Wall clock time and date at job start Mon Mar 30 2020 05:58:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.28734 * 121.08097 * 2 1 4 4 S 1.69386 * 108.98289 * 179.97438 * 3 2 1 5 5 C 1.76513 * 96.12284 * 359.97438 * 4 3 2 6 6 C 1.38784 * 133.56010 * 180.02562 * 5 4 3 7 7 C 1.36721 * 119.75617 * 179.97438 * 6 5 4 8 8 C 1.50697 * 119.92132 * 180.02562 * 7 6 5 9 9 H 1.08995 * 109.47187 * 340.00333 * 8 7 6 10 10 N 1.46894 * 109.47282 * 219.99899 * 8 7 6 11 11 C 1.50703 * 109.47067 * 99.99830 * 8 7 6 12 12 H 1.07998 * 119.99656 * 34.91278 * 11 8 7 13 13 C 1.37873 * 119.99925 * 214.91151 * 11 8 7 14 14 N 1.31520 * 120.00041 * 184.79796 * 13 11 8 15 15 Si 1.86799 * 120.00475 * 4.79396 * 13 11 8 16 16 H 1.48506 * 109.46844 * 84.87401 * 15 13 11 17 17 H 1.48496 * 109.47485 * 204.87596 * 15 13 11 18 18 H 1.48501 * 109.46912 * 324.88150 * 15 13 11 19 19 C 1.38966 * 120.15276 * 0.27332 * 7 6 5 20 20 C 1.36041 * 121.15679 * 359.47067 * 19 7 6 21 21 C 1.40808 * 105.51446 * 359.97438 * 5 4 3 22 22 H 1.09004 * 109.46832 * 89.98080 * 1 2 3 23 23 H 1.09006 * 109.46766 * 209.97363 * 1 2 3 24 24 H 1.08996 * 109.47451 * 329.97325 * 1 2 3 25 25 H 1.08002 * 120.12350 * 359.97438 * 6 5 4 26 26 H 1.00900 * 111.00573 * 173.80546 * 10 8 7 27 27 H 1.00909 * 110.99753 * 297.76313 * 10 8 7 28 28 H 0.96995 * 120.00329 * 180.02562 * 14 13 11 29 29 H 1.08004 * 119.42147 * 179.72864 * 19 7 6 30 30 H 1.08005 * 119.89378 * 180.25450 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1716 1.1025 0.0000 4 16 3.8279 0.7475 0.0007 5 6 3.6441 -1.0080 0.0018 6 6 4.5448 -2.0639 0.0033 7 6 4.0821 -3.3505 0.0044 8 6 5.0568 -4.4998 0.0065 9 1 6.0286 -4.1527 -0.3445 10 7 4.5651 -5.5605 -0.8829 11 6 5.1924 -5.0408 1.4065 12 1 4.3373 -5.0527 2.0660 13 6 6.4082 -5.5207 1.8453 14 7 6.5052 -6.0790 3.0322 15 14 7.9176 -5.3781 0.7542 16 1 8.5368 -4.0409 0.9383 17 1 8.8966 -6.4319 1.1232 18 1 7.5194 -5.5478 -0.6663 19 6 2.7152 -3.6007 -0.0017 20 6 1.8132 -2.5823 0.0020 21 6 2.2555 -1.2414 0.0022 22 1 -0.3633 0.0003 -1.0277 23 1 -0.3633 -0.8903 0.5135 24 1 -0.3634 0.8897 0.5142 25 1 5.6073 -1.8700 0.0035 26 1 5.2472 -6.2979 -0.9779 27 1 3.6819 -5.9244 -0.5577 28 1 7.3605 -6.4162 3.3411 29 1 2.3627 -4.6216 -0.0052 30 1 0.7553 -2.8002 0.0014 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261027369.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:58:18 Heat of formation + Delta-G solvation = 19.828565 kcal Electronic energy + Delta-G solvation = -15205.143306 eV Core-core repulsion = 12704.098472 eV Total energy + Delta-G solvation = -2501.044834 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.068 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.00521 -38.48812 -36.04176 -33.94360 -32.32391 -30.92354 -30.24866 -28.20833 -25.06709 -23.83605 -22.24515 -20.95994 -19.31167 -19.18116 -17.29495 -16.84499 -16.40907 -16.29673 -15.77163 -14.91406 -14.87888 -14.72474 -14.60553 -14.04612 -13.63396 -13.43060 -13.32148 -12.97603 -12.69630 -12.67266 -12.40162 -11.89679 -11.78539 -11.51023 -11.47883 -10.87621 -10.74420 -9.83373 -9.27339 -8.83826 -8.39078 -6.46988 -0.43619 0.27672 0.40301 0.85007 1.17499 1.31800 1.35000 1.43513 2.25859 2.69378 3.00367 3.32321 3.59128 3.84507 4.16209 4.37715 4.38867 4.44801 4.47605 4.58739 4.75992 4.86097 4.95313 5.02449 5.22787 5.32719 5.41274 5.65431 5.70821 5.87413 6.11416 6.48521 6.60480 6.86534 7.21890 8.76486 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.032654 B = 0.006402 C = 0.005874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.263942 B = 4372.701050 C = 4765.512240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.169 3.831 3 N -0.475 5.475 4 S 0.137 5.863 5 C -0.135 4.135 6 C -0.113 4.113 7 C 0.002 3.998 8 C 0.212 3.788 9 H 0.049 0.951 10 N -0.839 5.839 11 C -0.543 4.543 12 H 0.038 0.962 13 C 0.025 3.975 14 N -0.936 5.936 15 Si 0.934 3.066 16 H -0.272 1.272 17 H -0.286 1.286 18 H -0.238 1.238 19 C -0.118 4.118 20 C -0.036 4.036 21 C -0.166 4.166 22 H 0.107 0.893 23 H 0.106 0.894 24 H 0.088 0.912 25 H 0.123 0.877 26 H 0.334 0.666 27 H 0.337 0.663 28 H 0.268 0.732 29 H 0.142 0.858 30 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.209 7.577 -8.211 15.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.021 4.021 3 N -0.287 5.287 4 S 0.291 5.709 5 C -0.254 4.254 6 C -0.137 4.137 7 C -0.003 4.003 8 C 0.101 3.899 9 H 0.067 0.933 10 N -0.367 5.367 11 C -0.583 4.583 12 H 0.056 0.944 13 C -0.175 4.175 14 N -0.574 5.574 15 Si 0.758 3.242 16 H -0.197 1.197 17 H -0.212 1.212 18 H -0.161 1.161 19 C -0.138 4.138 20 C -0.058 4.058 21 C -0.177 4.177 22 H 0.125 0.875 23 H 0.125 0.875 24 H 0.106 0.894 25 H 0.140 0.860 26 H 0.145 0.855 27 H 0.149 0.851 28 H 0.078 0.922 29 H 0.160 0.840 30 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -9.239 10.302 -8.668 16.329 hybrid contribution 0.770 -2.247 1.119 2.626 sum -8.468 8.056 -7.549 13.914 Atomic orbital electron populations 1.20870 0.82895 1.05584 1.05486 1.23153 1.00262 0.86138 0.92526 1.75798 1.00886 1.27045 1.25009 1.84629 1.09369 0.97152 1.79705 1.23448 0.97648 0.98895 1.05439 1.19799 0.98777 0.90622 1.04503 1.20046 0.95777 0.93745 0.90778 1.18312 0.92932 0.88585 0.90035 0.93321 1.59528 1.08377 1.15755 1.53011 1.21742 0.96710 1.40614 0.99191 0.94412 1.25886 1.01869 0.93637 0.96093 1.70035 1.26676 1.40014 1.20725 0.85928 0.79112 0.78285 0.80913 1.19719 1.21199 1.16074 1.20784 0.91963 1.00606 1.00495 1.20967 1.01563 0.88100 0.95176 1.20436 0.90920 0.95869 1.10467 0.87455 0.87504 0.89366 0.85951 0.85456 0.85056 0.92246 0.84025 0.80920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.36 10.16 71.24 0.72 -0.64 16 2 C 0.17 4.52 6.88 44.73 0.31 4.82 16 3 N -0.47 -14.79 11.84 -46.34 -0.55 -15.34 16 4 S 0.14 4.53 23.86 -56.49 -1.35 3.18 16 5 C -0.13 -4.78 6.71 23.03 0.15 -4.62 16 6 C -0.11 -4.36 9.63 22.04 0.21 -4.15 16 7 C 0.00 0.06 4.91 -20.05 -0.10 -0.03 16 8 C 0.21 9.09 2.62 43.42 0.11 9.20 16 9 H 0.05 2.14 5.15 -2.39 -0.01 2.13 16 10 N -0.84 -31.21 9.01 -174.97 -1.58 -32.78 16 11 C -0.54 -28.35 9.11 25.60 0.23 -28.12 16 12 H 0.04 2.22 8.06 -2.91 -0.02 2.19 16 13 C 0.03 1.37 5.47 84.65 0.46 1.84 16 14 N -0.94 -55.19 13.96 21.45 0.30 -54.89 16 15 Si 0.93 41.12 26.99 68.60 1.85 42.97 16 16 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 17 H -0.29 -12.54 7.11 99.48 0.71 -11.84 16 18 H -0.24 -9.51 6.82 99.48 0.68 -8.83 16 19 C -0.12 -3.86 9.19 21.93 0.20 -3.66 16 20 C -0.04 -0.98 9.72 22.49 0.22 -0.76 16 21 C -0.17 -5.06 6.04 -20.20 -0.12 -5.18 16 22 H 0.11 1.28 8.14 -2.38 -0.02 1.26 16 23 H 0.11 1.21 7.54 -2.38 -0.02 1.19 16 24 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 25 H 0.12 4.63 8.02 -2.91 -0.02 4.61 16 26 H 0.33 12.31 9.07 -89.69 -0.81 11.50 16 27 H 0.34 11.58 7.39 -89.69 -0.66 10.92 16 28 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 29 H 0.14 4.18 6.67 -2.91 -0.02 4.16 16 30 H 0.17 2.95 7.64 -2.91 -0.02 2.93 16 Total: -1.00 -64.52 271.26 0.77 -63.75 By element: Atomic # 1 Polarization: 24.72 SS G_CDS: -0.31 Total: 24.41 kcal Atomic # 6 Polarization: -33.71 SS G_CDS: 2.41 Total: -31.30 kcal Atomic # 7 Polarization: -101.19 SS G_CDS: -1.83 Total: -103.01 kcal Atomic # 14 Polarization: 41.12 SS G_CDS: 1.85 Total: 42.97 kcal Atomic # 16 Polarization: 4.53 SS G_CDS: -1.35 Total: 3.18 kcal Total: -64.52 0.77 -63.75 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261027369.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.575 kcal (2) G-P(sol) polarization free energy of solvation -64.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds