Wall clock time and date at job start Mon Mar 30 2020 05:58:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.28734 * 121.08097 * 2 1 4 4 S 1.69386 * 108.98289 * 179.97438 * 3 2 1 5 5 C 1.76513 * 96.12284 * 359.97438 * 4 3 2 6 6 C 1.38784 * 133.56010 * 180.02562 * 5 4 3 7 7 C 1.36721 * 119.75617 * 179.97438 * 6 5 4 8 8 C 1.50697 * 119.92132 * 180.02562 * 7 6 5 9 9 H 1.08995 * 109.47187 * 340.00333 * 8 7 6 10 10 N 1.46894 * 109.47282 * 219.99899 * 8 7 6 11 11 C 1.50703 * 109.47067 * 99.99830 * 8 7 6 12 12 H 1.07998 * 119.99656 * 34.91278 * 11 8 7 13 13 C 1.37873 * 119.99925 * 214.91151 * 11 8 7 14 14 N 1.31520 * 120.00041 * 184.79796 * 13 11 8 15 15 Si 1.86799 * 120.00475 * 4.79396 * 13 11 8 16 16 H 1.48506 * 109.46844 * 84.87401 * 15 13 11 17 17 H 1.48496 * 109.47485 * 204.87596 * 15 13 11 18 18 H 1.48501 * 109.46912 * 324.88150 * 15 13 11 19 19 C 1.38966 * 120.15276 * 0.27332 * 7 6 5 20 20 C 1.36041 * 121.15679 * 359.47067 * 19 7 6 21 21 C 1.40808 * 105.51446 * 359.97438 * 5 4 3 22 22 H 1.09004 * 109.46832 * 89.98080 * 1 2 3 23 23 H 1.09006 * 109.46766 * 209.97363 * 1 2 3 24 24 H 1.08996 * 109.47451 * 329.97325 * 1 2 3 25 25 H 1.08002 * 120.12350 * 359.97438 * 6 5 4 26 26 H 1.00900 * 111.00573 * 173.80546 * 10 8 7 27 27 H 1.00909 * 110.99753 * 297.76313 * 10 8 7 28 28 H 0.96995 * 120.00329 * 180.02562 * 14 13 11 29 29 H 1.08004 * 119.42147 * 179.72864 * 19 7 6 30 30 H 1.08005 * 119.89378 * 180.25450 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1716 1.1025 0.0000 4 16 3.8279 0.7475 0.0007 5 6 3.6441 -1.0080 0.0018 6 6 4.5448 -2.0639 0.0033 7 6 4.0821 -3.3505 0.0044 8 6 5.0568 -4.4998 0.0065 9 1 6.0286 -4.1527 -0.3445 10 7 4.5651 -5.5605 -0.8829 11 6 5.1924 -5.0408 1.4065 12 1 4.3373 -5.0527 2.0660 13 6 6.4082 -5.5207 1.8453 14 7 6.5052 -6.0790 3.0322 15 14 7.9176 -5.3781 0.7542 16 1 8.5368 -4.0409 0.9383 17 1 8.8966 -6.4319 1.1232 18 1 7.5194 -5.5478 -0.6663 19 6 2.7152 -3.6007 -0.0017 20 6 1.8132 -2.5823 0.0020 21 6 2.2555 -1.2414 0.0022 22 1 -0.3633 0.0003 -1.0277 23 1 -0.3633 -0.8903 0.5135 24 1 -0.3634 0.8897 0.5142 25 1 5.6073 -1.8700 0.0035 26 1 5.2472 -6.2979 -0.9779 27 1 3.6819 -5.9244 -0.5577 28 1 7.3605 -6.4162 3.3411 29 1 2.3627 -4.6216 -0.0052 30 1 0.7553 -2.8002 0.0014 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261027369.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:58:18 Heat of formation + Delta-G solvation = 39.424932 kcal Electronic energy + Delta-G solvation = -15204.293543 eV Core-core repulsion = 12704.098472 eV Total energy + Delta-G solvation = -2500.195072 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.068 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.68832 -37.12874 -34.41877 -32.02521 -31.03608 -29.51973 -29.28093 -26.37740 -23.52872 -22.50152 -20.77360 -19.67452 -17.92022 -17.31081 -15.72337 -15.44548 -15.04441 -14.67183 -14.48900 -13.70840 -13.49461 -13.21839 -12.85994 -12.79052 -12.45957 -12.00803 -11.98058 -11.53343 -11.27779 -11.13927 -10.78423 -10.47043 -10.25671 -10.03580 -9.70559 -9.45802 -8.87986 -8.37694 -7.68364 -7.47593 -6.34668 -4.39632 0.86627 1.61858 1.71394 2.08191 2.43432 3.12106 3.21271 3.22537 4.07082 4.17447 4.51101 4.82425 4.99952 5.21188 5.29802 5.37877 5.45110 5.61792 5.76650 5.84111 5.96859 6.03593 6.26564 6.37609 6.45535 6.73371 6.85619 7.10200 7.26221 7.33661 8.07772 8.17784 8.42060 8.70514 9.25071 10.77264 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.032654 B = 0.006402 C = 0.005874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.263942 B = 4372.701050 C = 4765.512240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.161 3.839 3 N -0.460 5.460 4 S 0.150 5.850 5 C -0.115 4.115 6 C -0.097 4.097 7 C 0.027 3.973 8 C 0.205 3.795 9 H 0.055 0.945 10 N -0.852 5.852 11 C -0.548 4.548 12 H 0.077 0.923 13 C 0.080 3.920 14 N -0.884 5.884 15 Si 0.872 3.128 16 H -0.272 1.272 17 H -0.285 1.285 18 H -0.259 1.259 19 C -0.107 4.107 20 C -0.055 4.055 21 C -0.162 4.162 22 H 0.084 0.916 23 H 0.082 0.918 24 H 0.078 0.922 25 H 0.127 0.873 26 H 0.332 0.668 27 H 0.328 0.672 28 H 0.268 0.732 29 H 0.130 0.870 30 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.333 7.052 -6.666 12.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.028 4.028 3 N -0.272 5.272 4 S 0.305 5.695 5 C -0.235 4.235 6 C -0.121 4.121 7 C 0.022 3.978 8 C 0.095 3.905 9 H 0.073 0.927 10 N -0.380 5.380 11 C -0.588 4.588 12 H 0.095 0.905 13 C -0.125 4.125 14 N -0.520 5.520 15 Si 0.699 3.301 16 H -0.197 1.197 17 H -0.211 1.211 18 H -0.184 1.184 19 C -0.127 4.127 20 C -0.077 4.077 21 C -0.173 4.173 22 H 0.102 0.898 23 H 0.101 0.899 24 H 0.097 0.903 25 H 0.145 0.855 26 H 0.144 0.856 27 H 0.139 0.861 28 H 0.078 0.922 29 H 0.148 0.852 30 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -7.345 9.771 -7.099 14.136 hybrid contribution 0.368 -2.151 0.627 2.270 sum -6.977 7.620 -6.472 12.192 Atomic orbital electron populations 1.20617 0.86753 1.03921 1.03559 1.22512 0.98079 0.87418 0.94836 1.75687 1.01519 1.26405 1.23601 1.84644 1.08045 0.97739 1.79120 1.23285 0.96674 0.98535 1.04974 1.19775 0.98556 0.90182 1.03576 1.20109 0.94759 0.94338 0.88621 1.18501 0.92174 0.87446 0.92337 0.92669 1.59610 1.07998 1.16043 1.54319 1.21550 0.98167 1.41171 0.97877 0.90514 1.25090 0.98732 0.93833 0.94891 1.69892 1.25913 1.37787 1.18440 0.86915 0.82985 0.78608 0.81632 1.19741 1.21110 1.18383 1.20592 0.92731 0.99211 1.00168 1.20544 0.99585 0.89495 0.98102 1.20000 0.91418 0.94517 1.11329 0.89770 0.89878 0.90270 0.85478 0.85618 0.86077 0.92166 0.85235 0.85648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.88 10.16 36.01 0.37 -0.51 16 2 C 0.16 2.40 6.88 -81.23 -0.56 1.84 16 3 N -0.46 -7.59 11.84 34.00 0.40 -7.19 16 4 S 0.15 2.52 23.86 -107.50 -2.56 -0.05 16 5 C -0.11 -2.08 6.71 -38.41 -0.26 -2.34 16 6 C -0.10 -1.87 9.63 -39.93 -0.38 -2.25 16 7 C 0.03 0.54 4.91 -104.90 -0.52 0.02 16 8 C 0.20 4.43 2.62 -70.02 -0.18 4.25 16 9 H 0.06 1.23 5.15 -51.93 -0.27 0.96 16 10 N -0.85 -16.41 9.01 -6.66 -0.06 -16.47 16 11 C -0.55 -14.04 9.11 -34.44 -0.31 -14.36 16 12 H 0.08 2.18 8.06 -52.49 -0.42 1.75 16 13 C 0.08 2.12 5.47 -17.82 -0.10 2.02 16 14 N -0.88 -25.31 13.96 55.43 0.77 -24.53 16 15 Si 0.87 19.79 26.99 -169.99 -4.59 15.20 16 16 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 17 H -0.29 -6.51 7.11 56.52 0.40 -6.10 16 18 H -0.26 -5.57 6.82 56.52 0.39 -5.18 16 19 C -0.11 -1.85 9.19 -40.10 -0.37 -2.22 16 20 C -0.06 -0.83 9.72 -39.25 -0.38 -1.22 16 21 C -0.16 -2.67 6.04 -105.14 -0.64 -3.31 16 22 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.08 0.70 7.54 -51.93 -0.39 0.31 16 24 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.13 2.34 8.02 -52.49 -0.42 1.92 16 26 H 0.33 6.39 9.07 -39.29 -0.36 6.03 16 27 H 0.33 5.86 7.39 -39.29 -0.29 5.57 16 28 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 29 H 0.13 2.05 6.67 -52.48 -0.35 1.70 16 30 H 0.13 1.43 7.64 -52.48 -0.40 1.03 16 LS Contribution 271.26 15.07 4.09 4.09 Total: -1.00 -29.11 271.26 -8.18 -37.28 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -2.90 Total: 9.73 kcal Atomic # 6 Polarization: -14.73 SS G_CDS: -3.33 Total: -18.06 kcal Atomic # 7 Polarization: -49.31 SS G_CDS: 1.12 Total: -48.19 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -4.59 Total: 15.20 kcal Atomic # 16 Polarization: 2.52 SS G_CDS: -2.56 Total: -0.05 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -29.11 -8.18 -37.28 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261027369.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.708 kcal (2) G-P(sol) polarization free energy of solvation -29.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds