Wall clock time and date at job start Mon Mar 30 2020 05:52:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 H 1.09000 * 109.47017 * 54.99395 * 10 9 7 12 12 N 1.46908 * 109.46833 * 294.99820 * 10 9 7 13 13 C 1.50695 * 109.47310 * 174.99934 * 10 9 7 14 14 C 1.38975 * 119.92112 * 79.99871 * 13 10 9 15 15 C 1.36045 * 121.15475 * 179.97438 * 14 13 10 16 16 C 1.41203 * 120.21113 * 0.02562 * 15 14 13 17 17 C 1.44955 * 130.65729 * 180.02562 * 16 15 14 18 18 N 1.28736 * 117.83290 * 179.97438 * 17 16 15 19 19 S 1.69396 * 108.98123 * 359.97438 * 18 17 16 20 20 C 1.40805 * 117.79407 * 359.97438 * 16 15 14 21 21 C 1.36714 * 119.92176 * 259.72314 * 13 10 9 22 22 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 24 24 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 25 25 H 1.00902 * 111.00072 * 299.99814 * 12 10 9 26 26 H 1.00901 * 110.99845 * 63.95541 * 12 10 9 27 27 H 1.07995 * 119.42650 * 359.95778 * 14 13 10 28 28 H 1.08004 * 119.89378 * 179.97438 * 15 14 13 29 29 H 1.08002 * 121.08706 * 359.95555 * 17 16 15 30 30 H 1.07999 * 120.12300 * 359.97438 * 21 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 1 2.9292 -3.5590 0.8318 12 7 3.0083 -3.6484 -1.2657 13 6 1.4957 -4.9642 0.1075 14 6 0.8915 -5.5204 -1.0137 15 6 0.2092 -6.6948 -0.9359 16 6 0.1024 -7.3741 0.2974 17 6 -0.5584 -8.6191 0.6357 18 7 -0.4998 -9.0178 1.8583 19 16 0.3901 -7.8948 2.7620 20 6 0.7211 -6.7949 1.4218 21 6 1.4165 -5.5984 1.3161 22 1 -0.4850 0.8401 -0.0004 23 1 0.6242 -2.5609 0.8844 24 1 0.6244 -2.5529 -0.8956 25 1 2.3960 -3.7427 -2.0622 26 1 3.5700 -2.8134 -1.3381 27 1 0.9646 -5.0113 -1.9633 28 1 -0.2529 -7.1085 -1.8201 29 1 -1.0830 -9.1935 -0.1135 30 1 1.8904 -5.1682 2.1860 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261058078.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:24 Heat of formation + Delta-G solvation = 36.778656 kcal Electronic energy + Delta-G solvation = -14976.785978 eV Core-core repulsion = 12476.476155 eV Total energy + Delta-G solvation = -2500.309823 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.068 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.81712 -37.16461 -34.84712 -32.51325 -31.05863 -29.78773 -28.07473 -25.19176 -23.49995 -22.69854 -21.49730 -19.89596 -17.93863 -16.82503 -15.82735 -15.68051 -15.35297 -14.70890 -14.24357 -13.98947 -13.72944 -13.62330 -12.94466 -12.56703 -12.20197 -11.91141 -11.77717 -11.38109 -11.01413 -10.74642 -10.69464 -10.45401 -10.32260 -10.01322 -9.74785 -9.30322 -8.64515 -8.50833 -7.90152 -7.72956 -6.15614 -4.21046 0.63695 1.39006 1.51458 1.91471 2.26406 3.23645 3.29458 3.30885 3.81534 4.32546 4.45088 4.67917 5.01728 5.20044 5.20707 5.48026 5.55410 5.59775 5.66056 5.99606 6.08581 6.18040 6.39941 6.54147 6.60396 6.82292 6.96326 7.34679 7.45775 7.76607 7.90074 8.09703 8.21376 8.85025 9.44786 10.94898 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.040032 B = 0.004900 C = 0.004732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.271990 B = 5713.043178 C = 5915.282845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.062 3.938 3 Si 0.894 3.106 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.529 4.529 8 H 0.057 0.943 9 C 0.001 3.999 10 C 0.121 3.879 11 H 0.082 0.918 12 N -0.839 5.839 13 C -0.002 4.002 14 C -0.107 4.107 15 C -0.052 4.052 16 C -0.159 4.159 17 C 0.136 3.864 18 N -0.452 5.452 19 S 0.163 5.837 20 C -0.120 4.120 21 C -0.088 4.088 22 H 0.263 0.737 23 H 0.021 0.979 24 H 0.019 0.981 25 H 0.330 0.670 26 H 0.350 0.650 27 H 0.131 0.869 28 H 0.130 0.870 29 H 0.185 0.815 30 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.690 -12.788 -1.261 12.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.141 4.141 3 Si 0.722 3.278 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.567 4.567 8 H 0.076 0.924 9 C -0.037 4.037 10 C 0.009 3.991 11 H 0.100 0.900 12 N -0.368 5.368 13 C -0.007 4.007 14 C -0.127 4.127 15 C -0.075 4.075 16 C -0.170 4.170 17 C -0.075 4.075 18 N -0.262 5.262 19 S 0.315 5.685 20 C -0.240 4.240 21 C -0.112 4.112 22 H 0.073 0.927 23 H 0.039 0.961 24 H 0.038 0.962 25 H 0.141 0.859 26 H 0.164 0.836 27 H 0.149 0.851 28 H 0.148 0.852 29 H 0.202 0.798 30 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 0.751 -14.425 1.144 14.490 hybrid contribution -0.284 2.579 -1.843 3.182 sum 0.467 -11.847 -0.699 11.876 Atomic orbital electron populations 1.69956 1.06141 1.27026 1.49686 1.25012 0.94827 0.99364 0.94887 0.86624 0.79561 0.82914 0.78722 1.20135 1.21261 1.20133 1.21079 0.92880 0.90649 1.52126 0.92439 1.19801 0.94335 0.91488 0.98100 1.20654 0.94834 0.90106 0.93485 0.90009 1.59269 1.27833 1.46135 1.03560 1.20107 0.93443 0.95081 0.92071 1.20613 0.97428 0.95402 0.99269 1.20573 0.97501 0.94425 0.94972 1.20323 1.04509 0.96714 0.95499 1.23849 0.96449 0.93467 0.93690 1.75830 1.18775 1.23466 1.08123 1.84781 1.54678 1.13409 1.15667 1.23357 1.02845 1.00376 0.97411 1.19824 1.00151 0.92572 0.98606 0.92732 0.96060 0.96224 0.85861 0.83649 0.85130 0.85230 0.79838 0.84985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.51 13.29 55.43 0.74 -24.78 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 20.56 29.54 -169.99 -5.02 15.53 16 4 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.53 -13.65 8.55 -34.44 -0.29 -13.94 16 8 H 0.06 1.42 7.14 -52.49 -0.37 1.05 16 9 C 0.00 0.03 4.60 -27.88 -0.13 -0.10 16 10 C 0.12 2.27 2.98 -68.86 -0.21 2.07 16 11 H 0.08 1.57 7.98 -51.93 -0.41 1.16 16 12 N -0.84 -14.29 9.02 -5.65 -0.05 -14.34 16 13 C 0.00 -0.03 4.93 -104.90 -0.52 -0.55 16 14 C -0.11 -1.60 9.18 -40.10 -0.37 -1.97 16 15 C -0.05 -0.68 10.07 -39.24 -0.40 -1.08 16 16 C -0.16 -2.24 6.12 -105.14 -0.64 -2.89 16 17 C 0.14 1.69 11.46 -16.19 -0.19 1.50 16 18 N -0.45 -6.51 11.90 30.96 0.37 -6.14 16 19 S 0.16 2.38 23.86 -107.50 -2.56 -0.19 16 20 C -0.12 -1.87 6.71 -38.41 -0.26 -2.12 16 21 C -0.09 -1.44 9.63 -39.93 -0.38 -1.82 16 22 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 23 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.33 5.25 7.33 -39.29 -0.29 4.96 16 26 H 0.35 6.12 7.90 -39.29 -0.31 5.81 16 27 H 0.13 1.79 6.63 -52.49 -0.35 1.44 16 28 H 0.13 1.23 8.06 -52.48 -0.42 0.81 16 29 H 0.19 1.53 8.06 -52.49 -0.42 1.10 16 30 H 0.13 2.01 8.02 -52.49 -0.42 1.59 16 LS Contribution 274.33 15.07 4.13 4.13 Total: -1.00 -29.19 274.33 -8.86 -38.05 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -2.98 Total: 7.06 kcal Atomic # 6 Polarization: -15.86 SS G_CDS: -3.48 Total: -19.33 kcal Atomic # 7 Polarization: -46.31 SS G_CDS: 1.05 Total: -45.26 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.53 kcal Atomic # 16 Polarization: 2.38 SS G_CDS: -2.56 Total: -0.19 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -29.19 -8.86 -38.05 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261058078.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.828 kcal (2) G-P(sol) polarization free energy of solvation -29.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.050 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds