Wall clock time and date at job start Mon Mar 30 2020 06:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.27929 * 124.23942 * 2 1 4 4 C 1.34660 * 117.84279 * 180.02562 * 3 2 1 5 5 C 1.40969 * 129.69016 * 179.97438 * 4 3 2 6 6 C 1.36173 * 120.42550 * 180.02562 * 5 4 3 7 7 C 1.50703 * 119.60793 * 179.97438 * 6 5 4 8 8 H 1.08994 * 109.47874 * 340.00426 * 7 6 5 9 9 N 1.46902 * 109.47139 * 220.00072 * 7 6 5 10 10 C 1.50708 * 109.46925 * 100.00245 * 7 6 5 11 11 H 1.07991 * 119.99789 * 0.02562 * 10 7 6 12 12 C 1.37877 * 120.00008 * 179.97438 * 10 7 6 13 13 N 1.31514 * 120.00089 * 180.02562 * 12 10 7 14 14 Si 1.86798 * 119.99938 * 0.02562 * 12 10 7 15 15 H 1.48506 * 109.47297 * 269.99556 * 14 12 10 16 16 H 1.48503 * 109.47261 * 149.99737 * 14 12 10 17 17 H 1.48500 * 109.47454 * 29.99730 * 14 12 10 18 18 C 1.38784 * 120.78404 * 0.25803 * 6 5 4 19 19 C 1.37662 * 120.06220 * 359.48421 * 18 6 5 20 20 C 1.39336 * 119.94848 * 0.51053 * 19 18 6 21 21 S 1.70647 * 124.23400 * 180.02562 * 2 1 3 22 22 H 1.08994 * 109.47354 * 180.02562 * 1 2 3 23 23 H 1.09007 * 109.47070 * 300.00782 * 1 2 3 24 24 H 1.09004 * 109.47350 * 60.00220 * 1 2 3 25 25 H 1.08005 * 119.78406 * 359.97438 * 5 4 3 26 26 H 1.00908 * 110.99828 * 176.04775 * 9 7 6 27 27 H 1.00903 * 110.99961 * 300.00195 * 9 7 6 28 28 H 0.96997 * 119.99848 * 180.02562 * 13 12 10 29 29 H 1.08002 * 119.97110 * 179.71805 * 18 6 5 30 30 H 1.07997 * 120.02574 * 180.25293 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2268 1.0576 0.0000 4 6 3.5650 0.9076 -0.0005 5 6 4.5806 1.8853 -0.0011 6 6 5.8917 1.5177 -0.0022 7 6 6.9624 2.5783 -0.0034 8 1 6.5407 3.5200 -0.3547 9 7 8.0562 2.1689 -0.8945 10 6 7.4941 2.7569 1.3954 11 1 7.0968 2.1616 2.2042 12 6 8.4885 3.6795 1.6424 13 7 8.9529 3.8350 2.8629 14 14 9.1761 4.7086 0.2433 15 1 10.3282 4.0015 -0.3716 16 1 9.6255 6.0225 0.7696 17 1 8.1215 4.9200 -0.7806 18 6 6.2538 0.1779 -0.0080 19 6 5.2836 -0.7987 -0.0021 20 6 3.9368 -0.4412 -0.0010 21 16 2.4670 -1.4108 -0.0006 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5140 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 4.3169 2.9327 -0.0017 26 1 8.7568 2.8919 -0.9628 27 1 8.4641 1.2978 -0.5897 28 1 9.6522 4.4843 3.0367 29 1 7.2978 -0.0988 -0.0133 30 1 5.5660 -1.8411 -0.0025 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261057667.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:09 Heat of formation + Delta-G solvation = 33.425763 kcal Electronic energy + Delta-G solvation = -15140.856535 eV Core-core repulsion = 12640.401320 eV Total energy + Delta-G solvation = -2500.455215 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.068 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.40825 -38.83238 -36.31079 -33.99583 -32.35029 -31.87530 -28.97660 -28.18282 -25.45723 -23.57021 -23.28435 -21.01339 -19.17706 -19.14009 -17.49808 -17.46279 -16.65076 -16.22277 -16.06807 -15.37711 -14.91131 -14.67243 -14.33974 -14.19497 -13.93576 -13.62195 -13.33318 -13.01013 -12.84543 -12.53749 -12.32228 -12.11409 -11.83241 -11.53397 -11.01777 -10.92802 -10.62279 -9.61660 -9.39649 -8.95099 -8.42110 -6.51785 -0.52612 0.22285 0.29818 0.69489 1.23430 1.32898 1.39870 1.41768 2.19878 2.72642 2.87708 2.96314 3.63852 3.79591 4.11750 4.22721 4.26180 4.33786 4.50682 4.67578 4.68005 4.81751 4.98809 5.03301 5.22197 5.24739 5.32754 5.67029 5.78674 6.01214 6.33524 6.52704 6.65239 6.68296 7.15156 8.73988 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.043248 B = 0.005552 C = 0.005362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.268761 B = 5042.225945 C = 5220.820574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.084 3.916 3 N -0.507 5.507 4 C 0.066 3.934 5 C -0.095 4.095 6 C -0.026 4.026 7 C 0.216 3.784 8 H 0.043 0.957 9 N -0.836 5.836 10 C -0.549 4.549 11 H 0.032 0.968 12 C 0.020 3.980 13 N -0.936 5.936 14 Si 0.938 3.062 15 H -0.249 1.249 16 H -0.292 1.292 17 H -0.249 1.249 18 C -0.091 4.091 19 C -0.071 4.071 20 C -0.214 4.214 21 S 0.134 5.866 22 H 0.110 0.890 23 H 0.097 0.903 24 H 0.100 0.900 25 H 0.119 0.881 26 H 0.319 0.681 27 H 0.341 0.659 28 H 0.270 0.730 29 H 0.144 0.856 30 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.657 -11.114 -8.243 18.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.200 4.200 3 N -0.223 5.223 4 C -0.052 4.052 5 C -0.117 4.117 6 C -0.029 4.029 7 C 0.106 3.894 8 H 0.060 0.940 9 N -0.370 5.370 10 C -0.589 4.589 11 H 0.051 0.949 12 C -0.179 4.179 13 N -0.575 5.575 14 Si 0.763 3.237 15 H -0.174 1.174 16 H -0.219 1.219 17 H -0.173 1.173 18 C -0.112 4.112 19 C -0.093 4.093 20 C -0.333 4.333 21 S 0.388 5.612 22 H 0.128 0.872 23 H 0.116 0.884 24 H 0.119 0.881 25 H 0.137 0.863 26 H 0.135 0.865 27 H 0.155 0.845 28 H 0.079 0.921 29 H 0.162 0.838 30 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -13.656 -11.584 -8.711 19.914 hybrid contribution 1.917 1.828 0.989 2.828 sum -11.740 -9.755 -7.722 17.106 Atomic orbital electron populations 1.20755 0.81777 1.05806 1.05491 1.27529 1.03492 0.90581 0.98421 1.66130 1.04207 1.33132 1.18823 1.19154 0.89260 0.92527 1.04255 1.20169 0.90661 0.98360 1.02511 1.19476 0.93242 0.95643 0.94568 1.18286 0.88766 0.92634 0.89752 0.93953 1.59657 1.14490 1.08097 1.54727 1.21760 1.20543 1.22097 0.94509 0.94946 1.25878 0.96526 0.97309 0.98223 1.70039 1.29082 1.36202 1.22152 0.85953 0.80126 0.78248 0.79392 1.17410 1.21923 1.17315 1.21127 1.00367 0.91431 0.98305 1.20588 0.88475 1.00886 0.99334 1.24041 1.00372 0.96599 1.12241 1.83281 0.93695 1.09394 1.74797 0.87152 0.88416 0.88109 0.86296 0.86516 0.84525 0.92090 0.83834 0.82171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.17 10.46 71.24 0.75 -0.42 16 2 C 0.08 2.18 7.29 88.68 0.65 2.83 16 3 N -0.51 -17.76 10.57 -182.52 -1.93 -19.69 16 4 C 0.07 2.56 7.00 39.78 0.28 2.84 16 5 C -0.10 -4.03 9.64 22.46 0.22 -3.81 16 6 C -0.03 -1.12 4.85 -20.21 -0.10 -1.21 16 7 C 0.22 10.09 2.46 43.43 0.11 10.20 16 8 H 0.04 2.06 7.01 -2.39 -0.02 2.05 16 9 N -0.84 -34.55 8.97 -174.94 -1.57 -36.12 16 10 C -0.55 -30.66 9.28 25.60 0.24 -30.43 16 11 H 0.03 2.05 7.98 -2.92 -0.02 2.02 16 12 C 0.02 1.14 5.47 84.65 0.46 1.61 16 13 N -0.94 -56.87 13.96 21.45 0.30 -56.57 16 14 Si 0.94 42.19 24.61 68.60 1.69 43.87 16 15 H -0.25 -10.19 7.01 99.48 0.70 -9.49 16 16 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 17 H -0.25 -10.76 6.54 99.48 0.65 -10.11 16 18 C -0.09 -3.32 9.27 22.26 0.21 -3.11 16 19 C -0.07 -2.22 10.07 22.40 0.23 -2.00 16 20 C -0.21 -7.13 6.56 22.94 0.15 -6.98 16 21 S 0.13 3.22 23.08 -56.49 -1.30 1.92 16 22 H 0.11 0.97 8.11 -2.39 -0.02 0.95 16 23 H 0.10 1.35 8.14 -2.38 -0.02 1.34 16 24 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 25 H 0.12 5.05 7.99 -2.91 -0.02 5.03 16 26 H 0.32 13.19 4.30 -89.69 -0.39 12.80 16 27 H 0.34 13.03 7.30 -89.69 -0.65 12.37 16 28 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 29 H 0.14 4.78 6.62 -2.91 -0.02 4.76 16 30 H 0.16 3.77 8.06 -2.91 -0.02 3.75 16 Total: -1.00 -68.77 266.15 0.44 -68.33 By element: Atomic # 1 Polarization: 28.68 SS G_CDS: 0.08 Total: 28.76 kcal Atomic # 6 Polarization: -33.67 SS G_CDS: 3.18 Total: -30.49 kcal Atomic # 7 Polarization: -109.19 SS G_CDS: -3.20 Total: -112.39 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 1.69 Total: 43.87 kcal Atomic # 16 Polarization: 3.22 SS G_CDS: -1.30 Total: 1.92 kcal Total: -68.77 0.44 -68.33 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261057667.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.755 kcal (2) G-P(sol) polarization free energy of solvation -68.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds