Wall clock time and date at job start Mon Mar 30 2020 05:52:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99909 * 2 1 4 4 H 1.48492 * 109.47304 * 240.00139 * 3 2 1 5 5 H 1.48501 * 109.46914 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46725 * 120.00422 * 3 2 1 7 7 C 1.37878 * 119.99941 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99932 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00040 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.46844 * 180.02562 * 9 7 2 11 11 H 1.09000 * 109.47209 * 305.00066 * 10 9 7 12 12 N 1.46900 * 109.46991 * 65.00516 * 10 9 7 13 13 C 1.50705 * 109.46911 * 185.00016 * 10 9 7 14 14 C 1.38971 * 119.92567 * 280.02627 * 13 10 9 15 15 C 1.36040 * 121.15903 * 180.02562 * 14 13 10 16 16 C 1.41204 * 120.20698 * 359.95579 * 15 14 13 17 17 C 1.44962 * 130.65518 * 180.02562 * 16 15 14 18 18 N 1.28736 * 117.83196 * 179.97438 * 17 16 15 19 19 S 1.69393 * 108.98342 * 359.97438 * 18 17 16 20 20 C 1.40801 * 117.79854 * 0.02562 * 16 15 14 21 21 C 1.36715 * 119.91929 * 100.00261 * 13 10 9 22 22 H 0.96999 * 119.99826 * 359.97438 * 1 2 3 23 23 H 1.08999 * 109.46742 * 60.00990 * 9 7 2 24 24 H 1.09001 * 109.47378 * 300.00432 * 9 7 2 25 25 H 1.00896 * 110.99932 * 296.04457 * 12 10 9 26 26 H 1.00902 * 111.00014 * 59.99770 * 12 10 9 27 27 H 1.08000 * 119.42041 * 0.02562 * 14 13 10 28 28 H 1.07995 * 119.89615 * 179.97438 * 15 14 13 29 29 H 1.08001 * 121.08358 * 0.02562 * 17 16 15 30 30 H 1.07997 * 120.12516 * 0.02562 * 21 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 1 2.9294 -3.5551 -0.8423 12 7 3.0083 -3.6539 1.2548 13 6 1.4959 -4.9637 -0.1244 14 6 0.8912 -5.5246 0.9941 15 6 0.2090 -6.6987 0.9110 16 6 0.1024 -7.3725 -0.3253 17 6 -0.5591 -8.6156 -0.6695 18 7 -0.5009 -9.0084 -1.8941 19 16 0.3883 -7.8810 -2.7928 20 6 0.7214 -6.7883 -1.4470 21 6 1.4122 -5.5896 -1.3369 22 1 -0.4850 0.8401 0.0004 23 1 0.6242 -2.5567 -0.8904 24 1 0.6246 -2.5571 0.8896 25 1 3.5700 -2.8192 1.3311 26 1 2.3960 -3.7517 2.0507 27 1 0.9641 -5.0196 1.9460 28 1 -0.2528 -7.1165 1.7933 29 1 -1.0843 -9.1929 0.0770 30 1 1.8823 -5.1533 -2.2058 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261058082.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:26 Heat of formation + Delta-G solvation = 18.291156 kcal Electronic energy + Delta-G solvation = -14977.764722 eV Core-core repulsion = 12476.653221 eV Total energy + Delta-G solvation = -2501.111501 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.068 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.98088 -38.42501 -36.29499 -34.42505 -32.20858 -31.01218 -29.89931 -26.69592 -24.93100 -23.94524 -22.81951 -21.26406 -19.12998 -18.66921 -17.12556 -16.85234 -16.67882 -16.60414 -15.40119 -15.17706 -15.00504 -14.76637 -14.55384 -14.20303 -13.97494 -13.26185 -13.02861 -12.95458 -12.69701 -12.39831 -12.20710 -11.88199 -11.71306 -11.49931 -11.21771 -10.86912 -10.60263 -9.86670 -9.34601 -8.91417 -8.21733 -6.33610 -0.48797 0.24227 0.37867 0.84670 1.18920 1.41886 1.43172 1.50877 2.39250 2.65169 3.12258 3.39340 3.61237 3.72266 4.13251 4.21821 4.31515 4.42451 4.60140 4.71445 4.81714 4.92590 4.99648 5.19131 5.38517 5.44317 5.54169 5.66933 5.75041 5.81755 6.14854 6.37859 6.73229 6.82607 7.36724 8.89091 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.039971 B = 0.004902 C = 0.004733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.334096 B = 5710.289162 C = 5914.180172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.005 3.995 3 Si 0.961 3.039 4 H -0.271 1.271 5 H -0.289 1.289 6 H -0.263 1.263 7 C -0.537 4.537 8 H 0.067 0.933 9 C 0.011 3.989 10 C 0.136 3.864 11 H 0.073 0.927 12 N -0.826 5.826 13 C -0.022 4.022 14 C -0.120 4.120 15 C -0.035 4.035 16 C -0.162 4.162 17 C 0.152 3.848 18 N -0.468 5.468 19 S 0.147 5.853 20 C -0.138 4.138 21 C -0.102 4.102 22 H 0.262 0.738 23 H -0.014 1.014 24 H 0.000 1.000 25 H 0.348 0.652 26 H 0.338 0.662 27 H 0.142 0.858 28 H 0.175 0.825 29 H 0.233 0.767 30 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.895 -13.882 2.601 14.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.193 4.193 3 Si 0.786 3.214 4 H -0.196 1.196 5 H -0.215 1.215 6 H -0.188 1.188 7 C -0.575 4.575 8 H 0.085 0.915 9 C -0.028 4.028 10 C 0.024 3.976 11 H 0.091 0.909 12 N -0.356 5.356 13 C -0.027 4.027 14 C -0.140 4.140 15 C -0.057 4.057 16 C -0.174 4.174 17 C -0.058 4.058 18 N -0.278 5.278 19 S 0.299 5.701 20 C -0.258 4.258 21 C -0.126 4.126 22 H 0.071 0.929 23 H 0.004 0.996 24 H 0.019 0.981 25 H 0.161 0.839 26 H 0.151 0.849 27 H 0.160 0.840 28 H 0.193 0.807 29 H 0.249 0.751 30 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 0.975 -15.522 0.189 15.554 hybrid contribution -0.391 2.814 1.433 3.182 sum 0.584 -12.708 1.622 12.825 Atomic orbital electron populations 1.70094 1.07861 1.27785 1.51348 1.25901 0.95574 1.03169 0.94683 0.85551 0.78219 0.78362 0.79218 1.19565 1.21491 1.18755 1.21521 0.93555 0.91599 1.50823 0.91468 1.19665 0.94534 0.93210 0.95356 1.20311 0.93607 0.89652 0.94048 0.90870 1.59251 1.27424 1.45702 1.03185 1.19983 0.94717 0.94747 0.93300 1.20811 0.97814 0.96399 0.99002 1.20986 0.95686 0.93065 0.95951 1.20735 1.03954 0.97286 0.95435 1.24460 0.94937 0.92660 0.93777 1.75926 1.19454 1.23345 1.09088 1.84798 1.55421 1.13890 1.15997 1.23507 1.03326 1.00370 0.98620 1.19850 1.00941 0.93325 0.98444 0.92879 0.99606 0.98139 0.83898 0.84928 0.84047 0.80741 0.75110 0.85290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.52 13.29 21.45 0.28 -54.24 16 2 C 0.01 0.28 5.46 84.65 0.46 0.74 16 3 Si 0.96 42.19 29.54 68.60 2.03 44.22 16 4 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 5 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 6 H -0.26 -10.91 7.11 99.48 0.71 -10.21 16 7 C -0.54 -27.98 8.55 25.60 0.22 -27.76 16 8 H 0.07 3.30 7.15 -2.91 -0.02 3.28 16 9 C 0.01 0.54 4.60 29.85 0.14 0.68 16 10 C 0.14 5.18 2.98 44.17 0.13 5.32 16 11 H 0.07 2.88 7.98 -2.39 -0.02 2.86 16 12 N -0.83 -27.63 9.02 -171.79 -1.55 -29.18 16 13 C -0.02 -0.76 4.93 -20.04 -0.10 -0.86 16 14 C -0.12 -3.39 9.18 21.93 0.20 -3.19 16 15 C -0.04 -0.80 10.07 22.49 0.23 -0.57 16 16 C -0.16 -4.16 6.12 -20.20 -0.12 -4.28 16 17 C 0.15 3.24 11.46 86.87 1.00 4.23 16 18 N -0.47 -12.50 11.90 -55.94 -0.67 -13.17 16 19 S 0.15 4.23 23.86 -56.49 -1.35 2.88 16 20 C -0.14 -4.23 6.71 23.03 0.15 -4.07 16 21 C -0.10 -3.39 9.63 22.04 0.21 -3.18 16 22 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 23 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 24 H 0.00 0.01 8.14 -2.39 -0.02 0.00 16 25 H 0.35 11.91 7.90 -89.70 -0.71 11.20 16 26 H 0.34 10.42 7.33 -89.69 -0.66 9.76 16 27 H 0.14 3.60 6.63 -2.91 -0.02 3.59 16 28 H 0.18 2.36 8.06 -2.91 -0.02 2.34 16 29 H 0.23 2.57 8.06 -2.91 -0.02 2.54 16 30 H 0.13 4.15 8.02 -2.91 -0.02 4.13 16 Total: -1.00 -63.83 274.34 1.08 -62.75 By element: Atomic # 1 Polarization: 19.87 SS G_CDS: -0.18 Total: 19.69 kcal Atomic # 6 Polarization: -35.47 SS G_CDS: 2.52 Total: -32.95 kcal Atomic # 7 Polarization: -94.65 SS G_CDS: -1.93 Total: -96.59 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.22 kcal Atomic # 16 Polarization: 4.23 SS G_CDS: -1.35 Total: 2.88 kcal Total: -63.83 1.08 -62.75 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261058082.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.045 kcal (2) G-P(sol) polarization free energy of solvation -63.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds