Wall clock time and date at job start Mon Mar 30 2020 06:29:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37778 * 120.24291 * 2 1 4 4 C 1.39587 * 120.62370 * 180.02562 * 3 2 1 5 5 C 1.38221 * 119.97265 * 359.30743 * 4 3 2 6 6 C 1.39275 * 118.81757 * 0.95303 * 5 4 3 7 7 C 1.37812 * 121.05527 * 359.41849 * 6 5 4 8 8 C 1.50705 * 119.99409 * 179.91800 * 7 6 5 9 9 C 1.50049 * 124.74369 * 181.09988 * 5 4 3 10 10 H 1.09002 * 108.65936 * 97.70945 * 9 5 4 11 11 C 1.50700 * 108.66590 * 215.73534 * 9 5 4 12 12 H 1.08000 * 119.99872 * 5.17742 * 11 9 5 13 13 C 1.37871 * 119.99918 * 185.17231 * 11 9 5 14 14 N 1.31520 * 119.99991 * 11.88602 * 13 11 9 15 15 Si 1.86799 * 120.00088 * 191.88171 * 13 11 9 16 16 H 1.48494 * 109.47123 * 180.02562 * 15 13 11 17 17 H 1.48495 * 109.47093 * 300.00162 * 15 13 11 18 18 H 1.48501 * 109.46890 * 60.00046 * 15 13 11 19 19 C 1.51877 * 113.55861 * 336.79298 * 9 5 4 20 20 C 1.53531 * 108.96990 * 60.55609 * 19 9 5 21 21 S 1.76462 * 117.72899 * 178.58816 * 4 3 2 22 22 H 1.08993 * 109.47475 * 269.98068 * 1 2 3 23 23 H 1.09008 * 109.47237 * 29.98492 * 1 2 3 24 24 H 1.09001 * 109.46850 * 149.97774 * 1 2 3 25 25 H 1.08007 * 119.69598 * 0.09494 * 3 2 1 26 26 H 1.08003 * 119.47104 * 179.42887 * 6 5 4 27 27 H 1.08992 * 109.47105 * 89.99089 * 8 7 6 28 28 H 1.08995 * 109.46781 * 209.99665 * 8 7 6 29 29 H 1.09001 * 109.46717 * 329.98893 * 8 7 6 30 30 H 0.97001 * 119.99815 * 5.88806 * 14 13 11 31 31 H 1.08996 * 109.55600 * 180.40755 * 19 9 5 32 32 H 1.09003 * 109.54940 * 300.71468 * 19 9 5 33 33 H 1.09007 * 109.87834 * 167.95391 * 20 19 9 34 34 H 1.08992 * 109.94604 * 46.90342 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2009 1.1903 0.0000 4 6 3.5968 1.1995 -0.0005 5 6 4.2952 0.0069 0.0134 6 6 3.5816 -1.1891 0.0075 7 6 2.2035 -1.1947 0.0001 8 6 1.4555 -2.5030 -0.0080 9 6 5.7911 -0.1078 0.0380 10 1 6.1116 -0.2704 1.0671 11 6 6.1969 -1.3020 -0.7868 12 1 5.4517 -1.8551 -1.3392 13 6 7.5195 -1.6884 -0.8363 14 7 8.3872 -1.1727 0.0069 15 14 8.0790 -2.9443 -2.1008 16 1 9.5358 -3.1871 -1.9462 17 1 7.3411 -4.2164 -1.8950 18 1 7.8047 -2.4282 -3.4659 19 6 6.5031 1.1204 -0.5018 20 6 6.1258 2.3345 0.3590 21 16 4.4074 2.7665 -0.0390 22 1 -0.3634 -0.0003 1.0276 23 1 -0.3634 0.8902 -0.5136 24 1 -0.3633 -0.8898 -0.5142 25 1 1.6599 2.1251 0.0016 26 1 4.1168 -2.1272 0.0089 27 1 1.2698 -2.8217 1.0176 28 1 0.5053 -2.3749 -0.5264 29 1 2.0504 -3.2585 -0.5213 30 1 8.0833 -0.5866 0.7176 31 1 7.5811 0.9648 -0.4606 32 1 6.1973 1.2954 -1.5333 33 1 6.7825 3.1727 0.1256 34 1 6.2094 2.0813 1.4158 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261040951.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:42 Heat of formation + Delta-G solvation = -14.224522 kcal Electronic energy + Delta-G solvation = -15976.533810 eV Core-core repulsion = 13577.552667 eV Total energy + Delta-G solvation = -2398.981143 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.71132 -37.77537 -34.39404 -33.25374 -33.00514 -29.77064 -27.87424 -26.94559 -25.26561 -23.04061 -22.92214 -20.90449 -18.98813 -18.13164 -16.81207 -16.22787 -16.05255 -15.58724 -15.23513 -15.01951 -14.78713 -14.53169 -13.98051 -13.58257 -13.51521 -13.37853 -13.17002 -13.04379 -12.81205 -12.64633 -12.43573 -12.07378 -12.02644 -11.96036 -11.29534 -11.26150 -10.60259 -10.51883 -10.19622 -9.41888 -8.60387 -8.26960 -6.34322 0.30404 0.48350 0.70845 1.40676 1.51187 1.56962 1.77004 2.52873 2.73530 3.12544 3.88288 3.90817 3.97734 4.00634 4.09584 4.29838 4.32284 4.42183 4.63288 4.72432 4.75104 4.80099 4.83151 4.90590 4.99075 5.05589 5.17686 5.24613 5.33062 5.37595 5.44750 5.68719 5.80164 6.02231 6.14739 6.18516 6.59434 7.39877 8.72244 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.019833 B = 0.009236 C = 0.006615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.432233 B = 3031.003783 C = 4231.668954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.089 4.089 3 C -0.109 4.109 4 C -0.109 4.109 5 C -0.071 4.071 6 C -0.114 4.114 7 C -0.100 4.100 8 C -0.108 4.108 9 C 0.061 3.939 10 H 0.000 1.000 11 C -0.600 4.600 12 H 0.050 0.950 13 C -0.020 4.020 14 N -0.926 5.926 15 Si 1.103 2.897 16 H -0.283 1.283 17 H -0.271 1.271 18 H -0.275 1.275 19 C -0.104 4.104 20 C -0.094 4.094 21 S -0.137 6.137 22 H 0.082 0.918 23 H 0.075 0.925 24 H 0.084 0.916 25 H 0.139 0.861 26 H 0.112 0.888 27 H 0.080 0.920 28 H 0.093 0.907 29 H 0.059 0.941 30 H 0.260 0.740 31 H 0.064 0.936 32 H 0.050 0.950 33 H 0.123 0.877 34 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.485 2.704 0.006 13.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.091 4.091 3 C -0.132 4.132 4 C -0.221 4.221 5 C -0.076 4.076 6 C -0.133 4.133 7 C -0.102 4.102 8 C -0.164 4.164 9 C 0.042 3.958 10 H 0.018 0.982 11 C -0.637 4.637 12 H 0.069 0.931 13 C -0.219 4.219 14 N -0.563 5.563 15 Si 0.926 3.074 16 H -0.209 1.209 17 H -0.196 1.196 18 H -0.201 1.201 19 C -0.143 4.143 20 C -0.242 4.242 21 S 0.104 5.896 22 H 0.101 0.899 23 H 0.094 0.906 24 H 0.103 0.897 25 H 0.157 0.843 26 H 0.130 0.870 27 H 0.098 0.902 28 H 0.111 0.889 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.082 0.918 32 H 0.069 0.931 33 H 0.142 0.858 34 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -12.503 3.113 -0.798 12.909 hybrid contribution -0.044 -0.434 1.059 1.146 sum -12.547 2.679 0.261 12.832 Atomic orbital electron populations 1.20842 0.87928 1.03971 1.03379 1.19949 0.97784 0.91262 1.00078 1.20917 0.90783 0.99072 1.02406 1.21522 0.97147 0.95347 1.08119 1.20019 0.96181 0.92578 0.98811 1.21360 0.94054 0.97673 1.00247 1.20089 0.92797 0.96938 1.00374 1.20856 1.00273 0.92227 1.03088 1.17501 0.88055 0.95058 0.95148 0.98221 1.22247 0.96077 1.13638 1.31780 0.93149 1.27043 0.93551 1.00734 1.00598 1.70907 1.37528 1.32391 1.15506 0.83107 0.75945 0.74303 0.74056 1.20877 1.19644 1.20081 1.21532 1.01503 0.93432 0.97844 1.23787 0.94813 1.02668 1.02905 1.84597 1.06783 1.08765 1.89465 0.89922 0.90581 0.89688 0.84308 0.87036 0.90190 0.88874 0.92213 0.92991 0.91766 0.93131 0.85836 0.90154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.07 9.62 71.23 0.69 -1.38 16 2 C -0.09 -2.69 5.87 -19.96 -0.12 -2.81 16 3 C -0.11 -3.69 9.32 22.49 0.21 -3.48 16 4 C -0.11 -4.44 6.05 22.59 0.14 -4.30 16 5 C -0.07 -3.26 5.53 -19.82 -0.11 -3.37 16 6 C -0.11 -4.87 8.24 22.42 0.18 -4.69 16 7 C -0.10 -3.38 5.87 -19.95 -0.12 -3.49 16 8 C -0.11 -2.69 9.61 71.24 0.68 -2.01 16 9 C 0.06 3.11 1.63 -12.86 -0.02 3.09 16 10 H 0.00 0.01 7.37 -2.39 -0.02 -0.01 16 11 C -0.60 -33.24 7.45 25.60 0.19 -33.05 16 12 H 0.05 2.80 6.35 -2.91 -0.02 2.78 16 13 C -0.02 -1.12 5.10 84.65 0.43 -0.68 16 14 N -0.93 -54.58 12.65 21.45 0.27 -54.31 16 15 Si 1.10 49.56 29.92 68.60 2.05 51.61 16 16 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 17 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 18 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 19 C -0.10 -4.89 4.75 30.40 0.14 -4.74 16 20 C -0.09 -3.58 6.52 72.16 0.47 -3.11 16 21 S -0.14 -5.03 21.99 -56.49 -1.24 -6.27 16 22 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 23 H 0.08 1.31 8.09 -2.38 -0.02 1.29 16 24 H 0.08 1.40 5.97 -2.39 -0.01 1.39 16 25 H 0.14 3.98 8.05 -2.91 -0.02 3.96 16 26 H 0.11 5.15 6.47 -2.91 -0.02 5.13 16 27 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.09 1.77 5.98 -2.39 -0.01 1.76 16 29 H 0.06 1.54 8.08 -2.39 -0.02 1.52 16 30 H 0.26 15.44 6.34 -92.71 -0.59 14.85 16 31 H 0.06 3.28 6.18 -2.39 -0.01 3.27 16 32 H 0.05 2.45 8.03 -2.39 -0.02 2.43 16 33 H 0.12 4.00 8.14 -2.38 -0.02 3.98 16 34 H 0.08 3.07 8.08 -2.39 -0.02 3.06 16 Total: -1.00 -63.33 280.84 5.13 -58.20 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: 1.28 Total: 14.80 kcal Atomic # 6 Polarization: -66.80 SS G_CDS: 2.77 Total: -64.02 kcal Atomic # 7 Polarization: -54.58 SS G_CDS: 0.27 Total: -54.31 kcal Atomic # 14 Polarization: 49.56 SS G_CDS: 2.05 Total: 51.61 kcal Atomic # 16 Polarization: -5.03 SS G_CDS: -1.24 Total: -6.27 kcal Total: -63.33 5.13 -58.20 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261040951.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.975 kcal (2) G-P(sol) polarization free energy of solvation -63.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds