Wall clock time and date at job start Mon Mar 30 2020 05:53:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31504 * 1 3 3 Si 1.86804 * 119.99998 * 2 1 4 4 H 1.48500 * 109.47086 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47157 * 119.99749 * 3 2 1 6 6 H 1.48504 * 109.46961 * 239.99472 * 3 2 1 7 7 C 1.37879 * 120.00307 * 180.27185 * 2 1 3 8 8 H 1.07999 * 120.00368 * 174.62405 * 7 2 1 9 9 C 1.50700 * 119.99765 * 354.62385 * 7 2 1 10 10 H 1.09004 * 109.46970 * 328.66184 * 9 7 2 11 11 C 1.53004 * 109.47218 * 208.66798 * 9 7 2 12 12 N 1.46896 * 109.47488 * 65.79506 * 11 9 7 13 13 C 1.50700 * 109.47324 * 88.66080 * 9 7 2 14 14 C 1.37700 * 120.01849 * 59.72470 * 13 9 7 15 15 C 1.38749 * 120.06178 * 179.73069 * 14 13 9 16 16 C 1.36216 * 120.77805 * 0.56736 * 15 14 13 17 17 C 1.40928 * 120.42592 * 359.70998 * 16 15 14 18 18 N 1.34666 * 129.69082 * 180.02562 * 17 16 15 19 19 C 1.27926 * 117.84305 * 179.97438 * 18 17 16 20 20 S 1.70654 * 111.53339 * 359.97438 * 19 18 17 21 21 C 1.39291 * 120.02540 * 239.99898 * 13 9 7 22 22 H 0.97002 * 119.99995 * 181.21035 * 1 2 3 23 23 H 1.09000 * 109.46985 * 185.79854 * 11 9 7 24 24 H 1.08996 * 109.46686 * 305.79370 * 11 9 7 25 25 H 1.00892 * 111.00044 * 173.61745 * 12 11 9 26 26 H 1.00906 * 110.99640 * 297.57146 * 12 11 9 27 27 H 1.07997 * 119.97050 * 0.02845 * 14 13 9 28 28 H 1.08005 * 119.60633 * 180.29828 * 15 14 13 29 29 H 1.08006 * 119.78247 * 179.72441 * 16 15 14 30 30 H 1.08004 * 124.23378 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 -0.0006 5 1 3.1028 1.6965 1.2125 6 1 3.1029 1.6963 -1.2125 7 6 2.0045 -1.1940 -0.0057 8 1 3.0809 -1.1957 -0.0933 9 6 1.2560 -2.4968 0.1104 10 1 0.3604 -2.3487 0.7139 11 6 2.1525 -3.5425 0.7766 12 7 2.4226 -3.1436 2.1643 13 6 0.8625 -2.9743 -1.2637 14 6 1.8314 -3.2254 -2.2094 15 6 1.4705 -3.6704 -3.4730 16 6 0.1609 -3.8537 -3.7998 17 6 -0.8529 -3.5994 -2.8545 18 7 -2.1892 -3.7162 -2.9739 19 6 -2.9079 -3.4217 -1.9575 20 16 -1.9495 -2.9295 -0.6340 21 6 -0.4818 -3.1566 -1.5798 22 1 -0.4850 -0.8399 0.0177 23 1 1.6506 -4.5101 0.7677 24 1 3.0927 -3.6160 0.2301 25 1 2.9251 -3.8665 2.6570 26 1 2.9230 -2.2680 2.1979 27 1 2.8735 -3.0804 -1.9658 28 1 2.2368 -3.8697 -4.2076 29 1 -0.1022 -4.1965 -4.7897 30 1 -3.9863 -3.4776 -1.9391 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261032580.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:25 Heat of formation + Delta-G solvation = 44.399436 kcal Electronic energy + Delta-G solvation = -15770.144677 eV Core-core repulsion = 13270.165316 eV Total energy + Delta-G solvation = -2499.979361 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.068 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.78517 -37.00013 -34.93380 -32.51862 -30.87311 -29.28182 -27.17376 -24.37587 -24.08750 -22.26166 -21.36056 -19.82943 -17.63874 -16.77412 -15.72836 -15.54732 -15.01864 -14.86222 -14.15351 -13.89089 -13.72690 -13.09367 -12.91335 -12.30844 -12.28584 -11.67053 -11.33404 -11.23889 -10.90191 -10.81870 -10.25151 -10.11567 -9.89787 -9.53202 -9.10546 -8.64840 -8.47062 -8.10703 -7.91737 -7.24462 -6.44897 -4.18624 1.02931 1.84638 1.92406 2.39962 2.98243 3.38524 3.39327 3.58133 4.33279 4.46703 4.49703 5.10753 5.33378 5.47515 5.52768 5.65457 5.89118 5.91220 6.08380 6.21475 6.35902 6.48764 6.61890 6.84695 6.88125 7.02508 7.37106 7.44074 7.92365 7.99841 8.08899 8.23254 8.29823 8.77033 9.53824 10.95532 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.020070 B = 0.009474 C = 0.008955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.770718 B = 2954.620890 C = 3125.857147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.026 3.974 3 Si 1.066 2.934 4 H -0.282 1.282 5 H -0.286 1.286 6 H -0.289 1.289 7 C -0.589 4.589 8 H 0.051 0.949 9 C 0.055 3.945 10 H 0.052 0.948 11 C 0.086 3.914 12 N -0.843 5.843 13 C 0.016 3.984 14 C -0.107 4.107 15 C -0.105 4.105 16 C -0.099 4.099 17 C 0.069 3.931 18 N -0.474 5.474 19 C 0.035 3.965 20 S 0.118 5.882 21 C -0.175 4.175 22 H 0.277 0.723 23 H 0.043 0.957 24 H 0.015 0.985 25 H 0.321 0.679 26 H 0.350 0.650 27 H 0.126 0.874 28 H 0.123 0.877 29 H 0.121 0.879 30 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.493 -6.707 -1.980 7.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.181 4.181 3 Si 0.894 3.106 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.215 1.215 7 C -0.626 4.626 8 H 0.070 0.930 9 C 0.036 3.964 10 H 0.070 0.930 11 C -0.045 4.045 12 N -0.373 5.373 13 C 0.011 3.989 14 C -0.130 4.130 15 C -0.125 4.125 16 C -0.120 4.120 17 C -0.051 4.051 18 N -0.188 5.188 19 C -0.269 4.269 20 S 0.372 5.628 21 C -0.293 4.293 22 H 0.090 0.910 23 H 0.061 0.939 24 H 0.033 0.967 25 H 0.131 0.869 26 H 0.164 0.836 27 H 0.144 0.856 28 H 0.141 0.859 29 H 0.139 0.861 30 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -1.145 -4.892 -1.397 5.215 hybrid contribution 1.682 -1.773 -1.138 2.696 sum 0.537 -6.665 -2.535 7.151 Atomic orbital electron populations 1.70797 1.06903 1.31548 1.43953 1.25830 0.96522 1.02644 0.93092 0.83585 0.75021 0.75527 0.76497 1.20701 1.21249 1.21528 1.21692 0.94043 0.90440 1.56440 0.93033 1.18189 0.97142 0.94145 0.86949 0.92951 1.21654 0.97434 0.96977 0.88475 1.58581 1.55809 1.07705 1.15163 1.20276 0.88389 0.90164 1.00108 1.20855 0.99520 1.00149 0.92452 1.20635 0.95280 0.99670 0.96925 1.20045 0.90778 1.03371 0.97846 1.19186 0.89007 1.03425 0.93452 1.66203 1.04523 1.18220 1.29835 1.28003 1.04594 1.01183 0.93083 1.84134 0.96499 1.65879 1.16298 1.23731 0.98857 1.09300 0.97446 0.90976 0.93875 0.96676 0.86867 0.83591 0.85576 0.85913 0.86082 0.78906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.08 13.62 55.43 0.75 -25.33 16 2 C 0.03 0.71 5.45 -17.82 -0.10 0.62 16 3 Si 1.07 24.27 29.91 -169.99 -5.08 19.18 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.16 7.11 56.52 0.40 -5.76 16 6 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.59 -15.16 7.10 -34.44 -0.24 -15.41 16 8 H 0.05 1.30 7.82 -52.49 -0.41 0.89 16 9 C 0.06 1.31 1.84 -92.92 -0.17 1.14 16 10 H 0.05 1.38 5.78 -51.93 -0.30 1.08 16 11 C 0.09 1.74 5.93 -3.82 -0.02 1.71 16 12 N -0.84 -15.92 9.57 -10.37 -0.10 -16.01 16 13 C 0.02 0.36 4.74 -104.43 -0.49 -0.14 16 14 C -0.11 -2.15 8.86 -39.59 -0.35 -2.51 16 15 C -0.10 -1.84 9.94 -40.12 -0.40 -2.23 16 16 C -0.10 -1.83 10.05 -39.29 -0.39 -2.23 16 17 C 0.07 1.45 7.00 -84.96 -0.59 0.86 16 18 N -0.47 -9.38 10.57 -12.96 -0.14 -9.51 16 19 C 0.04 0.61 12.10 51.14 0.62 1.23 16 20 S 0.12 2.32 20.71 -107.50 -2.23 0.10 16 21 C -0.17 -3.88 6.11 -38.55 -0.24 -4.12 16 22 H 0.28 7.77 4.77 -40.82 -0.19 7.57 16 23 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 24 H 0.02 0.29 7.61 -51.93 -0.40 -0.10 16 25 H 0.32 4.93 9.08 -39.30 -0.36 4.57 16 26 H 0.35 6.80 8.28 -39.29 -0.33 6.47 16 27 H 0.13 2.39 7.65 -52.49 -0.40 1.99 16 28 H 0.12 1.69 8.06 -52.48 -0.42 1.27 16 29 H 0.12 1.92 8.06 -52.48 -0.42 1.50 16 30 H 0.19 2.42 8.06 -52.48 -0.42 2.00 16 LS Contribution 268.11 15.07 4.04 4.04 Total: -1.00 -30.81 268.11 -8.01 -38.82 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -2.87 Total: 9.79 kcal Atomic # 6 Polarization: -18.69 SS G_CDS: -2.39 Total: -21.08 kcal Atomic # 7 Polarization: -51.37 SS G_CDS: 0.52 Total: -50.85 kcal Atomic # 14 Polarization: 24.27 SS G_CDS: -5.08 Total: 19.18 kcal Atomic # 16 Polarization: 2.32 SS G_CDS: -2.23 Total: 0.10 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -30.81 -8.01 -38.82 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261032580.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.215 kcal (2) G-P(sol) polarization free energy of solvation -30.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds