Wall clock time and date at job start Mon Mar 30 2020 05:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00129 * 2 1 4 4 H 1.48496 * 109.47319 * 239.99985 * 3 2 1 5 5 H 1.48503 * 109.46734 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47266 * 119.99799 * 3 2 1 7 7 C 1.37878 * 120.00126 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00306 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99902 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.46959 * 299.99551 * 9 7 2 11 11 C 1.52997 * 109.47078 * 59.99463 * 9 7 2 12 12 N 1.46905 * 109.47150 * 184.99848 * 11 9 7 13 13 C 1.50701 * 109.47269 * 179.97438 * 9 7 2 14 14 C 1.38793 * 119.60507 * 299.72652 * 13 9 7 15 15 C 1.37663 * 120.05992 * 179.76323 * 14 13 9 16 16 C 1.39339 * 119.95266 * 0.50685 * 15 14 13 17 17 S 1.76078 * 131.72655 * 179.71975 * 16 15 14 18 18 C 1.70651 * 90.82434 * 180.02562 * 17 16 15 19 19 N 1.27933 * 111.52022 * 359.97438 * 18 17 16 20 20 C 1.34653 * 117.85115 * 0.02562 * 19 18 17 21 21 C 1.36176 * 119.60860 * 119.99745 * 13 9 7 22 22 H 0.96999 * 120.00073 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.47630 * 305.00104 * 11 9 7 24 24 H 1.09004 * 109.47346 * 65.00234 * 11 9 7 25 25 H 1.00901 * 110.99731 * 56.05181 * 12 11 9 26 26 H 1.00898 * 110.99834 * 180.02562 * 12 11 9 27 27 H 1.08001 * 119.97297 * 359.97438 * 14 13 9 28 28 H 1.07994 * 120.02054 * 180.25417 * 15 14 13 29 29 H 1.07992 * 124.23766 * 180.02562 * 18 17 16 30 30 H 1.07997 * 119.79227 * 0.02562 * 21 13 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6241 -2.5567 0.8903 11 6 0.3719 -2.5804 -1.2489 12 7 -0.4515 -3.7956 -1.1902 13 6 2.2304 -3.6446 0.0005 14 6 3.1307 -3.7769 -1.0474 15 6 4.0326 -4.8170 -1.0544 16 6 4.0342 -5.7435 -0.0137 17 16 5.0242 -7.1687 0.2850 18 6 4.1846 -7.4775 1.7383 19 7 3.2765 -6.6018 1.9508 20 6 3.1260 -5.6186 1.0432 21 6 2.2176 -4.5406 1.0259 22 1 -0.4850 0.8400 -0.0004 23 1 -0.2756 -1.7048 -1.2953 24 1 1.0038 -2.6123 -2.1365 25 1 -0.9994 -3.8205 -0.3433 26 1 -1.0413 -3.8725 -2.0052 27 1 3.1261 -3.0614 -1.8564 28 1 4.7356 -4.9170 -1.8681 29 1 4.3943 -8.3076 2.3965 30 1 1.5069 -4.4250 1.8307 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261050707.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:55 Heat of formation + Delta-G solvation = 48.795926 kcal Electronic energy + Delta-G solvation = -15356.889733 eV Core-core repulsion = 12857.101018 eV Total energy + Delta-G solvation = -2499.788715 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.068 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.89866 -37.13918 -34.59892 -32.22573 -30.89575 -29.65772 -27.33148 -24.64315 -23.95375 -22.17106 -21.58942 -19.36835 -17.93157 -16.58732 -15.88534 -15.43078 -14.95628 -14.65327 -14.30719 -13.92083 -13.58674 -13.31391 -13.08656 -12.27225 -11.94576 -11.75590 -11.47815 -11.03201 -10.95380 -10.82330 -10.49921 -10.09414 -9.73395 -9.62759 -9.35504 -9.23791 -8.56978 -8.03218 -7.65422 -7.50289 -6.14882 -4.23469 0.88333 1.62304 1.84542 2.04905 2.85834 3.24216 3.29212 3.32404 4.26986 4.36015 4.42815 5.09938 5.14154 5.44142 5.66371 5.68541 5.80975 6.01319 6.21958 6.42574 6.62973 6.67672 6.86621 6.91960 7.15913 7.35006 7.46462 7.74616 7.83948 7.95676 8.00480 8.28364 8.34880 8.80690 9.41997 10.88932 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.031538 B = 0.006208 C = 0.005786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.600816 B = 4509.100756 C = 4838.359459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.065 3.935 3 Si 0.896 3.104 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.513 4.513 8 H 0.061 0.939 9 C 0.082 3.918 10 H 0.037 0.963 11 C 0.063 3.937 12 N -0.859 5.859 13 C 0.000 4.000 14 C -0.071 4.071 15 C -0.091 4.091 16 C -0.184 4.184 17 S 0.048 5.952 18 C 0.051 3.949 19 N -0.459 5.459 20 C 0.071 3.929 21 C -0.071 4.071 22 H 0.263 0.737 23 H 0.069 0.931 24 H 0.045 0.955 25 H 0.330 0.670 26 H 0.320 0.680 27 H 0.133 0.867 28 H 0.121 0.879 29 H 0.195 0.805 30 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.645 -10.147 -1.337 11.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.137 4.137 3 Si 0.723 3.277 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.552 4.552 8 H 0.079 0.921 9 C 0.063 3.937 10 H 0.055 0.945 11 C -0.066 4.066 12 N -0.386 5.386 13 C -0.002 4.002 14 C -0.092 4.092 15 C -0.114 4.114 16 C -0.302 4.302 17 S 0.299 5.701 18 C -0.254 4.254 19 N -0.171 5.171 20 C -0.047 4.047 21 C -0.093 4.093 22 H 0.073 0.927 23 H 0.087 0.913 24 H 0.063 0.937 25 H 0.141 0.859 26 H 0.130 0.870 27 H 0.151 0.849 28 H 0.139 0.861 29 H 0.212 0.788 30 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 6.672 -10.996 -1.289 12.926 hybrid contribution -0.919 2.121 0.135 2.315 sum 5.753 -8.875 -1.155 10.639 Atomic orbital electron populations 1.69849 1.05947 1.26947 1.50042 1.24968 0.94902 0.99247 0.94628 0.86586 0.79585 0.82663 0.78835 1.20096 1.21224 1.20116 1.21050 0.93100 0.89495 1.51525 0.92102 1.17929 0.91202 0.89430 0.95139 0.94501 1.22043 0.96169 0.90258 0.98174 1.59021 1.29847 1.43622 1.06108 1.19996 0.94708 0.94536 0.90996 1.21142 0.93432 0.95896 0.98702 1.20239 1.00304 0.94247 0.96595 1.23532 1.02639 1.01575 1.02414 1.83604 1.39589 1.23874 1.23066 1.27831 0.95988 1.01946 0.99663 1.66140 1.18695 1.03007 1.29295 1.19190 0.98840 0.96286 0.90374 1.20272 0.97465 0.91842 0.99697 0.92698 0.91288 0.93664 0.85895 0.86980 0.84872 0.86136 0.78802 0.85698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.78 11.29 55.43 0.63 -23.15 16 2 C 0.06 1.67 5.29 -17.82 -0.09 1.58 16 3 Si 0.90 20.33 29.54 -169.99 -5.02 15.31 16 4 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.51 -13.16 8.23 -34.44 -0.28 -13.44 16 8 H 0.06 1.56 7.60 -52.49 -0.40 1.16 16 9 C 0.08 1.92 2.08 -92.92 -0.19 1.73 16 10 H 0.04 0.94 7.82 -51.93 -0.41 0.54 16 11 C 0.06 1.40 5.90 -3.82 -0.02 1.37 16 12 N -0.86 -16.31 9.34 -10.37 -0.10 -16.40 16 13 C 0.00 0.01 4.42 -105.16 -0.46 -0.46 16 14 C -0.07 -1.36 8.62 -39.59 -0.34 -1.70 16 15 C -0.09 -1.58 10.07 -39.38 -0.40 -1.97 16 16 C -0.18 -3.27 6.56 -38.54 -0.25 -3.53 16 17 S 0.05 0.66 23.17 -107.50 -2.49 -1.83 16 18 C 0.05 0.71 12.10 51.14 0.62 1.33 16 19 N -0.46 -8.24 10.57 -12.96 -0.14 -8.38 16 20 C 0.07 1.38 7.00 -84.96 -0.59 0.79 16 21 C -0.07 -1.48 9.66 -39.29 -0.38 -1.86 16 22 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 23 H 0.07 1.70 5.95 -51.93 -0.31 1.39 16 24 H 0.04 0.99 7.18 -51.93 -0.37 0.61 16 25 H 0.33 6.16 8.99 -39.29 -0.35 5.81 16 26 H 0.32 5.35 9.08 -39.29 -0.36 4.99 16 27 H 0.13 2.48 7.50 -52.49 -0.39 2.09 16 28 H 0.12 1.73 8.06 -52.49 -0.42 1.31 16 29 H 0.20 1.83 8.06 -52.49 -0.42 1.41 16 30 H 0.13 2.54 7.88 -52.49 -0.41 2.13 16 LS Contribution 271.59 15.07 4.09 4.09 Total: -1.00 -27.97 271.59 -8.41 -36.38 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -2.98 Total: 10.14 kcal Atomic # 6 Polarization: -13.75 SS G_CDS: -2.40 Total: -16.16 kcal Atomic # 7 Polarization: -48.32 SS G_CDS: 0.39 Total: -47.93 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Atomic # 16 Polarization: 0.66 SS G_CDS: -2.49 Total: -1.83 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -27.97 -8.41 -36.38 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261050707.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.177 kcal (2) G-P(sol) polarization free energy of solvation -27.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds