -9.48992 -8.75063 -8.28266 -6.45551 -0.07184 0.30048 1.21073 1.39671 1.40583 1.53990 1.72826 2.23273 2.36896 2.65017 3.02371 3.14083 3.58701 3.89016 4.02236 4.19213 4.31014 4.40451 4.42614 4.42789 4.57902 4.73946 4.98408 5.07367 5.13567 5.21269 5.31857 5.44330 5.59532 5.70220 5.94342 6.01261 6.44494 6.62016 6.79499 7.23621 8.80713 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.027343 B = 0.006102 C = 0.005449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.769027 B = 4587.631774 C = 5137.584095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.345 6.345 3 C 0.129 3.871 4 C -0.182 4.182 5 C -0.082 4.082 6 C -0.117 4.117 7 C -0.116 4.116 8 C -0.028 4.028 9 O -0.463 6.463 10 C 0.047 3.953 11 C 0.094 3.906 12 C -0.540 4.540 13 H 0.056 0.944 14 C 0.013 3.987 15 N -0.924 5.924 16 Si 0.976 3.024 17 H -0.266 1.266 18 H -0.275 1.275 19 H -0.269 1.269 20 O -0.201 6.201 21 C -0.019 4.019 22 H 0.076 0.924 23 H 0.115 0.885 24 H 0.075 0.925 25 H 0.180 0.820 26 H 0.179 0.821 27 H 0.148 0.852 28 H 0.397 0.603 29 H 0.014 0.986 30 H 0.044 0.956 31 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.885 9.039 0.728 20.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.260 6.260 3 C 0.084 3.916 4 C -0.200 4.200 5 C -0.100 4.100 6 C -0.135 4.135 7 C -0.118 4.118 8 C -0.075 4.075 9 O -0.272 6.272 10 C -0.002 4.002 11 C 0.057 3.943 12 C -0.577 4.577 13 H 0.074 0.926 14 C -0.187 4.187 15 N -0.563 5.563 16 Si 0.799 3.201 17 H -0.190 1.190 18 H -0.200 1.200 19 H -0.194 1.194 20 O -0.104 6.104 21 C -0.066 4.066 22 H 0.094 0.906 23 H 0.133 0.867 24 H 0.094 0.906 25 H 0.197 0.803 26 H 0.196 0.804 27 H 0.165 0.835 28 H 0.252 0.748 29 H 0.032 0.968 30 H 0.062 0.938 31 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -17.759 8.435 0.062 19.660 hybrid contribution 0.797 -0.421 1.020 1.361 sum -16.962 8.014 1.081 18.790 Atomic orbital electron populations 1.23460 0.75403 1.05824 1.03090 1.86152 1.24481 1.26464 1.88889 1.18034 0.85768 0.87004 1.00822 1.21394 1.01365 0.89837 1.07395 1.21281 0.93147 0.98380 0.97167 1.20754 0.94025 0.96222 1.02491 1.20107 0.92474 0.94311 1.04873 1.18625 0.86639 0.87416 1.14788 1.84782 1.50212 1.57877 1.34341 1.23522 0.85464 0.93094 0.98120 1.17817 0.83841 0.94236 0.98384 1.21197 1.06883 1.38528 0.91121 0.92568 1.25922 0.95922 0.94395 1.02458 1.70069 1.14458 1.38564 1.33176 0.85243 0.78418 0.78218 0.78225 1.19023 1.20041 1.19380 1.84125 1.13721 1.35669 1.76893 1.19270 0.88949 0.87449 1.10929 0.90590 0.86703 0.90641 0.80274 0.80392 0.83472 0.74755 0.96754 0.93821 0.92010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.81 113.37 1.11 1.38 16 2 O -0.35 -10.78 10.50 -93.13 -0.98 -11.76 16 3 C 0.13 4.24 6.70 22.55 0.15 4.39 16 4 C -0.18 -4.08 9.03 22.39 0.20 -3.87 16 5 C -0.08 -1.72 10.03 22.26 0.22 -1.50 16 6 C -0.12 -3.32 10.10 22.45 0.23 -3.09 16 7 C -0.12 -4.54 6.40 -20.17 -0.13 -4.67 16 8 C -0.03 -1.26 7.49 23.66 0.18 -1.08 16 9 O -0.46 -18.79 13.61 -95.54 -1.30 -20.09 16 10 C 0.05 2.39 6.44 24.78 0.16 2.55 16 11 C 0.09 5.35 5.43 29.10 0.16 5.51 16 12 C -0.54 -31.53 9.09 25.60 0.23 -31.29 16 13 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 14 C 0.01 0.71 5.46 84.65 0.46 1.18 16 15 N -0.92 -55.38 13.29 21.45 0.28 -55.09 16 16 Si 0.98 44.05 29.54 68.60 2.03 46.08 16 17 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 18 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 19 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 20 O -0.20 -10.15 10.59 -12.31 -0.13 -10.28 16 21 C -0.02 -0.82 7.35 23.05 0.17 -0.65 16 22 H 0.08 0.94 7.67 -2.39 -0.02 0.92 16 23 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 24 H 0.08 0.94 7.64 -2.39 -0.02 0.92 16 25 H 0.18 2.36 6.26 -2.91 -0.02 2.34 16 26 H 0.18 2.02 8.06 -2.91 -0.02 1.99 16 27 H 0.15 3.48 8.06 -2.91 -0.02 3.46 16 28 H 0.40 12.71 9.07 -74.05 -0.67 12.04 16 29 H 0.01 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.04 2.57 8.14 -2.39 -0.02 2.56 16 31 H 0.27 15.03 8.31 -92.70 -0.77 14.26 16 Total: -1.00 -74.98 279.39 3.54 -71.44 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: 0.50 Total: 10.87 kcal Atomic # 6 Polarization: -34.31 SS G_CDS: 3.15 Total: -31.16 kcal Atomic # 7 Polarization: -55.38 SS G_CDS: 0.28 Total: -55.09 kcal Atomic # 8 Polarization: -39.72 SS G_CDS: -2.41 Total: -42.13 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -74.98 3.54 -71.44 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261015384.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.138 kcal (2) G-P(sol) polarization free energy of solvation -74.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds