Wall clock time and date at job start Mon Mar 30 2020 06:29:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37778 * 120.24291 * 2 1 4 4 C 1.39587 * 120.62370 * 180.02562 * 3 2 1 5 5 C 1.38221 * 119.97265 * 359.30743 * 4 3 2 6 6 C 1.39275 * 118.81757 * 0.95303 * 5 4 3 7 7 C 1.37812 * 121.05527 * 359.41849 * 6 5 4 8 8 C 1.50705 * 119.99409 * 179.91800 * 7 6 5 9 9 C 1.50049 * 124.74369 * 181.09988 * 5 4 3 10 10 H 1.09002 * 108.65936 * 97.70945 * 9 5 4 11 11 C 1.50700 * 108.66590 * 215.73534 * 9 5 4 12 12 H 1.08000 * 119.99872 * 5.17742 * 11 9 5 13 13 C 1.37871 * 119.99918 * 185.17231 * 11 9 5 14 14 N 1.31520 * 119.99991 * 11.88602 * 13 11 9 15 15 Si 1.86799 * 120.00088 * 191.88171 * 13 11 9 16 16 H 1.48494 * 109.47123 * 180.02562 * 15 13 11 17 17 H 1.48495 * 109.47093 * 300.00162 * 15 13 11 18 18 H 1.48501 * 109.46890 * 60.00046 * 15 13 11 19 19 C 1.51877 * 113.55861 * 336.79298 * 9 5 4 20 20 C 1.53531 * 108.96990 * 60.55609 * 19 9 5 21 21 S 1.76462 * 117.72899 * 178.58816 * 4 3 2 22 22 H 1.08993 * 109.47475 * 269.98068 * 1 2 3 23 23 H 1.09008 * 109.47237 * 29.98492 * 1 2 3 24 24 H 1.09001 * 109.46850 * 149.97774 * 1 2 3 25 25 H 1.08007 * 119.69598 * 0.09494 * 3 2 1 26 26 H 1.08003 * 119.47104 * 179.42887 * 6 5 4 27 27 H 1.08992 * 109.47105 * 89.99089 * 8 7 6 28 28 H 1.08995 * 109.46781 * 209.99665 * 8 7 6 29 29 H 1.09001 * 109.46717 * 329.98893 * 8 7 6 30 30 H 0.97001 * 119.99815 * 5.88806 * 14 13 11 31 31 H 1.08996 * 109.55600 * 180.40755 * 19 9 5 32 32 H 1.09003 * 109.54940 * 300.71468 * 19 9 5 33 33 H 1.09007 * 109.87834 * 167.95391 * 20 19 9 34 34 H 1.08992 * 109.94604 * 46.90342 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2009 1.1903 0.0000 4 6 3.5968 1.1995 -0.0005 5 6 4.2952 0.0069 0.0134 6 6 3.5816 -1.1891 0.0075 7 6 2.2035 -1.1947 0.0001 8 6 1.4555 -2.5030 -0.0080 9 6 5.7911 -0.1078 0.0380 10 1 6.1116 -0.2704 1.0671 11 6 6.1969 -1.3020 -0.7868 12 1 5.4517 -1.8551 -1.3392 13 6 7.5195 -1.6884 -0.8363 14 7 8.3872 -1.1727 0.0069 15 14 8.0790 -2.9443 -2.1008 16 1 9.5358 -3.1871 -1.9462 17 1 7.3411 -4.2164 -1.8950 18 1 7.8047 -2.4282 -3.4659 19 6 6.5031 1.1204 -0.5018 20 6 6.1258 2.3345 0.3590 21 16 4.4074 2.7665 -0.0390 22 1 -0.3634 -0.0003 1.0276 23 1 -0.3634 0.8902 -0.5136 24 1 -0.3633 -0.8898 -0.5142 25 1 1.6599 2.1251 0.0016 26 1 4.1168 -2.1272 0.0089 27 1 1.2698 -2.8217 1.0176 28 1 0.5053 -2.3749 -0.5264 29 1 2.0504 -3.2585 -0.5213 30 1 8.0833 -0.5866 0.7176 31 1 7.5811 0.9648 -0.4606 32 1 6.1973 1.2954 -1.5333 33 1 6.7825 3.1727 0.1256 34 1 6.2094 2.0813 1.4158 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261040951.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:42 Heat of formation + Delta-G solvation = -0.969822 kcal Electronic energy + Delta-G solvation = -15975.959043 eV Core-core repulsion = 13577.552667 eV Total energy + Delta-G solvation = -2398.406376 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.21595 -36.04823 -32.68690 -31.67459 -31.51982 -28.23535 -26.48394 -25.42382 -23.38655 -21.57904 -21.29004 -19.26499 -17.04680 -16.55545 -15.34475 -14.64606 -14.48161 -13.96491 -13.78110 -13.47871 -13.21563 -12.80038 -12.61899 -12.50223 -12.14137 -11.94158 -11.64247 -11.48521 -11.27908 -10.96565 -10.84866 -10.60419 -10.30851 -10.14922 -9.67725 -9.53677 -8.91521 -8.55623 -8.46774 -7.86295 -6.77438 -6.45058 -4.18927 1.79614 1.98058 2.22484 2.96789 3.37610 3.40556 3.58368 4.21606 4.45689 5.16355 5.20238 5.32112 5.42558 5.45210 5.56165 5.64014 5.68910 5.71503 5.91360 5.94645 6.03000 6.10226 6.17480 6.26707 6.47377 6.50800 6.66844 6.76330 6.86670 7.05394 7.10945 7.29338 7.45213 7.61652 8.05097 8.31172 8.72531 9.48577 10.88107 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.019833 B = 0.009236 C = 0.006615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.432233 B = 3031.003783 C = 4231.668954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.098 4.098 3 C -0.105 4.105 4 C -0.087 4.087 5 C -0.034 4.034 6 C -0.090 4.090 7 C -0.101 4.101 8 C -0.110 4.110 9 C 0.058 3.942 10 H 0.034 0.966 11 C -0.593 4.593 12 H 0.058 0.942 13 C 0.026 3.974 14 N -0.904 5.904 15 Si 1.060 2.940 16 H -0.282 1.282 17 H -0.287 1.287 18 H -0.287 1.287 19 C -0.114 4.114 20 C -0.096 4.096 21 S -0.166 6.166 22 H 0.063 0.937 23 H 0.059 0.941 24 H 0.066 0.934 25 H 0.115 0.885 26 H 0.135 0.865 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.271 0.729 31 H 0.087 0.913 32 H 0.063 0.937 33 H 0.096 0.904 34 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.709 2.441 0.572 10.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.100 4.100 3 C -0.128 4.128 4 C -0.199 4.199 5 C -0.039 4.039 6 C -0.110 4.110 7 C -0.103 4.103 8 C -0.167 4.167 9 C 0.040 3.960 10 H 0.052 0.948 11 C -0.630 4.630 12 H 0.076 0.924 13 C -0.179 4.179 14 N -0.540 5.540 15 Si 0.888 3.112 16 H -0.207 1.207 17 H -0.214 1.214 18 H -0.213 1.213 19 C -0.153 4.153 20 C -0.244 4.244 21 S 0.075 5.925 22 H 0.082 0.918 23 H 0.078 0.922 24 H 0.085 0.915 25 H 0.133 0.867 26 H 0.153 0.847 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.105 0.895 32 H 0.081 0.919 33 H 0.114 0.886 34 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -9.704 2.846 -0.237 10.116 hybrid contribution -0.782 -0.353 0.849 1.207 sum -10.486 2.493 0.612 10.795 Atomic orbital electron populations 1.20732 0.91760 1.02193 1.01679 1.19385 0.95179 0.92433 1.02996 1.20539 0.91756 0.97299 1.03238 1.21251 0.95722 0.95379 1.07576 1.20137 0.97385 0.90889 0.95514 1.21414 0.92254 0.99047 0.98254 1.19681 0.94019 0.94428 1.02167 1.20774 0.99651 0.94538 1.01697 1.17629 0.85892 0.95021 0.97497 0.94824 1.21973 0.96137 1.12880 1.32052 0.92386 1.25779 0.93079 0.99460 0.99568 1.70811 1.37184 1.31247 1.14746 0.83680 0.76351 0.75572 0.75639 1.20724 1.21362 1.21303 1.21784 1.03277 0.92228 0.98017 1.23865 0.93371 1.03410 1.03766 1.84832 1.08085 1.10043 1.89495 0.91799 0.92199 0.91520 0.86699 0.84729 0.91786 0.91796 0.91758 0.91810 0.89467 0.91866 0.88570 0.90064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.32 9.62 36.00 0.35 -0.98 16 2 C -0.10 -1.64 5.87 -104.77 -0.62 -2.25 16 3 C -0.11 -1.90 9.32 -39.25 -0.37 -2.27 16 4 C -0.09 -1.79 6.05 -39.08 -0.24 -2.02 16 5 C -0.03 -0.76 5.53 -104.56 -0.58 -1.34 16 6 C -0.09 -1.88 8.24 -39.35 -0.32 -2.21 16 7 C -0.10 -1.78 5.87 -104.75 -0.61 -2.40 16 8 C -0.11 -1.52 9.61 36.01 0.35 -1.18 16 9 C 0.06 1.41 1.63 -93.81 -0.15 1.25 16 10 H 0.03 0.89 7.37 -51.93 -0.38 0.51 16 11 C -0.59 -15.70 7.45 -34.44 -0.26 -15.95 16 12 H 0.06 1.54 6.35 -52.49 -0.33 1.21 16 13 C 0.03 0.70 5.10 -17.82 -0.09 0.60 16 14 N -0.90 -25.56 12.65 55.43 0.70 -24.86 16 15 Si 1.06 24.16 29.92 -169.99 -5.09 19.07 16 16 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 17 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 18 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 19 C -0.11 -2.57 4.75 -27.03 -0.13 -2.70 16 20 C -0.10 -1.82 6.52 37.43 0.24 -1.57 16 21 S -0.17 -3.12 21.99 -107.50 -2.36 -5.48 16 22 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 23 H 0.06 0.67 8.09 -51.92 -0.42 0.25 16 24 H 0.07 0.74 5.97 -51.93 -0.31 0.43 16 25 H 0.12 1.85 8.05 -52.48 -0.42 1.43 16 26 H 0.13 2.93 6.47 -52.48 -0.34 2.60 16 27 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.06 0.75 5.98 -51.93 -0.31 0.44 16 29 H 0.06 0.88 8.08 -51.93 -0.42 0.46 16 30 H 0.27 7.58 6.34 -40.82 -0.26 7.33 16 31 H 0.09 2.11 6.18 -51.93 -0.32 1.79 16 32 H 0.06 1.48 8.03 -51.93 -0.42 1.06 16 33 H 0.10 1.60 8.14 -51.92 -0.42 1.17 16 34 H 0.08 1.52 8.08 -51.93 -0.42 1.10 16 LS Contribution 280.84 15.07 4.23 4.23 Total: -1.00 -28.14 280.84 -9.36 -37.50 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -4.42 Total: 2.55 kcal Atomic # 6 Polarization: -30.58 SS G_CDS: -2.43 Total: -33.01 kcal Atomic # 7 Polarization: -25.56 SS G_CDS: 0.70 Total: -24.86 kcal Atomic # 14 Polarization: 24.16 SS G_CDS: -5.09 Total: 19.07 kcal Atomic # 16 Polarization: -3.12 SS G_CDS: -2.36 Total: -5.48 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -28.14 -9.36 -37.50 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261040951.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.534 kcal (2) G-P(sol) polarization free energy of solvation -28.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds