Wall clock time and date at job start Mon Mar 30 2020 05:58:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.28726 * 121.08386 * 2 1 4 4 S 1.69393 * 108.98638 * 180.02562 * 3 2 1 5 5 C 1.76514 * 96.11710 * 359.97438 * 4 3 2 6 6 C 1.38784 * 133.55026 * 180.23411 * 5 4 3 7 7 C 1.36720 * 119.75106 * 180.19954 * 6 5 4 8 8 C 1.50702 * 119.92276 * 179.79089 * 7 6 5 9 9 H 1.09004 * 109.46818 * 19.73081 * 8 7 6 10 10 N 1.46902 * 109.46875 * 139.72273 * 8 7 6 11 11 C 1.50696 * 109.47549 * 259.72573 * 8 7 6 12 12 H 1.07999 * 119.99822 * 0.02562 * 11 8 7 13 13 C 1.37884 * 120.00126 * 180.02562 * 11 8 7 14 14 N 1.31514 * 119.99707 * 180.02562 * 13 11 8 15 15 Si 1.86796 * 119.99956 * 0.27447 * 13 11 8 16 16 H 1.48503 * 109.47407 * 269.72718 * 15 13 11 17 17 H 1.48505 * 109.47281 * 29.72474 * 15 13 11 18 18 H 1.48501 * 109.47274 * 149.72572 * 15 13 11 19 19 C 1.38965 * 120.15379 * 359.51829 * 7 6 5 20 20 C 1.36042 * 121.15986 * 0.27845 * 19 7 6 21 21 C 1.40805 * 105.51944 * 0.02562 * 5 4 3 22 22 H 1.08997 * 109.47278 * 269.97525 * 1 2 3 23 23 H 1.08992 * 109.46944 * 29.98367 * 1 2 3 24 24 H 1.09004 * 109.46849 * 149.97760 * 1 2 3 25 25 H 1.07997 * 120.12978 * 359.96941 * 6 5 4 26 26 H 1.00899 * 111.00505 * 296.04706 * 10 8 7 27 27 H 1.00895 * 110.99705 * 60.00811 * 10 8 7 28 28 H 0.97005 * 119.99656 * 179.97438 * 14 13 11 29 29 H 1.08003 * 119.42121 * 180.25328 * 19 7 6 30 30 H 1.08007 * 119.89444 * 179.97438 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1716 1.1024 0.0000 4 16 3.8280 0.7474 -0.0007 5 6 3.6440 -1.0081 -0.0003 6 6 4.5448 -2.0639 0.0036 7 6 4.0822 -3.3504 -0.0013 8 6 5.0569 -4.4998 -0.0019 9 1 6.0286 -4.1522 0.3488 10 7 4.5651 -5.5592 0.8891 11 6 5.1925 -5.0429 -1.4011 12 1 4.6295 -4.5998 -2.2092 13 6 6.0353 -6.1055 -1.6495 14 7 6.1539 -6.5791 -2.8707 15 14 7.0032 -6.8769 -0.2504 16 1 8.3158 -6.1946 -0.1213 17 1 6.2429 -6.7310 1.0169 18 1 7.2203 -8.3182 -0.5343 19 6 2.7152 -3.6007 -0.0002 20 6 1.8132 -2.5824 0.0002 21 6 2.2555 -1.2415 -0.0002 22 1 -0.3634 -0.0004 1.0276 23 1 -0.3633 0.8901 -0.5135 24 1 -0.3633 -0.8898 -0.5142 25 1 5.6072 -1.8701 0.0068 26 1 4.5268 -5.2389 1.8451 27 1 3.6649 -5.8984 0.5850 28 1 6.7472 -7.3264 -3.0455 29 1 2.3628 -4.6216 0.0000 30 1 0.7553 -2.8003 0.0007 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261027367.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:58:16 Heat of formation + Delta-G solvation = 50.800051 kcal Electronic energy + Delta-G solvation = -15204.458636 eV Core-core repulsion = 12704.756826 eV Total energy + Delta-G solvation = -2499.701810 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.068 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.82513 -37.27180 -34.42621 -31.89467 -31.15711 -29.51906 -29.36956 -26.41596 -23.52256 -22.59589 -20.81864 -19.76735 -18.02357 -16.95666 -15.77711 -15.38900 -14.93175 -14.75229 -14.58528 -13.86330 -13.79498 -13.51082 -12.86968 -12.55444 -12.44503 -12.12038 -11.80514 -11.69133 -11.43617 -10.82989 -10.52778 -10.40474 -10.27565 -10.05473 -9.58426 -9.37866 -8.62851 -8.34142 -7.65126 -7.34031 -6.08562 -4.20689 0.74307 1.47688 1.61137 1.98137 2.31610 3.45859 3.56912 3.86158 3.92508 4.40483 4.63247 4.71265 5.11445 5.19333 5.26388 5.32559 5.37983 5.51288 5.66380 5.75498 5.80721 5.90771 6.14265 6.27059 6.51251 6.57455 6.73991 7.02994 7.08007 7.46851 8.03674 8.21368 8.56961 8.90397 9.54114 11.00712 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.038454 B = 0.005899 C = 0.005617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.970645 B = 4745.648523 C = 4984.105348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.160 3.840 3 N -0.457 5.457 4 S 0.155 5.845 5 C -0.118 4.118 6 C -0.090 4.090 7 C -0.022 4.022 8 C 0.217 3.783 9 H 0.051 0.949 10 N -0.833 5.833 11 C -0.525 4.525 12 H 0.071 0.929 13 C 0.087 3.913 14 N -0.896 5.896 15 Si 0.866 3.134 16 H -0.296 1.296 17 H -0.191 1.191 18 H -0.303 1.303 19 C -0.116 4.116 20 C -0.054 4.054 21 C -0.158 4.158 22 H 0.084 0.916 23 H 0.079 0.921 24 H 0.083 0.917 25 H 0.131 0.869 26 H 0.310 0.690 27 H 0.331 0.669 28 H 0.265 0.735 29 H 0.131 0.869 30 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.386 8.985 8.345 15.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.030 4.030 3 N -0.270 5.270 4 S 0.310 5.690 5 C -0.238 4.238 6 C -0.114 4.114 7 C -0.029 4.029 8 C 0.107 3.893 9 H 0.068 0.932 10 N -0.362 5.362 11 C -0.563 4.563 12 H 0.089 0.911 13 C -0.118 4.118 14 N -0.532 5.532 15 Si 0.692 3.308 16 H -0.224 1.224 17 H -0.112 1.112 18 H -0.230 1.230 19 C -0.135 4.135 20 C -0.076 4.076 21 C -0.169 4.169 22 H 0.103 0.897 23 H 0.098 0.902 24 H 0.101 0.899 25 H 0.149 0.851 26 H 0.121 0.879 27 H 0.145 0.855 28 H 0.074 0.926 29 H 0.149 0.851 30 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -7.803 10.668 8.015 15.457 hybrid contribution -0.867 -1.344 0.419 1.653 sum -8.669 9.324 8.433 15.272 Atomic orbital electron populations 1.20624 0.86665 1.04019 1.03592 1.22524 0.98149 0.87361 0.94926 1.75691 1.01595 1.26413 1.23299 1.84692 1.07938 0.97556 1.78828 1.23405 0.96742 0.98760 1.04928 1.19926 0.98715 0.90153 1.02582 1.21264 0.95749 0.96032 0.89866 1.18704 0.91438 0.84363 0.94787 0.93172 1.60082 1.33073 1.38798 1.04229 1.20649 1.28010 1.17286 0.90324 0.91134 1.24977 0.95526 0.95474 0.95782 1.69950 1.37307 1.25335 1.20599 0.87217 0.78884 0.76950 0.87706 1.22381 1.11231 1.23035 1.20662 0.92856 0.99391 1.00636 1.20556 0.99661 0.89498 0.97892 1.20044 0.91484 0.94549 1.10824 0.89743 0.90176 0.89852 0.85125 0.87890 0.85463 0.92617 0.85127 0.85560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.84 10.16 36.01 0.37 -0.47 16 2 C 0.16 2.28 6.88 -81.23 -0.56 1.72 16 3 N -0.46 -7.25 11.84 34.00 0.40 -6.85 16 4 S 0.16 2.47 23.86 -107.50 -2.56 -0.09 16 5 C -0.12 -2.02 6.71 -38.41 -0.26 -2.28 16 6 C -0.09 -1.61 9.63 -39.93 -0.38 -2.00 16 7 C -0.02 -0.41 4.86 -104.90 -0.51 -0.92 16 8 C 0.22 4.55 2.35 -70.02 -0.16 4.38 16 9 H 0.05 1.08 7.42 -51.93 -0.39 0.70 16 10 N -0.83 -15.47 5.64 -6.65 -0.04 -15.50 16 11 C -0.52 -13.84 9.29 -34.44 -0.32 -14.16 16 12 H 0.07 2.08 7.98 -52.49 -0.42 1.66 16 13 C 0.09 2.42 5.47 -17.82 -0.10 2.33 16 14 N -0.90 -26.87 13.96 55.43 0.77 -26.09 16 15 Si 0.87 20.65 26.94 -169.99 -4.58 16.07 16 16 H -0.30 -7.23 7.11 56.52 0.40 -6.83 16 17 H -0.19 -4.13 5.15 56.52 0.29 -3.84 16 18 H -0.30 -7.51 7.11 56.52 0.40 -7.11 16 19 C -0.12 -1.87 9.18 -40.10 -0.37 -2.24 16 20 C -0.05 -0.77 9.72 -39.25 -0.38 -1.15 16 21 C -0.16 -2.48 6.04 -105.14 -0.64 -3.11 16 22 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 24 H 0.08 0.67 7.54 -51.93 -0.39 0.28 16 25 H 0.13 2.22 8.02 -52.49 -0.42 1.80 16 26 H 0.31 4.91 9.06 -39.29 -0.36 4.55 16 27 H 0.33 5.82 7.32 -39.29 -0.29 5.53 16 28 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 29 H 0.13 1.96 6.63 -52.48 -0.35 1.61 16 30 H 0.13 1.36 7.64 -52.48 -0.40 0.96 16 LS Contribution 268.09 15.07 4.04 4.04 Total: -1.00 -30.92 268.09 -8.38 -39.30 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -3.10 Total: 7.02 kcal Atomic # 6 Polarization: -14.58 SS G_CDS: -3.31 Total: -17.90 kcal Atomic # 7 Polarization: -49.58 SS G_CDS: 1.14 Total: -48.44 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -4.58 Total: 16.07 kcal Atomic # 16 Polarization: 2.47 SS G_CDS: -2.56 Total: -0.09 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -30.92 -8.38 -39.30 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261027367.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.100 kcal (2) G-P(sol) polarization free energy of solvation -30.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds