Wall clock time and date at job start Mon Mar 30 2020 05:58:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.28736 * 121.08059 * 2 1 4 4 S 1.69398 * 108.98151 * 180.02562 * 3 2 1 5 5 C 1.76509 * 96.12181 * 359.97438 * 4 3 2 6 6 C 1.38780 * 133.55806 * 180.02562 * 5 4 3 7 7 C 1.36705 * 119.76114 * 179.97438 * 6 5 4 8 8 C 1.38978 * 120.15027 * 0.02562 * 7 6 5 9 9 C 1.36034 * 121.16059 * 359.97438 * 8 7 6 10 10 C 1.50702 * 119.89914 * 179.97438 * 9 8 7 11 11 H 1.08995 * 109.47220 * 215.26943 * 10 9 8 12 12 N 1.46899 * 109.47139 * 95.26148 * 10 9 8 13 13 C 1.50707 * 109.46628 * 335.26571 * 10 9 8 14 14 H 1.07998 * 120.00369 * 5.20143 * 13 10 9 15 15 C 1.37874 * 119.99673 * 185.21061 * 13 10 9 16 16 N 1.31514 * 119.99667 * 179.97438 * 15 13 10 17 17 Si 1.86796 * 120.00150 * 359.97438 * 15 13 10 18 18 H 1.48500 * 109.47379 * 90.00569 * 17 15 13 19 19 H 1.48506 * 109.47324 * 210.00297 * 17 15 13 20 20 H 1.48499 * 109.47191 * 330.00221 * 17 15 13 21 21 C 1.40816 * 105.51690 * 359.74267 * 5 4 3 22 22 H 1.08998 * 109.46945 * 96.24510 * 1 2 3 23 23 H 1.09004 * 109.46935 * 216.24620 * 1 2 3 24 24 H 1.08997 * 109.47259 * 336.24268 * 1 2 3 25 25 H 1.08006 * 120.11760 * 359.95327 * 6 5 4 26 26 H 1.08008 * 119.93002 * 179.97438 * 7 6 5 27 27 H 1.08004 * 119.41903 * 180.02562 * 8 7 6 28 28 H 1.00893 * 111.00179 * 292.56567 * 12 10 9 29 29 H 1.00896 * 110.99691 * 56.52805 * 12 10 9 30 30 H 0.97005 * 119.99664 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1716 1.1025 0.0000 4 16 3.8279 0.7475 -0.0007 5 6 3.6441 -1.0080 -0.0003 6 6 4.5448 -2.0639 0.0000 7 6 4.0823 -3.3503 0.0008 8 6 2.7152 -3.6006 0.0010 9 6 1.8132 -2.5824 0.0007 10 6 0.3372 -2.8864 0.0003 11 1 -0.1878 -2.1379 -0.5932 12 7 -0.1685 -2.8608 1.3792 13 6 0.1058 -4.2517 -0.5944 14 1 0.9470 -4.8747 -0.8601 15 6 -1.1800 -4.7053 -0.7994 16 7 -1.3819 -5.8966 -1.3188 17 14 -2.6350 -3.6281 -0.3395 18 1 -3.0131 -2.7842 -1.5014 19 1 -3.7848 -4.4862 0.0438 20 1 -2.2641 -2.7573 0.8048 21 6 2.2554 -1.2414 0.0065 22 1 -0.3633 -0.1118 -1.0216 23 1 -0.3633 -0.8288 0.6076 24 1 -0.3633 0.9405 0.4140 25 1 5.6073 -1.8699 -0.0009 26 1 4.7808 -4.1741 0.0006 27 1 2.3628 -4.6215 0.0021 28 1 0.2133 -3.6233 1.9186 29 1 0.0257 -1.9738 1.8191 30 1 -2.2865 -6.2159 -1.4627 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261062766.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:58:20 Heat of formation + Delta-G solvation = 42.518584 kcal Electronic energy + Delta-G solvation = -15812.759434 eV Core-core repulsion = 13312.698513 eV Total energy + Delta-G solvation = -2500.060921 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.068 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.25682 -37.96235 -36.77127 -33.98535 -31.58604 -31.20767 -30.45251 -28.15220 -24.81387 -24.18004 -22.04398 -21.39257 -19.05270 -18.66048 -17.25454 -16.87786 -16.22966 -15.98107 -15.94236 -15.87256 -15.12618 -14.51527 -14.24056 -13.91441 -13.78657 -13.39120 -12.93371 -12.76639 -12.76080 -12.57966 -12.31487 -11.92074 -11.62973 -11.51998 -10.98564 -10.68308 -10.59866 -9.92794 -9.13847 -8.72162 -8.18168 -6.30733 -0.52077 0.25368 0.40809 0.77603 1.09824 1.53201 1.61483 1.92854 2.61091 2.66983 3.20932 3.30568 3.60603 3.98019 4.10531 4.16335 4.34326 4.38231 4.52482 4.56008 4.61724 4.91297 4.97071 5.09429 5.12217 5.36692 5.52599 5.57656 5.80372 5.87683 6.21712 6.49562 6.82645 6.99650 7.46395 8.93427 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.029079 B = 0.008596 C = 0.006991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.661368 B = 3256.715047 C = 4004.327739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.166 3.834 3 N -0.472 5.472 4 S 0.166 5.834 5 C -0.143 4.143 6 C -0.095 4.095 7 C -0.070 4.070 8 C -0.125 4.125 9 C -0.029 4.029 10 C 0.215 3.785 11 H 0.058 0.942 12 N -0.830 5.830 13 C -0.523 4.523 14 H 0.053 0.947 15 C 0.030 3.970 16 N -0.947 5.947 17 Si 0.919 3.081 18 H -0.296 1.296 19 H -0.315 1.315 20 H -0.169 1.169 21 C -0.157 4.157 22 H 0.090 0.910 23 H 0.102 0.898 24 H 0.097 0.903 25 H 0.161 0.839 26 H 0.165 0.835 27 H 0.130 0.870 28 H 0.339 0.661 29 H 0.324 0.676 30 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.437 9.895 5.085 14.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.023 4.023 3 N -0.285 5.285 4 S 0.320 5.680 5 C -0.262 4.262 6 C -0.119 4.119 7 C -0.092 4.092 8 C -0.145 4.145 9 C -0.035 4.035 10 C 0.106 3.894 11 H 0.076 0.924 12 N -0.361 5.361 13 C -0.561 4.561 14 H 0.071 0.929 15 C -0.169 4.169 16 N -0.587 5.587 17 Si 0.745 3.255 18 H -0.223 1.223 19 H -0.244 1.244 20 H -0.089 1.089 21 C -0.168 4.168 22 H 0.109 0.891 23 H 0.120 0.880 24 H 0.115 0.885 25 H 0.179 0.821 26 H 0.182 0.818 27 H 0.148 0.852 28 H 0.153 0.847 29 H 0.139 0.861 30 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 9.457 11.944 4.747 15.957 hybrid contribution -0.615 -1.668 -0.100 1.781 sum 8.843 10.275 4.647 14.331 Atomic orbital electron populations 1.21228 0.85332 1.05713 1.04828 1.22816 0.99292 0.86848 0.93320 1.75707 1.01985 1.26562 1.24249 1.84373 1.07960 0.96453 1.79187 1.23680 0.96785 0.99836 1.05931 1.20279 0.99616 0.90030 1.01929 1.21469 0.95356 0.97263 0.95078 1.21123 0.93339 1.00215 0.99860 1.20650 0.99368 0.89612 0.93884 1.18488 0.85550 0.96517 0.88849 0.92409 1.59877 1.65070 1.07340 1.03810 1.21265 0.92993 1.00808 1.41008 0.92873 1.25784 1.02388 0.95698 0.92997 1.70073 1.22173 1.20520 1.45892 0.86321 0.76686 0.80648 0.81869 1.22294 1.24376 1.08900 1.20269 0.92114 0.94437 1.09974 0.89126 0.87954 0.88462 0.82135 0.81787 0.85227 0.84731 0.86110 0.93044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.12 8.58 71.24 0.61 -2.51 16 2 C 0.17 5.42 6.88 44.73 0.31 5.72 16 3 N -0.47 -15.46 11.84 -46.33 -0.55 -16.01 16 4 S 0.17 4.83 23.86 -56.49 -1.35 3.48 16 5 C -0.14 -4.38 6.71 23.03 0.15 -4.22 16 6 C -0.10 -2.44 10.02 22.04 0.22 -2.22 16 7 C -0.07 -1.84 10.00 22.09 0.22 -1.62 16 8 C -0.12 -4.31 8.89 21.93 0.19 -4.11 16 9 C -0.03 -1.05 5.27 -19.65 -0.10 -1.15 16 10 C 0.22 8.71 1.43 43.43 0.06 8.77 16 11 H 0.06 2.38 4.57 -2.39 -0.01 2.37 16 12 N -0.83 -29.53 6.03 -174.95 -1.06 -30.58 16 13 C -0.52 -26.68 8.68 25.60 0.22 -26.46 16 14 H 0.05 2.95 5.82 -2.91 -0.02 2.93 16 15 C 0.03 1.66 5.47 84.65 0.46 2.13 16 16 N -0.95 -56.84 13.96 21.45 0.30 -56.54 16 17 Si 0.92 41.77 26.88 68.60 1.84 43.61 16 18 H -0.30 -13.50 7.11 99.48 0.71 -12.79 16 19 H -0.32 -15.09 7.11 99.48 0.71 -14.38 16 20 H -0.17 -6.65 5.47 99.48 0.54 -6.11 16 21 C -0.16 -5.36 6.01 -20.20 -0.12 -5.48 16 22 H 0.09 2.56 7.85 -2.39 -0.02 2.55 16 23 H 0.10 3.00 3.69 -2.38 -0.01 3.00 16 24 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 25 H 0.16 2.94 8.06 -2.91 -0.02 2.92 16 26 H 0.16 3.14 8.06 -2.91 -0.02 3.12 16 27 H 0.13 4.96 5.90 -2.91 -0.02 4.95 16 28 H 0.34 12.02 8.94 -89.70 -0.80 11.22 16 29 H 0.32 9.88 7.26 -89.70 -0.65 9.23 16 30 H 0.26 15.02 8.31 -92.70 -0.77 14.25 16 Total: -1.00 -62.66 256.79 1.02 -61.64 By element: Atomic # 1 Polarization: 25.96 SS G_CDS: -0.40 Total: 25.56 kcal Atomic # 6 Polarization: -33.39 SS G_CDS: 2.23 Total: -31.16 kcal Atomic # 7 Polarization: -101.83 SS G_CDS: -1.30 Total: -103.13 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 1.84 Total: 43.61 kcal Atomic # 16 Polarization: 4.83 SS G_CDS: -1.35 Total: 3.48 kcal Total: -62.66 1.02 -61.64 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261062766.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.159 kcal (2) G-P(sol) polarization free energy of solvation -62.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds