Wall clock time and date at job start Mon Mar 30 2020 06:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.27927 * 124.23526 * 2 1 4 4 C 1.34668 * 117.85009 * 180.02562 * 3 2 1 5 5 C 1.39953 * 111.79469 * 359.97438 * 4 3 2 6 6 C 1.39293 * 120.26543 * 179.75634 * 5 4 3 7 7 C 1.37699 * 119.95778 * 0.45635 * 6 5 4 8 8 C 1.38751 * 120.05766 * 359.54678 * 7 6 5 9 9 C 1.36210 * 120.78731 * 0.22540 * 8 7 6 10 10 C 1.50693 * 119.79045 * 180.02562 * 9 8 7 11 11 H 1.09007 * 109.47223 * 144.98441 * 10 9 8 12 12 N 1.46899 * 109.47057 * 24.98387 * 10 9 8 13 13 C 1.50702 * 109.47403 * 264.98134 * 10 9 8 14 14 H 1.07996 * 119.99759 * 0.02562 * 13 10 9 15 15 C 1.37876 * 119.99779 * 179.97438 * 13 10 9 16 16 N 1.31511 * 120.00659 * 0.02562 * 15 13 10 17 17 Si 1.86803 * 119.99885 * 179.97438 * 15 13 10 18 18 H 1.48502 * 109.46834 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47240 * 120.00080 * 17 15 13 20 20 H 1.48501 * 109.47369 * 240.00387 * 17 15 13 21 21 S 1.70648 * 124.23432 * 180.02562 * 2 1 3 22 22 H 1.08997 * 109.46633 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.46806 * 299.98029 * 1 2 3 24 24 H 1.08997 * 109.47011 * 59.98145 * 1 2 3 25 25 H 1.08004 * 120.02382 * 180.25646 * 6 5 4 26 26 H 1.07995 * 119.96730 * 179.77447 * 7 6 5 27 27 H 1.08005 * 119.60503 * 180.20826 * 8 7 6 28 28 H 1.00908 * 111.00111 * 176.04435 * 12 10 9 29 29 H 1.00897 * 111.00363 * 299.99603 * 12 10 9 30 30 H 0.96991 * 120.00718 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2267 1.0576 0.0000 4 6 3.5650 0.9078 -0.0005 5 6 3.9369 -0.4414 -0.0004 6 6 5.2833 -0.7985 -0.0060 7 6 6.2538 0.1783 -0.0022 8 6 5.8917 1.5177 -0.0023 9 6 4.5802 1.8854 -0.0015 10 6 4.2123 3.3467 -0.0022 11 1 3.3069 3.4933 -0.5913 12 7 5.3097 4.1277 -0.5885 13 6 3.9702 3.8045 1.4131 14 1 4.0730 3.1071 2.2312 15 6 3.6187 5.1140 1.6634 16 7 3.4940 5.9635 0.6672 17 14 3.3179 5.6813 3.4176 18 1 3.5209 4.5418 4.3480 19 1 4.2686 6.7709 3.7554 20 1 1.9256 6.1822 3.5441 21 16 2.4670 -1.4108 -0.0006 22 1 -0.3632 -1.0277 -0.0005 23 1 -0.3633 0.5135 0.8902 24 1 -0.3633 0.5141 -0.8898 25 1 5.5659 -1.8409 -0.0101 26 1 7.2977 -0.0984 -0.0029 27 1 6.6590 2.2779 -0.0027 28 1 5.0617 5.1032 -0.6596 29 1 6.1609 4.0087 -0.0600 30 1 3.2463 6.8845 0.8433 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261035520.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:05 Heat of formation + Delta-G solvation = 49.547016 kcal Electronic energy + Delta-G solvation = -15488.427183 eV Core-core repulsion = 12988.671037 eV Total energy + Delta-G solvation = -2499.756145 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.068 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.91993 -36.80439 -34.67940 -31.68875 -31.24245 -29.29214 -27.79681 -25.92957 -23.61992 -22.72399 -20.67771 -19.96694 -17.68170 -16.54111 -15.82281 -15.32980 -14.91152 -14.63757 -14.55793 -13.83069 -13.06404 -12.95933 -12.67295 -12.50324 -12.17105 -11.92610 -11.76606 -11.24124 -11.04843 -10.91449 -10.72310 -10.45276 -10.06683 -9.69848 -9.36961 -9.01673 -8.61356 -8.10699 -7.50271 -7.18946 -6.07258 -4.22017 0.94060 1.66791 1.78847 2.10780 2.89246 3.22316 3.30726 3.36002 4.26034 4.36841 4.42890 5.07404 5.17205 5.32064 5.44292 5.55201 5.64045 5.69657 5.93582 6.01253 6.12857 6.40696 6.57682 6.66376 6.92276 7.02406 7.33726 7.72500 7.75974 8.07112 8.23720 8.66828 8.91379 9.08774 9.47565 10.91425 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.021904 B = 0.008322 C = 0.006825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.015743 B = 3363.820894 C = 4101.457104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.074 3.926 3 N -0.431 5.431 4 C 0.081 3.919 5 C -0.171 4.171 6 C -0.110 4.110 7 C -0.092 4.092 8 C -0.119 4.119 9 C 0.035 3.965 10 C 0.241 3.759 11 H 0.060 0.940 12 N -0.851 5.851 13 C -0.531 4.531 14 H 0.053 0.947 15 C 0.067 3.933 16 N -0.893 5.893 17 Si 0.897 3.103 18 H -0.274 1.274 19 H -0.283 1.283 20 H -0.282 1.282 21 S 0.041 5.959 22 H 0.075 0.925 23 H 0.087 0.913 24 H 0.087 0.913 25 H 0.120 0.880 26 H 0.126 0.874 27 H 0.135 0.865 28 H 0.358 0.642 29 H 0.310 0.690 30 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.376 -12.351 -1.345 12.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.212 4.212 3 N -0.143 5.143 4 C -0.038 4.038 5 C -0.289 4.289 6 C -0.133 4.133 7 C -0.113 4.113 8 C -0.140 4.140 9 C 0.032 3.968 10 C 0.131 3.869 11 H 0.077 0.923 12 N -0.382 5.382 13 C -0.571 4.571 14 H 0.071 0.929 15 C -0.135 4.135 16 N -0.533 5.533 17 Si 0.725 3.275 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.208 1.208 21 S 0.294 5.706 22 H 0.094 0.906 23 H 0.106 0.894 24 H 0.105 0.895 25 H 0.138 0.862 26 H 0.144 0.856 27 H 0.152 0.848 28 H 0.175 0.825 29 H 0.120 0.880 30 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.115 -13.117 -2.050 13.323 hybrid contribution 0.364 1.526 1.991 2.534 sum -0.751 -11.592 -0.060 11.616 Atomic orbital electron populations 1.20439 0.85525 1.02937 1.04595 1.26599 1.01423 0.90150 1.02998 1.66045 1.04692 1.30313 1.13290 1.18980 0.88739 0.91104 1.05019 1.23700 0.98264 0.96229 1.10715 1.20059 0.89231 0.99235 1.04768 1.21098 0.98584 0.92903 0.98762 1.20571 0.96129 0.95614 1.01671 1.19961 0.90232 0.96899 0.89693 1.17976 0.91723 0.83039 0.94159 0.92272 1.59610 1.05617 1.17303 1.55663 1.21661 1.47608 0.95130 0.92653 0.92912 1.24972 0.94482 0.96654 0.97420 1.69739 1.48266 1.04710 1.30537 0.86456 0.77951 0.78535 0.84575 1.19849 1.20933 1.20819 1.83460 0.97409 1.12574 1.77120 0.90590 0.89390 0.89458 0.86229 0.85600 0.84752 0.82529 0.87966 0.92533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.94 10.46 36.01 0.38 -0.56 16 2 C 0.07 1.30 7.29 -13.90 -0.10 1.20 16 3 N -0.43 -9.49 10.43 -9.08 -0.09 -9.58 16 4 C 0.08 1.79 6.75 -84.96 -0.57 1.22 16 5 C -0.17 -3.22 6.56 -38.55 -0.25 -3.47 16 6 C -0.11 -1.79 10.07 -39.39 -0.40 -2.19 16 7 C -0.09 -1.49 10.04 -39.59 -0.40 -1.89 16 8 C -0.12 -2.30 9.18 -40.12 -0.37 -2.67 16 9 C 0.04 0.81 5.02 -104.34 -0.52 0.29 16 10 C 0.24 6.24 2.88 -70.02 -0.20 6.04 16 11 H 0.06 1.75 8.08 -51.92 -0.42 1.33 16 12 N -0.85 -20.38 8.77 -6.65 -0.06 -20.44 16 13 C -0.53 -14.73 8.71 -34.44 -0.30 -15.03 16 14 H 0.05 1.51 7.74 -52.49 -0.41 1.11 16 15 C 0.07 1.84 5.38 -17.82 -0.10 1.75 16 16 N -0.89 -25.02 11.54 55.43 0.64 -24.38 16 17 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 18 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 S 0.04 0.63 23.08 -107.50 -2.48 -1.85 16 22 H 0.08 0.72 8.11 -51.93 -0.42 0.30 16 23 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 24 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 25 H 0.12 1.57 8.06 -52.48 -0.42 1.15 16 26 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 27 H 0.13 2.44 6.19 -52.48 -0.32 2.12 16 28 H 0.36 9.18 7.08 -39.29 -0.28 8.90 16 29 H 0.31 6.87 7.17 -39.29 -0.28 6.59 16 30 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 272.08 15.07 4.10 4.10 Total: -1.00 -30.47 272.08 -8.71 -39.18 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: -2.96 Total: 11.80 kcal Atomic # 6 Polarization: -12.48 SS G_CDS: -2.83 Total: -15.32 kcal Atomic # 7 Polarization: -54.89 SS G_CDS: 0.49 Total: -54.40 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: 0.63 SS G_CDS: -2.48 Total: -1.85 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -30.47 -8.71 -39.18 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261035520.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.726 kcal (2) G-P(sol) polarization free energy of solvation -30.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds