Wall clock time and date at job start Mon Mar 30 2020 05:53:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31504 * 1 3 3 Si 1.86804 * 119.99998 * 2 1 4 4 H 1.48500 * 109.47086 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47157 * 119.99749 * 3 2 1 6 6 H 1.48504 * 109.46961 * 239.99472 * 3 2 1 7 7 C 1.37879 * 120.00307 * 180.27185 * 2 1 3 8 8 H 1.07999 * 120.00368 * 174.62405 * 7 2 1 9 9 C 1.50700 * 119.99765 * 354.62385 * 7 2 1 10 10 H 1.09004 * 109.46970 * 328.66184 * 9 7 2 11 11 C 1.53004 * 109.47218 * 208.66798 * 9 7 2 12 12 N 1.46896 * 109.47488 * 65.79506 * 11 9 7 13 13 C 1.50700 * 109.47324 * 88.66080 * 9 7 2 14 14 C 1.37700 * 120.01849 * 59.72470 * 13 9 7 15 15 C 1.38749 * 120.06178 * 179.73069 * 14 13 9 16 16 C 1.36216 * 120.77805 * 0.56736 * 15 14 13 17 17 C 1.40928 * 120.42592 * 359.70998 * 16 15 14 18 18 N 1.34666 * 129.69082 * 180.02562 * 17 16 15 19 19 C 1.27926 * 117.84305 * 179.97438 * 18 17 16 20 20 S 1.70654 * 111.53339 * 359.97438 * 19 18 17 21 21 C 1.39291 * 120.02540 * 239.99898 * 13 9 7 22 22 H 0.97002 * 119.99995 * 181.21035 * 1 2 3 23 23 H 1.09000 * 109.46985 * 185.79854 * 11 9 7 24 24 H 1.08996 * 109.46686 * 305.79370 * 11 9 7 25 25 H 1.00892 * 111.00044 * 173.61745 * 12 11 9 26 26 H 1.00906 * 110.99640 * 297.57146 * 12 11 9 27 27 H 1.07997 * 119.97050 * 0.02845 * 14 13 9 28 28 H 1.08005 * 119.60633 * 180.29828 * 15 14 13 29 29 H 1.08006 * 119.78247 * 179.72441 * 16 15 14 30 30 H 1.08004 * 124.23378 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 -0.0006 5 1 3.1028 1.6965 1.2125 6 1 3.1029 1.6963 -1.2125 7 6 2.0045 -1.1940 -0.0057 8 1 3.0809 -1.1957 -0.0933 9 6 1.2560 -2.4968 0.1104 10 1 0.3604 -2.3487 0.7139 11 6 2.1525 -3.5425 0.7766 12 7 2.4226 -3.1436 2.1643 13 6 0.8625 -2.9743 -1.2637 14 6 1.8314 -3.2254 -2.2094 15 6 1.4705 -3.6704 -3.4730 16 6 0.1609 -3.8537 -3.7998 17 6 -0.8529 -3.5994 -2.8545 18 7 -2.1892 -3.7162 -2.9739 19 6 -2.9079 -3.4217 -1.9575 20 16 -1.9495 -2.9295 -0.6340 21 6 -0.4818 -3.1566 -1.5798 22 1 -0.4850 -0.8399 0.0177 23 1 1.6506 -4.5101 0.7677 24 1 3.0927 -3.6160 0.2301 25 1 2.9251 -3.8665 2.6570 26 1 2.9230 -2.2680 2.1979 27 1 2.8735 -3.0804 -1.9658 28 1 2.2368 -3.8697 -4.2076 29 1 -0.1022 -4.1965 -4.7897 30 1 -3.9863 -3.4776 -1.9391 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261032580.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:25 Heat of formation + Delta-G solvation = 23.291663 kcal Electronic energy + Delta-G solvation = -15771.059979 eV Core-core repulsion = 13270.165316 eV Total energy + Delta-G solvation = -2500.894663 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.068 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.28810 -38.58977 -36.53665 -34.34351 -32.49312 -30.78259 -28.86476 -26.00938 -25.84166 -23.83030 -22.86724 -21.51619 -19.26513 -18.52159 -17.29341 -17.09456 -16.56898 -16.34531 -15.68216 -15.63142 -15.34588 -14.71042 -14.46668 -14.09815 -13.81636 -13.23370 -12.90673 -12.77901 -12.59429 -12.54101 -12.02975 -11.74259 -11.63686 -11.12840 -10.63774 -10.54931 -10.38215 -9.61417 -9.45715 -8.80958 -8.51382 -6.24694 -0.44615 0.33749 0.43707 0.90647 1.47154 1.55065 1.61977 1.79202 2.60355 2.82980 3.13881 3.25013 3.76491 3.97710 4.09141 4.27158 4.35910 4.39420 4.57031 4.61541 4.85245 4.93165 5.05694 5.17798 5.35291 5.46238 5.71314 5.91735 6.08162 6.29704 6.39611 6.59384 6.70317 6.84539 7.55855 8.92355 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.020070 B = 0.009474 C = 0.008955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.770718 B = 2954.620890 C = 3125.857147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.025 4.025 3 Si 1.106 2.894 4 H -0.294 1.294 5 H -0.267 1.267 6 H -0.276 1.276 7 C -0.584 4.584 8 H 0.053 0.947 9 C 0.056 3.944 10 H 0.018 0.982 11 C 0.093 3.907 12 N -0.850 5.850 13 C -0.014 4.014 14 C -0.115 4.115 15 C -0.093 4.093 16 C -0.100 4.100 17 C 0.049 3.951 18 N -0.489 5.489 19 C 0.059 3.941 20 S 0.085 5.915 21 C -0.205 4.205 22 H 0.275 0.725 23 H 0.047 0.953 24 H 0.025 0.975 25 H 0.342 0.658 26 H 0.347 0.653 27 H 0.134 0.866 28 H 0.168 0.832 29 H 0.150 0.850 30 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.289 -7.440 -3.257 8.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.225 4.225 3 Si 0.929 3.071 4 H -0.220 1.220 5 H -0.192 1.192 6 H -0.202 1.202 7 C -0.621 4.621 8 H 0.071 0.929 9 C 0.037 3.963 10 H 0.036 0.964 11 C -0.038 4.038 12 N -0.381 5.381 13 C -0.019 4.019 14 C -0.137 4.137 15 C -0.114 4.114 16 C -0.121 4.121 17 C -0.070 4.070 18 N -0.202 5.202 19 C -0.245 4.245 20 S 0.339 5.661 21 C -0.323 4.323 22 H 0.087 0.913 23 H 0.066 0.934 24 H 0.043 0.957 25 H 0.155 0.845 26 H 0.160 0.840 27 H 0.152 0.848 28 H 0.186 0.814 29 H 0.168 0.832 30 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -0.312 -5.663 -2.666 6.267 hybrid contribution 1.394 -1.654 -0.758 2.292 sum 1.082 -7.317 -3.424 8.151 Atomic orbital electron populations 1.70841 1.08042 1.31778 1.47056 1.27002 0.96624 1.05958 0.92932 0.83066 0.74195 0.72074 0.77725 1.21990 1.19185 1.20161 1.21934 0.94122 0.91363 1.54725 0.92880 1.18087 0.96013 0.94439 0.87803 0.96357 1.21519 0.97205 0.96122 0.88993 1.58507 1.56487 1.08381 1.14733 1.20227 0.89398 0.92447 0.99819 1.21098 0.99421 0.99980 0.93202 1.21056 0.96081 0.97630 0.96584 1.20515 0.90666 1.02343 0.98611 1.19691 0.90078 1.03637 0.93614 1.66272 1.04169 1.19427 1.30365 1.28766 1.06193 0.98416 0.91098 1.84199 0.97051 1.66826 1.18033 1.23948 0.99222 1.10608 0.98555 0.91270 0.93438 0.95653 0.84501 0.83958 0.84828 0.81446 0.83196 0.74167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.03 13.62 21.45 0.29 -55.74 16 2 C -0.02 -1.35 5.45 84.66 0.46 -0.89 16 3 Si 1.11 48.97 29.91 68.60 2.05 51.02 16 4 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 5 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 6 H -0.28 -11.50 7.11 99.48 0.71 -10.79 16 7 C -0.58 -30.17 7.10 25.60 0.18 -29.99 16 8 H 0.05 2.65 7.82 -2.91 -0.02 2.63 16 9 C 0.06 2.69 1.84 -12.28 -0.02 2.67 16 10 H 0.02 1.00 5.78 -2.38 -0.01 0.99 16 11 C 0.09 3.72 5.93 86.31 0.51 4.24 16 12 N -0.85 -31.62 9.57 -186.72 -1.79 -33.40 16 13 C -0.01 -0.62 4.74 -19.74 -0.09 -0.71 16 14 C -0.11 -4.46 8.86 22.26 0.20 -4.26 16 15 C -0.09 -3.00 9.94 21.92 0.22 -2.79 16 16 C -0.10 -3.46 10.05 22.46 0.23 -3.23 16 17 C 0.05 2.01 7.00 39.78 0.28 2.29 16 18 N -0.49 -18.59 10.57 -194.77 -2.06 -20.65 16 19 C 0.06 1.97 12.10 130.81 1.58 3.55 16 20 S 0.08 3.40 20.71 -56.49 -1.17 2.23 16 21 C -0.20 -9.15 6.11 22.94 0.14 -9.01 16 22 H 0.27 15.94 4.77 -92.71 -0.44 15.50 16 23 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 24 H 0.03 0.96 7.61 -2.39 -0.02 0.94 16 25 H 0.34 10.08 9.08 -89.70 -0.81 9.26 16 26 H 0.35 13.31 8.28 -89.69 -0.74 12.57 16 27 H 0.13 4.84 7.65 -2.91 -0.02 4.82 16 28 H 0.17 3.82 8.06 -2.91 -0.02 3.79 16 29 H 0.15 4.22 8.06 -2.91 -0.02 4.20 16 30 H 0.24 5.30 8.06 -2.91 -0.02 5.28 16 Total: -1.00 -67.51 268.11 0.97 -66.54 By element: Atomic # 1 Polarization: 28.17 SS G_CDS: -0.04 Total: 28.12 kcal Atomic # 6 Polarization: -41.81 SS G_CDS: 3.68 Total: -38.13 kcal Atomic # 7 Polarization: -106.24 SS G_CDS: -3.55 Total: -109.79 kcal Atomic # 14 Polarization: 48.97 SS G_CDS: 2.05 Total: 51.02 kcal Atomic # 16 Polarization: 3.40 SS G_CDS: -1.17 Total: 2.23 kcal Total: -67.51 0.97 -66.54 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261032580.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.832 kcal (2) G-P(sol) polarization free energy of solvation -67.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds