Wall clock time and date at job start Mon Mar 30 2020 05:47:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99950 * 2 1 4 4 H 1.48505 * 109.46843 * 89.99665 * 3 2 1 5 5 H 1.48494 * 109.47052 * 329.99627 * 3 2 1 6 6 H 1.48496 * 109.47183 * 209.99394 * 3 2 1 7 7 C 1.37878 * 120.00046 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00080 * 177.14505 * 7 2 1 9 9 C 1.50701 * 120.00011 * 357.14639 * 7 2 1 10 10 H 1.09003 * 109.47317 * 326.23406 * 9 7 2 11 11 C 1.52997 * 109.47454 * 206.22960 * 9 7 2 12 12 N 1.46902 * 109.46949 * 65.25424 * 11 9 7 13 13 C 1.50698 * 109.46841 * 86.22728 * 9 7 2 14 14 C 1.38795 * 119.60786 * 60.00339 * 13 9 7 15 15 C 1.37661 * 120.06404 * 179.97438 * 14 13 9 16 16 C 1.39328 * 119.95516 * 0.02562 * 15 14 13 17 17 S 1.76076 * 131.72981 * 179.97438 * 16 15 14 18 18 C 1.70653 * 90.82459 * 180.02562 * 17 16 15 19 19 N 1.27922 * 111.52317 * 0.02562 * 18 17 16 20 20 C 1.34662 * 117.85118 * 359.97438 * 19 18 17 21 21 C 1.36178 * 119.61570 * 239.72293 * 13 9 7 22 22 H 0.97005 * 119.99886 * 174.48464 * 1 2 3 23 23 H 1.08993 * 109.47396 * 185.25935 * 11 9 7 24 24 H 1.09005 * 109.46903 * 305.26437 * 11 9 7 25 25 H 1.00904 * 110.99922 * 62.81551 * 12 11 9 26 26 H 1.00899 * 110.99951 * 186.76781 * 12 11 9 27 27 H 1.08000 * 119.96805 * 359.97438 * 14 13 9 28 28 H 1.07999 * 120.01887 * 179.97438 * 15 14 13 29 29 H 1.08003 * 124.23808 * 180.02562 * 18 17 16 30 30 H 1.08008 * 119.78416 * 0.02562 * 21 13 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 1.4001 5 1 1.4466 2.6526 -0.7001 6 1 3.5467 1.4402 -0.6999 7 6 2.0045 -1.1941 0.0005 8 1 3.0835 -1.1947 -0.0461 9 6 1.2524 -2.4983 0.0661 10 1 0.3563 -2.3709 0.6734 11 6 2.1452 -3.5710 0.6931 12 7 2.4250 -3.2191 2.0916 13 6 0.8598 -2.9222 -1.3257 14 6 1.8444 -3.1447 -2.2783 15 6 1.4963 -3.5326 -3.5524 16 6 0.1541 -3.7015 -3.8859 17 16 -0.6290 -4.1786 -5.3891 18 6 -2.1657 -4.0492 -4.6583 19 7 -2.0745 -3.6893 -3.4342 20 6 -0.8436 -3.4778 -2.9307 21 6 -0.4566 -3.0879 -1.6325 22 1 -0.4850 -0.8362 -0.0807 23 1 1.6369 -4.5344 0.6555 24 1 3.0823 -3.6327 0.1396 25 1 1.5760 -3.2004 2.6366 26 1 3.1000 -3.8510 2.4954 27 1 2.8847 -3.0134 -2.0196 28 1 2.2631 -3.7052 -4.2931 29 1 -3.0984 -4.2464 -5.1659 30 1 -1.2094 -2.9144 -0.8776 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261050705.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:53 Heat of formation + Delta-G solvation = 26.405944 kcal Electronic energy + Delta-G solvation = -15464.828139 eV Core-core repulsion = 12964.068521 eV Total energy + Delta-G solvation = -2500.759617 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.068 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.36736 -38.77720 -36.33282 -34.37190 -32.38200 -31.17169 -28.77901 -26.10238 -25.69749 -23.64273 -23.22134 -21.32288 -19.39824 -18.75547 -17.36355 -17.02910 -16.57147 -15.87675 -15.71476 -15.65523 -15.33257 -15.05093 -14.67920 -14.24958 -13.63639 -13.16676 -13.12856 -12.86370 -12.63802 -12.49983 -11.95005 -11.79488 -11.58075 -11.05422 -10.64597 -10.58670 -10.46945 -9.54114 -9.34494 -8.93777 -8.45529 -6.16937 -0.49488 0.28035 0.35665 0.74012 1.45302 1.55497 1.63600 1.79352 2.62190 2.78160 3.08571 3.32144 3.66774 3.85173 4.20991 4.23921 4.30322 4.41184 4.46167 4.54065 4.81471 4.90196 4.98392 5.13105 5.27931 5.38498 5.77039 5.84332 6.12240 6.34710 6.42352 6.63901 6.72793 6.81784 7.58282 8.91496 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.024452 B = 0.007270 C = 0.006516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.805164 B = 3850.367896 C = 4296.372068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.034 4.034 3 Si 1.108 2.892 4 H -0.278 1.278 5 H -0.296 1.296 6 H -0.268 1.268 7 C -0.548 4.548 8 H 0.050 0.950 9 C 0.059 3.941 10 H 0.008 0.992 11 C 0.094 3.906 12 N -0.842 5.842 13 C -0.034 4.034 14 C -0.089 4.089 15 C -0.075 4.075 16 C -0.216 4.216 17 S 0.137 5.863 18 C 0.065 3.935 19 N -0.508 5.508 20 C 0.059 3.941 21 C -0.105 4.105 22 H 0.259 0.741 23 H 0.010 0.990 24 H 0.067 0.933 25 H 0.336 0.664 26 H 0.344 0.656 27 H 0.141 0.859 28 H 0.160 0.840 29 H 0.243 0.757 30 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.852 -10.348 -9.343 14.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.232 4.232 3 Si 0.932 3.068 4 H -0.205 1.205 5 H -0.222 1.222 6 H -0.193 1.193 7 C -0.586 4.586 8 H 0.069 0.931 9 C 0.039 3.961 10 H 0.026 0.974 11 C -0.037 4.037 12 N -0.372 5.372 13 C -0.037 4.037 14 C -0.111 4.111 15 C -0.098 4.098 16 C -0.334 4.334 17 S 0.389 5.611 18 C -0.239 4.239 19 N -0.221 5.221 20 C -0.059 4.059 21 C -0.126 4.126 22 H 0.070 0.930 23 H 0.028 0.972 24 H 0.086 0.914 25 H 0.148 0.852 26 H 0.158 0.842 27 H 0.159 0.841 28 H 0.178 0.822 29 H 0.259 0.741 30 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 1.702 -8.249 -10.264 13.277 hybrid contribution -0.621 -2.044 1.388 2.548 sum 1.080 -10.294 -8.876 13.635 Atomic orbital electron populations 1.70848 1.07988 1.30496 1.49117 1.26972 0.96532 1.06035 0.93625 0.83037 0.74340 0.72103 0.77297 1.20452 1.22211 1.19292 1.21872 0.93760 0.91081 1.51924 0.93128 1.18043 0.95213 0.94922 0.87886 0.97413 1.21559 0.98556 0.93686 0.89886 1.58374 1.16895 1.59141 1.02799 1.20285 0.91940 0.91989 0.99525 1.21153 1.00125 0.97603 0.92176 1.20610 0.92780 0.99427 0.96952 1.24021 0.99577 1.11291 0.98498 1.83275 0.99490 1.68255 1.10039 1.28784 1.04457 0.98537 0.92101 1.66193 1.24994 1.16669 1.14288 1.19297 0.86963 1.03794 0.95892 1.20180 0.96267 1.02560 0.93630 0.93039 0.97159 0.91445 0.85238 0.84246 0.84099 0.82234 0.74100 0.88340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.35 13.58 21.45 0.29 -58.06 16 2 C -0.03 -1.92 5.46 84.65 0.46 -1.46 16 3 Si 1.11 51.31 29.90 68.60 2.05 53.36 16 4 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 5 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 6 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 7 C -0.55 -29.26 7.65 25.60 0.20 -29.06 16 8 H 0.05 2.69 7.81 -2.91 -0.02 2.66 16 9 C 0.06 2.81 1.79 -12.29 -0.02 2.79 16 10 H 0.01 0.42 6.60 -2.39 -0.02 0.40 16 11 C 0.09 3.69 5.88 86.30 0.51 4.19 16 12 N -0.84 -30.66 9.31 -186.72 -1.74 -32.39 16 13 C -0.03 -1.52 4.62 -20.21 -0.09 -1.61 16 14 C -0.09 -3.45 8.83 22.27 0.20 -3.25 16 15 C -0.08 -2.51 10.07 22.40 0.23 -2.29 16 16 C -0.22 -7.57 6.56 22.94 0.15 -7.42 16 17 S 0.14 3.38 23.17 -56.49 -1.31 2.07 16 18 C 0.07 1.71 12.10 130.81 1.58 3.29 16 19 N -0.51 -18.95 10.57 -194.76 -2.06 -21.01 16 20 C 0.06 2.44 7.00 39.79 0.28 2.72 16 21 C -0.10 -4.85 9.06 22.46 0.20 -4.65 16 22 H 0.26 16.11 5.97 -92.70 -0.55 15.55 16 23 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 24 H 0.07 2.52 7.55 -2.38 -0.02 2.51 16 25 H 0.34 11.97 9.06 -89.69 -0.81 11.16 16 26 H 0.34 9.90 9.08 -89.69 -0.81 9.09 16 27 H 0.14 5.02 7.61 -2.91 -0.02 5.00 16 28 H 0.16 3.99 8.06 -2.91 -0.02 3.97 16 29 H 0.24 3.72 8.06 -2.91 -0.02 3.69 16 30 H 0.10 4.86 7.74 -2.91 -0.02 4.84 16 Total: -1.00 -69.81 272.53 0.70 -69.11 By element: Atomic # 1 Polarization: 23.90 SS G_CDS: -0.23 Total: 23.67 kcal Atomic # 6 Polarization: -40.43 SS G_CDS: 3.69 Total: -36.75 kcal Atomic # 7 Polarization: -107.96 SS G_CDS: -3.51 Total: -111.46 kcal Atomic # 14 Polarization: 51.31 SS G_CDS: 2.05 Total: 53.36 kcal Atomic # 16 Polarization: 3.38 SS G_CDS: -1.31 Total: 2.07 kcal Total: -69.81 0.70 -69.11 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261050705.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.515 kcal (2) G-P(sol) polarization free energy of solvation -69.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds