Wall clock time and date at job start Mon Mar 30 2020 06:14:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36083 * 116.99978 * 2 1 4 4 C 1.39546 * 119.91135 * 273.57446 * 3 2 1 5 5 O 1.34883 * 133.04546 * 359.96908 * 4 3 2 6 6 C 1.34488 * 110.94857 * 180.02562 * 5 4 3 7 7 C 1.33888 * 110.27074 * 0.02562 * 6 5 4 8 8 C 1.40919 * 119.79357 * 179.97438 * 4 3 2 9 9 C 1.38783 * 120.52560 * 359.72077 * 8 4 3 10 10 C 1.40444 * 119.53694 * 0.50370 * 9 8 4 11 11 C 1.41186 * 120.14361 * 179.79589 * 10 9 8 12 12 H 1.07998 * 120.00225 * 150.00588 * 11 10 9 13 13 C 1.39863 * 119.99890 * 329.72292 * 11 10 9 14 14 N 1.30921 * 119.99822 * 162.05901 * 13 11 10 15 15 Si 1.86793 * 120.00287 * 342.05931 * 13 11 10 16 16 H 1.48503 * 109.46936 * 95.10971 * 15 13 11 17 17 H 1.48496 * 109.47158 * 215.10985 * 15 13 11 18 18 H 1.48502 * 109.47347 * 335.11132 * 15 13 11 19 19 C 1.38139 * 119.91343 * 93.54625 * 3 2 1 20 20 O 1.35834 * 119.86892 * 0.02562 * 19 3 2 21 21 C 1.42906 * 117.00466 * 85.04826 * 20 19 3 22 22 H 1.08995 * 109.47037 * 184.47619 * 1 2 3 23 23 H 1.08997 * 109.47207 * 304.47620 * 1 2 3 24 24 H 1.09002 * 109.47026 * 64.47516 * 1 2 3 25 25 H 1.07998 * 124.86310 * 180.02562 * 6 5 4 26 26 H 1.08003 * 126.90225 * 179.97438 * 7 6 5 27 27 H 1.08002 * 120.23277 * 180.28162 * 9 8 4 28 28 H 0.96994 * 120.00119 * 180.02562 * 14 13 11 29 29 H 1.09002 * 109.46761 * 55.60363 * 21 20 19 30 30 H 1.08999 * 109.47209 * 175.60583 * 21 20 19 31 31 H 1.08999 * 109.46447 * 295.60587 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0468 1.2125 0.0000 4 6 2.2955 1.8668 -1.2072 5 8 2.0449 1.5508 -2.4943 6 6 2.4803 2.5185 -3.3206 7 6 3.0366 3.5130 -2.6177 8 6 2.9349 3.1225 -1.2043 9 6 3.3147 3.7174 -0.0093 10 6 3.0672 3.0541 1.2036 11 6 3.4520 3.6456 2.4265 12 1 2.8891 3.4422 3.3255 13 6 4.5657 4.4903 2.4749 14 7 4.7254 5.3056 3.4866 15 14 5.8253 4.4551 1.0959 16 1 5.5082 5.5182 0.1087 17 1 7.1801 4.6887 1.6570 18 1 5.7887 3.1304 0.4257 19 6 2.4255 1.7927 1.1951 20 8 2.1803 1.1504 2.3666 21 6 3.1453 0.1861 2.7922 22 1 -0.3633 -1.0245 0.0802 23 1 -0.3633 0.5817 0.8471 24 1 -0.3633 0.4428 -0.9274 25 1 2.3937 2.4964 -4.3969 26 1 3.4720 4.4200 -3.0103 27 1 3.8004 4.6821 -0.0123 28 1 5.4976 5.8917 3.5200 29 1 4.1279 0.6550 2.8464 30 1 2.8695 -0.1943 3.7757 31 1 3.1746 -0.6377 2.0791 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261051804.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:43 Heat of formation + Delta-G solvation = -47.776306 kcal Electronic energy + Delta-G solvation = -18288.390412 eV Core-core repulsion = 15309.368389 eV Total energy + Delta-G solvation = -2979.022023 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.088 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.42040 -38.83825 -36.98460 -35.55561 -33.39846 -31.40615 -29.92013 -28.17259 -26.66227 -25.64540 -25.13438 -21.97766 -20.82291 -20.41778 -18.03230 -17.25389 -16.80976 -15.98491 -15.55424 -15.40954 -14.75745 -14.60667 -14.35586 -14.05235 -13.62203 -13.04486 -12.81369 -12.39706 -12.23070 -11.80477 -11.64561 -11.15438 -11.04723 -10.76619 -10.50377 -10.22599 -9.94535 -9.64936 -9.36319 -9.15532 -8.75508 -7.58896 -7.17225 -7.06326 -4.57014 1.64526 2.32774 2.92930 3.05799 3.15776 3.24924 3.57864 3.89252 4.07783 4.49089 4.75890 5.15812 5.35802 5.62210 5.72864 5.78518 5.96060 5.97801 6.05616 6.11006 6.17357 6.27899 6.35626 6.43283 6.76556 6.92086 7.04753 7.22734 7.36386 7.58344 7.71137 8.11056 8.19378 8.30715 8.63321 8.74706 9.94670 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.019977 B = 0.011432 C = 0.007880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.308646 B = 2448.689760 C = 3552.512619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.335 6.335 3 C 0.113 3.887 4 C -0.067 4.067 5 O -0.200 6.200 6 C -0.006 4.006 7 C -0.231 4.231 8 C -0.070 4.070 9 C -0.214 4.214 10 C 0.077 3.923 11 C -0.423 4.423 12 H 0.101 0.899 13 C 0.084 3.916 14 N -0.797 5.797 15 Si 0.906 3.094 16 H -0.267 1.267 17 H -0.288 1.288 18 H -0.244 1.244 19 C 0.028 3.972 20 O -0.316 6.316 21 C 0.040 3.960 22 H 0.083 0.917 23 H 0.047 0.953 24 H 0.038 0.962 25 H 0.194 0.806 26 H 0.145 0.855 27 H 0.113 0.887 28 H 0.288 0.712 29 H 0.045 0.955 30 H 0.078 0.922 31 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.037 -4.732 -6.841 8.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.252 6.252 3 C 0.069 3.931 4 C -0.113 4.113 5 O -0.102 6.102 6 C -0.072 4.072 7 C -0.251 4.251 8 C -0.071 4.071 9 C -0.234 4.234 10 C 0.073 3.927 11 C -0.450 4.450 12 H 0.119 0.881 13 C -0.136 4.136 14 N -0.420 5.420 15 Si 0.733 3.267 16 H -0.193 1.193 17 H -0.215 1.215 18 H -0.167 1.167 19 C -0.017 4.017 20 O -0.233 6.233 21 C -0.055 4.055 22 H 0.102 0.898 23 H 0.066 0.934 24 H 0.057 0.943 25 H 0.210 0.790 26 H 0.163 0.837 27 H 0.131 0.869 28 H 0.098 0.902 29 H 0.063 0.937 30 H 0.097 0.903 31 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -2.121 -4.945 -6.558 8.483 hybrid contribution 0.783 0.490 -0.731 1.178 sum -1.339 -4.456 -7.289 8.647 Atomic orbital electron populations 1.22855 0.80064 1.02002 1.00336 1.85948 1.19293 1.25700 1.94289 1.17612 1.01341 0.86059 0.88070 1.19338 1.11698 0.97619 0.82679 1.83880 1.68838 1.42685 1.14841 1.23624 0.99923 0.88218 0.95465 1.22414 1.08910 1.01602 0.92166 1.19562 1.00275 0.93972 0.93246 1.20279 1.12144 1.00892 0.90061 1.17670 0.91559 0.90098 0.93371 1.19323 1.10121 1.20012 0.95572 0.88083 1.26187 0.99063 0.91797 0.96563 1.69717 1.27514 1.14921 1.29879 0.86352 0.78209 0.81639 0.80547 1.19305 1.21537 1.16741 1.18436 1.08309 0.92052 0.82915 1.85924 1.46089 1.55030 1.36225 1.22831 0.93020 0.90860 0.98753 0.89826 0.93439 0.94338 0.78957 0.83744 0.86930 0.90186 0.93673 0.90325 0.94461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.71 11.13 101.05 1.13 1.83 16 2 O -0.34 -7.13 10.17 -35.53 -0.36 -7.49 16 3 C 0.11 2.65 5.73 -39.13 -0.22 2.43 16 4 C -0.07 -1.55 7.35 -38.08 -0.28 -1.83 16 5 O -0.20 -4.12 10.58 3.59 0.04 -4.08 16 6 C -0.01 -0.11 11.95 29.20 0.35 0.24 16 7 C -0.23 -4.34 11.14 -37.57 -0.42 -4.76 16 8 C -0.07 -1.61 6.37 -105.14 -0.67 -2.28 16 9 C -0.21 -5.26 7.21 -38.55 -0.28 -5.54 16 10 C 0.08 1.97 5.11 -106.69 -0.54 1.42 16 11 C -0.42 -11.26 9.17 -37.86 -0.35 -11.60 16 12 H 0.10 2.86 7.88 -52.49 -0.41 2.45 16 13 C 0.08 2.15 5.40 -17.33 -0.09 2.06 16 14 N -0.80 -20.62 13.93 55.54 0.77 -19.84 16 15 Si 0.91 20.42 24.52 -169.99 -4.17 16.26 16 16 H -0.27 -5.83 6.70 56.52 0.38 -5.45 16 17 H -0.29 -6.21 7.11 56.52 0.40 -5.81 16 18 H -0.24 -5.73 6.87 56.52 0.39 -5.34 16 19 C 0.03 0.69 5.75 -38.36 -0.22 0.47 16 20 O -0.32 -7.31 9.48 -34.66 -0.33 -7.64 16 21 C 0.04 0.77 11.13 101.05 1.12 1.89 16 22 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 23 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.19 2.16 8.06 -52.49 -0.42 1.74 16 26 H 0.14 2.29 8.06 -52.48 -0.42 1.86 16 27 H 0.11 2.72 4.75 -52.49 -0.25 2.47 16 28 H 0.29 6.71 8.30 -40.82 -0.34 6.37 16 29 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 272.72 15.07 4.11 4.11 Total: -1.00 -29.62 272.72 -3.63 -33.25 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: -3.22 Total: 1.12 kcal Atomic # 6 Polarization: -15.19 SS G_CDS: -0.48 Total: -15.67 kcal Atomic # 7 Polarization: -20.62 SS G_CDS: 0.77 Total: -19.84 kcal Atomic # 8 Polarization: -18.56 SS G_CDS: -0.65 Total: -19.22 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -4.17 Total: 16.26 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -29.62 -3.63 -33.25 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261051804.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.531 kcal (2) G-P(sol) polarization free energy of solvation -29.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds