Wall clock time and date at job start Mon Mar 30 2020 05:48:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48490 * 109.47339 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47239 * 300.00541 * 3 2 1 6 6 H 1.48504 * 109.46636 * 60.00100 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99806 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99686 * 359.72095 * 7 2 1 10 10 H 1.08998 * 109.47683 * 300.00180 * 9 7 2 11 11 C 1.53006 * 109.47303 * 60.00618 * 9 7 2 12 12 N 1.46896 * 109.47066 * 184.99812 * 11 9 7 13 13 C 1.50698 * 109.46993 * 179.97438 * 9 7 2 14 14 C 1.38793 * 119.96650 * 299.72572 * 13 9 7 15 15 C 1.36183 * 120.77870 * 179.73096 * 14 13 9 16 16 C 1.40970 * 120.42468 * 0.56463 * 15 14 13 17 17 N 1.34664 * 129.69194 * 179.72018 * 16 15 14 18 18 C 1.27927 * 117.84661 * 179.97438 * 17 16 15 19 19 S 1.70649 * 111.52719 * 359.97438 * 18 17 16 20 20 C 1.39923 * 118.50322 * 359.70163 * 16 15 14 21 21 C 1.37659 * 119.96937 * 119.99701 * 13 9 7 22 22 H 0.97000 * 119.99651 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.46686 * 304.99296 * 11 9 7 24 24 H 1.09000 * 109.47280 * 64.99452 * 11 9 7 25 25 H 1.00900 * 110.99907 * 56.04362 * 12 11 9 26 26 H 1.00901 * 111.00006 * 179.97438 * 12 11 9 27 27 H 1.07992 * 119.61027 * 0.02562 * 14 13 9 28 28 H 1.08002 * 119.79007 * 180.24343 * 15 14 13 29 29 H 1.08000 * 124.23766 * 179.97438 * 18 17 16 30 30 H 1.08003 * 120.01873 * 359.96385 * 21 13 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 0.0052 10 1 0.6281 -2.5552 0.8979 11 6 0.3662 -2.5827 -1.2402 12 7 -0.4569 -3.7977 -1.1755 13 6 2.2302 -3.6446 0.0028 14 6 3.1291 -3.7860 -1.0453 15 6 4.0247 -4.8118 -1.0617 16 6 4.0462 -5.7574 -0.0165 17 7 4.8371 -6.8341 0.1530 18 6 4.6594 -7.5471 1.2002 19 16 3.4021 -6.9276 2.1737 20 6 3.1338 -5.6121 1.0343 21 6 2.2286 -4.5529 1.0372 22 1 -0.4850 0.8401 0.0004 23 1 -0.2815 -1.7071 -1.2851 24 1 0.9942 -2.6162 -2.1305 25 1 -1.0009 -3.8211 -0.3261 26 1 -1.0510 -3.8757 -1.9873 27 1 3.1213 -3.0715 -1.8550 28 1 4.7196 -4.9043 -1.8833 29 1 5.2333 -8.4305 1.4385 30 1 1.5263 -4.4443 1.8505 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261063028.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:00 Heat of formation + Delta-G solvation = 47.936770 kcal Electronic energy + Delta-G solvation = -15347.830892 eV Core-core repulsion = 12848.004922 eV Total energy + Delta-G solvation = -2499.825971 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.068 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.88545 -37.16358 -34.53638 -32.24863 -30.64472 -30.15761 -27.27942 -24.59598 -23.77664 -22.30528 -21.40678 -19.70421 -17.89214 -16.65478 -15.72914 -15.51054 -14.91494 -14.67719 -14.30560 -13.85254 -13.43713 -13.36069 -13.06594 -12.27849 -12.02426 -11.96039 -11.62175 -11.07899 -10.83342 -10.65502 -10.49465 -10.03319 -9.78815 -9.68232 -9.36727 -9.33750 -8.60273 -7.99795 -7.67698 -7.47816 -6.17530 -4.26246 0.93503 1.64534 1.78420 2.08698 2.89418 3.20155 3.29312 3.34002 4.25803 4.36218 4.39090 5.10181 5.13354 5.44642 5.64111 5.74673 5.86579 5.96252 6.15309 6.44530 6.55992 6.70414 6.85774 6.91551 7.12350 7.33912 7.44011 7.71231 7.81661 7.92936 7.98181 8.25360 8.32188 8.78601 9.39603 10.86112 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.030426 B = 0.006288 C = 0.005943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.045850 B = 4451.522931 C = 4710.666005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.064 3.936 3 Si 0.896 3.104 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.512 4.512 8 H 0.063 0.937 9 C 0.080 3.920 10 H 0.037 0.963 11 C 0.063 3.937 12 N -0.859 5.859 13 C 0.021 3.979 14 C -0.090 4.090 15 C -0.070 4.070 16 C 0.041 3.959 17 N -0.458 5.458 18 C 0.041 3.959 19 S 0.055 5.945 20 C -0.155 4.155 21 C -0.094 4.094 22 H 0.262 0.738 23 H 0.070 0.930 24 H 0.046 0.954 25 H 0.330 0.670 26 H 0.321 0.679 27 H 0.133 0.867 28 H 0.124 0.876 29 H 0.194 0.806 30 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.343 -9.694 1.257 10.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.138 4.138 3 Si 0.723 3.277 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.550 4.550 8 H 0.081 0.919 9 C 0.061 3.939 10 H 0.055 0.945 11 C -0.067 4.067 12 N -0.386 5.386 13 C 0.018 3.982 14 C -0.110 4.110 15 C -0.091 4.091 16 C -0.076 4.076 17 N -0.170 5.170 18 C -0.264 4.264 19 S 0.307 5.693 20 C -0.273 4.273 21 C -0.117 4.117 22 H 0.072 0.928 23 H 0.088 0.912 24 H 0.064 0.936 25 H 0.140 0.860 26 H 0.131 0.869 27 H 0.151 0.849 28 H 0.142 0.858 29 H 0.211 0.789 30 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 3.965 -10.497 1.797 11.363 hybrid contribution -0.297 2.031 -0.624 2.145 sum 3.668 -8.466 1.173 9.301 Atomic orbital electron populations 1.69867 1.05962 1.26763 1.50192 1.24976 0.94910 0.99302 0.94597 0.86463 0.80254 0.83262 0.77701 1.19560 1.20888 1.20900 1.21119 0.93215 0.89365 1.51343 0.91926 1.17955 0.91215 0.89494 0.95204 0.94512 1.22046 0.96168 0.90303 0.98149 1.59033 1.29811 1.43618 1.06122 1.20476 0.93726 0.93624 0.90415 1.20706 0.94319 0.96765 0.99224 1.20293 0.99402 0.93078 0.96303 1.19046 0.95413 0.95665 0.97526 1.66105 1.25399 1.05184 1.20325 1.27748 1.01106 1.03675 0.93909 1.83711 1.35828 1.22651 1.27151 1.23679 1.03611 1.01508 0.98545 1.20213 0.98259 0.93023 1.00180 0.92791 0.91195 0.93562 0.85963 0.86919 0.84879 0.85824 0.78891 0.85990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.55 11.28 55.43 0.63 -22.92 16 2 C 0.06 1.65 5.30 -17.82 -0.09 1.55 16 3 Si 0.90 20.21 29.54 -169.99 -5.02 15.19 16 4 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.51 -13.01 8.24 -34.44 -0.28 -13.29 16 8 H 0.06 1.61 7.61 -52.49 -0.40 1.21 16 9 C 0.08 1.86 2.09 -92.92 -0.19 1.66 16 10 H 0.04 0.92 7.87 -51.93 -0.41 0.51 16 11 C 0.06 1.38 5.91 -3.82 -0.02 1.36 16 12 N -0.86 -16.05 9.34 -10.37 -0.10 -16.15 16 13 C 0.02 0.45 4.46 -104.63 -0.47 -0.02 16 14 C -0.09 -1.76 8.57 -40.11 -0.34 -2.10 16 15 C -0.07 -1.27 10.05 -39.29 -0.39 -1.67 16 16 C 0.04 0.78 7.00 -84.96 -0.59 0.19 16 17 N -0.46 -7.94 10.57 -12.96 -0.14 -8.08 16 18 C 0.04 0.57 12.10 51.14 0.62 1.19 16 19 S 0.05 0.80 23.17 -107.50 -2.49 -1.69 16 20 C -0.16 -2.88 6.56 -38.54 -0.25 -3.13 16 21 C -0.09 -1.84 9.69 -39.39 -0.38 -2.22 16 22 H 0.26 6.66 8.31 -40.82 -0.34 6.33 16 23 H 0.07 1.71 5.94 -51.93 -0.31 1.40 16 24 H 0.05 1.01 7.20 -51.93 -0.37 0.63 16 25 H 0.33 6.00 8.99 -39.29 -0.35 5.65 16 26 H 0.32 5.29 9.08 -39.29 -0.36 4.93 16 27 H 0.13 2.51 7.51 -52.49 -0.39 2.12 16 28 H 0.12 1.97 8.06 -52.49 -0.42 1.55 16 29 H 0.19 1.83 8.06 -52.49 -0.42 1.40 16 30 H 0.12 2.27 7.94 -52.48 -0.42 1.86 16 LS Contribution 271.75 15.07 4.10 4.10 Total: -1.00 -27.70 271.75 -8.43 -36.13 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -2.99 Total: 9.93 kcal Atomic # 6 Polarization: -14.08 SS G_CDS: -2.41 Total: -16.49 kcal Atomic # 7 Polarization: -47.54 SS G_CDS: 0.39 Total: -47.15 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Atomic # 16 Polarization: 0.80 SS G_CDS: -2.49 Total: -1.69 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -27.70 -8.43 -36.13 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261063028.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.066 kcal (2) G-P(sol) polarization free energy of solvation -27.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds