Wall clock time and date at job start Mon Mar 30 2020 05:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.28736 * 121.08059 * 2 1 4 4 S 1.69398 * 108.98151 * 180.02562 * 3 2 1 5 5 C 1.76509 * 96.12181 * 359.97438 * 4 3 2 6 6 C 1.38780 * 133.55806 * 180.02562 * 5 4 3 7 7 C 1.36705 * 119.76114 * 179.97438 * 6 5 4 8 8 C 1.38978 * 120.15027 * 0.02562 * 7 6 5 9 9 C 1.36034 * 121.16059 * 359.97438 * 8 7 6 10 10 C 1.50702 * 119.89914 * 179.97438 * 9 8 7 11 11 H 1.08995 * 109.47220 * 215.26943 * 10 9 8 12 12 N 1.46899 * 109.47139 * 95.26148 * 10 9 8 13 13 C 1.50707 * 109.46628 * 335.26571 * 10 9 8 14 14 H 1.07998 * 120.00369 * 5.20143 * 13 10 9 15 15 C 1.37874 * 119.99673 * 185.21061 * 13 10 9 16 16 N 1.31514 * 119.99667 * 179.97438 * 15 13 10 17 17 Si 1.86796 * 120.00150 * 359.97438 * 15 13 10 18 18 H 1.48500 * 109.47379 * 90.00569 * 17 15 13 19 19 H 1.48506 * 109.47324 * 210.00297 * 17 15 13 20 20 H 1.48499 * 109.47191 * 330.00221 * 17 15 13 21 21 C 1.40816 * 105.51690 * 359.74267 * 5 4 3 22 22 H 1.08998 * 109.46945 * 96.24510 * 1 2 3 23 23 H 1.09004 * 109.46935 * 216.24620 * 1 2 3 24 24 H 1.08997 * 109.47259 * 336.24268 * 1 2 3 25 25 H 1.08006 * 120.11760 * 359.95327 * 6 5 4 26 26 H 1.08008 * 119.93002 * 179.97438 * 7 6 5 27 27 H 1.08004 * 119.41903 * 180.02562 * 8 7 6 28 28 H 1.00893 * 111.00179 * 292.56567 * 12 10 9 29 29 H 1.00896 * 110.99691 * 56.52805 * 12 10 9 30 30 H 0.97005 * 119.99664 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1716 1.1025 0.0000 4 16 3.8279 0.7475 -0.0007 5 6 3.6441 -1.0080 -0.0003 6 6 4.5448 -2.0639 0.0000 7 6 4.0823 -3.3503 0.0008 8 6 2.7152 -3.6006 0.0010 9 6 1.8132 -2.5824 0.0007 10 6 0.3372 -2.8864 0.0003 11 1 -0.1878 -2.1379 -0.5932 12 7 -0.1685 -2.8608 1.3792 13 6 0.1058 -4.2517 -0.5944 14 1 0.9470 -4.8747 -0.8601 15 6 -1.1800 -4.7053 -0.7994 16 7 -1.3819 -5.8966 -1.3188 17 14 -2.6350 -3.6281 -0.3395 18 1 -3.0131 -2.7842 -1.5014 19 1 -3.7848 -4.4862 0.0438 20 1 -2.2641 -2.7573 0.8048 21 6 2.2554 -1.2414 0.0065 22 1 -0.3633 -0.1118 -1.0216 23 1 -0.3633 -0.8288 0.6076 24 1 -0.3633 0.9405 0.4140 25 1 5.6073 -1.8699 -0.0009 26 1 4.7808 -4.1741 0.0006 27 1 2.3628 -4.6215 0.0021 28 1 0.2133 -3.6233 1.9186 29 1 0.0257 -1.9738 1.8191 30 1 -2.2865 -6.2159 -1.4627 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261062766.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:58:21 Heat of formation + Delta-G solvation = 61.459759 kcal Electronic energy + Delta-G solvation = -15811.938083 eV Core-core repulsion = 13312.698513 eV Total energy + Delta-G solvation = -2499.239570 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.068 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.93868 -36.65703 -35.22833 -32.02607 -30.27978 -29.85820 -29.20935 -26.34341 -23.30273 -22.89391 -20.49240 -20.08578 -17.67298 -16.90281 -15.95252 -15.27737 -14.91043 -14.65310 -14.55586 -14.15983 -13.64340 -13.10969 -12.65843 -12.59106 -12.19387 -12.09419 -11.57999 -11.49489 -11.28745 -10.84855 -10.78819 -10.35073 -10.19809 -9.84612 -9.31596 -9.11786 -8.65684 -8.63176 -7.68250 -7.36778 -6.12363 -4.23701 0.76795 1.56086 1.66210 2.04523 2.37288 3.40640 3.52000 3.77841 3.96917 4.56668 4.56892 4.85194 5.18091 5.24206 5.36182 5.48184 5.59969 5.66730 5.74716 5.85733 5.90732 6.22520 6.25847 6.33060 6.56684 6.68559 6.84015 7.12024 7.18671 7.47486 8.03521 8.17300 8.55072 8.84864 9.50528 10.96430 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.029079 B = 0.008596 C = 0.006991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.661368 B = 3256.715047 C = 4004.327739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.173 3.827 3 N -0.454 5.454 4 S 0.138 5.862 5 C -0.129 4.129 6 C -0.105 4.105 7 C -0.079 4.079 8 C -0.111 4.111 9 C -0.009 4.009 10 C 0.206 3.794 11 H 0.059 0.941 12 N -0.831 5.831 13 C -0.532 4.532 14 H 0.080 0.920 15 C 0.088 3.912 16 N -0.894 5.894 17 Si 0.865 3.135 18 H -0.292 1.292 19 H -0.300 1.300 20 H -0.204 1.204 21 C -0.142 4.142 22 H 0.090 0.910 23 H 0.108 0.892 24 H 0.077 0.923 25 H 0.124 0.876 26 H 0.129 0.871 27 H 0.150 0.850 28 H 0.336 0.664 29 H 0.305 0.695 30 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.042 8.043 4.134 12.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.016 4.016 3 N -0.267 5.267 4 S 0.291 5.709 5 C -0.249 4.249 6 C -0.129 4.129 7 C -0.102 4.102 8 C -0.132 4.132 9 C -0.016 4.016 10 C 0.097 3.903 11 H 0.077 0.923 12 N -0.361 5.361 13 C -0.570 4.570 14 H 0.098 0.902 15 C -0.117 4.117 16 N -0.531 5.531 17 Si 0.692 3.308 18 H -0.219 1.219 19 H -0.227 1.227 20 H -0.125 1.125 21 C -0.153 4.153 22 H 0.108 0.892 23 H 0.126 0.874 24 H 0.096 0.904 25 H 0.142 0.858 26 H 0.147 0.853 27 H 0.168 0.832 28 H 0.150 0.850 29 H 0.118 0.882 30 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 8.039 10.059 3.779 13.420 hybrid contribution -0.369 -1.104 0.205 1.182 sum 7.671 8.955 3.984 12.446 Atomic orbital electron populations 1.21210 0.86308 1.04902 1.04764 1.22639 0.98481 0.87166 0.93354 1.75788 1.00851 1.26193 1.23841 1.84521 1.09146 0.97463 1.79743 1.23327 0.96840 0.98708 1.06034 1.19827 0.98046 0.90882 1.04126 1.21168 0.96352 0.95862 0.96781 1.21153 0.91643 1.01418 0.98954 1.20903 1.00435 0.88658 0.91565 1.18797 0.83737 0.99525 0.88240 0.92334 1.60166 1.65177 1.06132 1.04600 1.20935 0.94167 0.99304 1.42600 0.90173 1.24973 0.99494 0.94741 0.92527 1.69931 1.22037 1.18276 1.42808 0.87104 0.80377 0.82111 0.81235 1.21916 1.22686 1.12514 1.20222 0.91148 0.94738 1.09188 0.89193 0.87374 0.90430 0.85768 0.85293 0.83231 0.85007 0.88151 0.92590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.69 8.58 36.01 0.31 -1.38 16 2 C 0.17 2.99 6.88 -81.23 -0.56 2.43 16 3 N -0.45 -7.95 11.84 34.00 0.40 -7.54 16 4 S 0.14 2.19 23.86 -107.50 -2.56 -0.38 16 5 C -0.13 -2.17 6.71 -38.41 -0.26 -2.42 16 6 C -0.11 -1.54 10.02 -39.94 -0.40 -1.94 16 7 C -0.08 -1.17 10.00 -39.86 -0.40 -1.56 16 8 C -0.11 -1.96 8.89 -40.10 -0.36 -2.32 16 9 C -0.01 -0.17 5.27 -104.29 -0.55 -0.72 16 10 C 0.21 4.23 1.43 -70.01 -0.10 4.13 16 11 H 0.06 1.24 4.57 -51.93 -0.24 1.00 16 12 N -0.83 -15.45 6.03 -6.65 -0.04 -15.50 16 13 C -0.53 -13.36 8.68 -34.44 -0.30 -13.66 16 14 H 0.08 2.14 5.82 -52.49 -0.31 1.83 16 15 C 0.09 2.35 5.47 -17.82 -0.10 2.26 16 16 N -0.89 -25.91 13.96 55.43 0.77 -25.13 16 17 Si 0.87 20.15 26.88 -169.99 -4.57 15.59 16 18 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 19 H -0.30 -7.28 7.11 56.52 0.40 -6.88 16 20 H -0.20 -4.33 5.47 56.52 0.31 -4.02 16 21 C -0.14 -2.55 6.01 -105.14 -0.63 -3.19 16 22 H 0.09 1.35 7.85 -51.93 -0.41 0.94 16 23 H 0.11 1.71 3.69 -51.93 -0.19 1.52 16 24 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 25 H 0.12 1.46 8.06 -52.48 -0.42 1.03 16 26 H 0.13 1.48 8.06 -52.48 -0.42 1.06 16 27 H 0.15 2.80 5.90 -52.48 -0.31 2.49 16 28 H 0.34 6.16 8.94 -39.30 -0.35 5.81 16 29 H 0.31 5.01 7.26 -39.29 -0.29 4.72 16 30 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 256.79 15.07 3.87 3.87 Total: -1.00 -28.82 256.79 -8.05 -36.87 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: -2.58 Total: 10.60 kcal Atomic # 6 Polarization: -15.03 SS G_CDS: -3.34 Total: -18.37 kcal Atomic # 7 Polarization: -49.31 SS G_CDS: 1.14 Total: -48.17 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -4.57 Total: 15.59 kcal Atomic # 16 Polarization: 2.19 SS G_CDS: -2.56 Total: -0.38 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -28.82 -8.05 -36.87 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261062766.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.328 kcal (2) G-P(sol) polarization free energy of solvation -28.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds