Wall clock time and date at job start Mon Mar 30 2020 06:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.27927 * 124.23526 * 2 1 4 4 C 1.34668 * 117.85009 * 180.02562 * 3 2 1 5 5 C 1.39953 * 111.79469 * 359.97438 * 4 3 2 6 6 C 1.39293 * 120.26543 * 179.75634 * 5 4 3 7 7 C 1.37699 * 119.95778 * 0.45635 * 6 5 4 8 8 C 1.38751 * 120.05766 * 359.54678 * 7 6 5 9 9 C 1.36210 * 120.78731 * 0.22540 * 8 7 6 10 10 C 1.50693 * 119.79045 * 180.02562 * 9 8 7 11 11 H 1.09007 * 109.47223 * 144.98441 * 10 9 8 12 12 N 1.46899 * 109.47057 * 24.98387 * 10 9 8 13 13 C 1.50702 * 109.47403 * 264.98134 * 10 9 8 14 14 H 1.07996 * 119.99759 * 0.02562 * 13 10 9 15 15 C 1.37876 * 119.99779 * 179.97438 * 13 10 9 16 16 N 1.31511 * 120.00659 * 0.02562 * 15 13 10 17 17 Si 1.86803 * 119.99885 * 179.97438 * 15 13 10 18 18 H 1.48502 * 109.46834 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47240 * 120.00080 * 17 15 13 20 20 H 1.48501 * 109.47369 * 240.00387 * 17 15 13 21 21 S 1.70648 * 124.23432 * 180.02562 * 2 1 3 22 22 H 1.08997 * 109.46633 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.46806 * 299.98029 * 1 2 3 24 24 H 1.08997 * 109.47011 * 59.98145 * 1 2 3 25 25 H 1.08004 * 120.02382 * 180.25646 * 6 5 4 26 26 H 1.07995 * 119.96730 * 179.77447 * 7 6 5 27 27 H 1.08005 * 119.60503 * 180.20826 * 8 7 6 28 28 H 1.00908 * 111.00111 * 176.04435 * 12 10 9 29 29 H 1.00897 * 111.00363 * 299.99603 * 12 10 9 30 30 H 0.96991 * 120.00718 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2267 1.0576 0.0000 4 6 3.5650 0.9078 -0.0005 5 6 3.9369 -0.4414 -0.0004 6 6 5.2833 -0.7985 -0.0060 7 6 6.2538 0.1783 -0.0022 8 6 5.8917 1.5177 -0.0023 9 6 4.5802 1.8854 -0.0015 10 6 4.2123 3.3467 -0.0022 11 1 3.3069 3.4933 -0.5913 12 7 5.3097 4.1277 -0.5885 13 6 3.9702 3.8045 1.4131 14 1 4.0730 3.1071 2.2312 15 6 3.6187 5.1140 1.6634 16 7 3.4940 5.9635 0.6672 17 14 3.3179 5.6813 3.4176 18 1 3.5209 4.5418 4.3480 19 1 4.2686 6.7709 3.7554 20 1 1.9256 6.1822 3.5441 21 16 2.4670 -1.4108 -0.0006 22 1 -0.3632 -1.0277 -0.0005 23 1 -0.3633 0.5135 0.8902 24 1 -0.3633 0.5141 -0.8898 25 1 5.5659 -1.8409 -0.0101 26 1 7.2977 -0.0984 -0.0029 27 1 6.6590 2.2779 -0.0027 28 1 5.0617 5.1032 -0.6596 29 1 6.1609 4.0087 -0.0600 30 1 3.2463 6.8845 0.8433 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261035520.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:04 Heat of formation + Delta-G solvation = 28.358877 kcal Electronic energy + Delta-G solvation = -15489.345969 eV Core-core repulsion = 12988.671037 eV Total energy + Delta-G solvation = -2500.674932 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.068 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.35351 -38.27918 -36.50443 -33.65124 -32.46327 -30.93620 -29.16158 -27.91998 -25.13948 -24.29467 -22.16555 -21.47985 -19.11112 -18.64549 -17.30235 -16.86391 -16.55133 -16.21662 -16.01903 -15.41789 -14.85595 -14.35265 -14.00246 -13.89073 -13.74759 -13.33147 -13.20458 -13.00743 -12.88419 -12.62096 -12.33044 -12.05477 -11.97681 -11.45340 -10.90885 -10.66645 -10.39868 -9.48279 -9.28243 -8.84267 -8.14168 -6.39752 -0.43086 0.34274 0.38564 0.74116 1.30756 1.32967 1.44554 1.52287 2.32313 2.87385 3.01777 3.12503 3.73568 4.08097 4.18955 4.31946 4.47787 4.55124 4.64447 4.66038 4.78142 4.96365 5.04678 5.28714 5.30669 5.51041 5.60211 5.81231 5.92671 6.02922 6.60442 6.84072 6.87963 7.07959 7.34597 8.80352 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.021904 B = 0.008322 C = 0.006825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.015743 B = 3363.820894 C = 4101.457104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.067 3.933 3 N -0.497 5.497 4 C 0.049 3.951 5 C -0.200 4.200 6 C -0.096 4.096 7 C -0.086 4.086 8 C -0.120 4.120 9 C -0.015 4.015 10 C 0.253 3.747 11 H 0.005 0.995 12 N -0.841 5.841 13 C -0.544 4.544 14 H 0.035 0.965 15 C 0.022 3.978 16 N -0.915 5.915 17 Si 0.960 3.040 18 H -0.277 1.277 19 H -0.270 1.270 20 H -0.280 1.280 21 S 0.122 5.878 22 H 0.114 0.886 23 H 0.088 0.912 24 H 0.092 0.908 25 H 0.162 0.838 26 H 0.173 0.827 27 H 0.138 0.862 28 H 0.346 0.654 29 H 0.321 0.679 30 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.200 -14.932 -0.668 14.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.218 4.218 3 N -0.212 5.212 4 C -0.069 4.069 5 C -0.318 4.318 6 C -0.119 4.119 7 C -0.107 4.107 8 C -0.141 4.141 9 C -0.018 4.018 10 C 0.143 3.857 11 H 0.023 0.977 12 N -0.370 5.370 13 C -0.583 4.583 14 H 0.053 0.947 15 C -0.178 4.178 16 N -0.555 5.555 17 Si 0.785 3.215 18 H -0.202 1.202 19 H -0.195 1.195 20 H -0.206 1.206 21 S 0.377 5.623 22 H 0.132 0.868 23 H 0.107 0.893 24 H 0.111 0.889 25 H 0.180 0.820 26 H 0.191 0.809 27 H 0.156 0.844 28 H 0.161 0.839 29 H 0.132 0.868 30 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.533 -15.723 -1.377 15.792 hybrid contribution 0.134 2.186 1.733 2.793 sum -0.398 -13.537 0.356 13.548 Atomic orbital electron populations 1.20680 0.82626 1.05506 1.04835 1.27445 1.03408 0.90608 1.00338 1.66087 1.05418 1.33058 1.16601 1.19178 0.89023 0.92645 1.06062 1.24180 1.00816 0.95849 1.10984 1.20642 0.88064 1.01373 1.01803 1.21534 1.01002 0.91065 0.97097 1.20766 0.94692 0.97758 1.00856 1.19832 0.92335 0.95253 0.94414 1.17562 0.90156 0.85869 0.92142 0.97667 1.59544 1.05667 1.16198 1.55622 1.21792 1.48074 0.95173 0.93295 0.94711 1.25714 0.94204 0.96692 1.01188 1.69840 1.48509 1.04961 1.32184 0.85496 0.78002 0.78046 0.79964 1.20177 1.19514 1.20559 1.83004 0.94289 1.09530 1.75494 0.86788 0.89333 0.88937 0.82010 0.80929 0.84410 0.83875 0.86785 0.92256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.82 10.46 71.24 0.75 -1.07 16 2 C 0.07 2.29 7.29 88.68 0.65 2.94 16 3 N -0.50 -22.68 10.43 -182.51 -1.90 -24.59 16 4 C 0.05 2.26 6.75 39.78 0.27 2.53 16 5 C -0.20 -7.23 6.56 22.94 0.15 -7.08 16 6 C -0.10 -2.81 10.07 22.40 0.23 -2.59 16 7 C -0.09 -2.52 10.04 22.26 0.22 -2.30 16 8 C -0.12 -4.61 9.18 21.92 0.20 -4.41 16 9 C -0.02 -0.71 5.02 -19.68 -0.10 -0.81 16 10 C 0.25 13.89 2.88 43.42 0.13 14.02 16 11 H 0.01 0.35 8.08 -2.38 -0.02 0.33 16 12 N -0.84 -42.12 8.77 -174.95 -1.53 -43.65 16 13 C -0.54 -31.57 8.71 25.60 0.22 -31.35 16 14 H 0.03 2.09 7.74 -2.91 -0.02 2.06 16 15 C 0.02 1.24 5.38 84.65 0.46 1.70 16 16 N -0.92 -52.98 11.54 21.45 0.25 -52.73 16 17 Si 0.96 45.05 29.54 68.60 2.03 47.08 16 18 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 19 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 20 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 21 S 0.12 3.49 23.08 -56.49 -1.30 2.19 16 22 H 0.11 1.78 8.11 -2.39 -0.02 1.77 16 23 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 24 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 25 H 0.16 3.34 8.06 -2.91 -0.02 3.31 16 26 H 0.17 3.39 8.06 -2.91 -0.02 3.36 16 27 H 0.14 5.00 6.19 -2.91 -0.02 4.98 16 28 H 0.35 18.62 7.08 -89.69 -0.63 17.99 16 29 H 0.32 14.68 7.17 -89.70 -0.64 14.04 16 30 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 Total: -1.00 -70.73 272.08 0.60 -70.13 By element: Atomic # 1 Polarization: 30.10 SS G_CDS: -0.09 Total: 30.01 kcal Atomic # 6 Polarization: -31.59 SS G_CDS: 3.17 Total: -28.43 kcal Atomic # 7 Polarization: -117.79 SS G_CDS: -3.19 Total: -120.98 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Atomic # 16 Polarization: 3.49 SS G_CDS: -1.30 Total: 2.19 kcal Total: -70.73 0.60 -70.13 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261035520.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.488 kcal (2) G-P(sol) polarization free energy of solvation -70.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds