Wall clock time and date at job start Mon Mar 30 2020 05:48:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48490 * 109.47339 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47239 * 300.00541 * 3 2 1 6 6 H 1.48504 * 109.46636 * 60.00100 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99806 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99686 * 359.72095 * 7 2 1 10 10 H 1.08998 * 109.47683 * 300.00180 * 9 7 2 11 11 C 1.53006 * 109.47303 * 60.00618 * 9 7 2 12 12 N 1.46896 * 109.47066 * 184.99812 * 11 9 7 13 13 C 1.50698 * 109.46993 * 179.97438 * 9 7 2 14 14 C 1.38793 * 119.96650 * 299.72572 * 13 9 7 15 15 C 1.36183 * 120.77870 * 179.73096 * 14 13 9 16 16 C 1.40970 * 120.42468 * 0.56463 * 15 14 13 17 17 N 1.34664 * 129.69194 * 179.72018 * 16 15 14 18 18 C 1.27927 * 117.84661 * 179.97438 * 17 16 15 19 19 S 1.70649 * 111.52719 * 359.97438 * 18 17 16 20 20 C 1.39923 * 118.50322 * 359.70163 * 16 15 14 21 21 C 1.37659 * 119.96937 * 119.99701 * 13 9 7 22 22 H 0.97000 * 119.99651 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.46686 * 304.99296 * 11 9 7 24 24 H 1.09000 * 109.47280 * 64.99452 * 11 9 7 25 25 H 1.00900 * 110.99907 * 56.04362 * 12 11 9 26 26 H 1.00901 * 111.00006 * 179.97438 * 12 11 9 27 27 H 1.07992 * 119.61027 * 0.02562 * 14 13 9 28 28 H 1.08002 * 119.79007 * 180.24343 * 15 14 13 29 29 H 1.08000 * 124.23766 * 179.97438 * 18 17 16 30 30 H 1.08003 * 120.01873 * 359.96385 * 21 13 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 0.0052 10 1 0.6281 -2.5552 0.8979 11 6 0.3662 -2.5827 -1.2402 12 7 -0.4569 -3.7977 -1.1755 13 6 2.2302 -3.6446 0.0028 14 6 3.1291 -3.7860 -1.0453 15 6 4.0247 -4.8118 -1.0617 16 6 4.0462 -5.7574 -0.0165 17 7 4.8371 -6.8341 0.1530 18 6 4.6594 -7.5471 1.2002 19 16 3.4021 -6.9276 2.1737 20 6 3.1338 -5.6121 1.0343 21 6 2.2286 -4.5529 1.0372 22 1 -0.4850 0.8401 0.0004 23 1 -0.2815 -1.7071 -1.2851 24 1 0.9942 -2.6162 -2.1305 25 1 -1.0009 -3.8211 -0.3261 26 1 -1.0510 -3.8757 -1.9873 27 1 3.1213 -3.0715 -1.8550 28 1 4.7196 -4.9043 -1.8833 29 1 5.2333 -8.4305 1.4385 30 1 1.5263 -4.4443 1.8505 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261063028.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:00 Heat of formation + Delta-G solvation = 29.909902 kcal Electronic energy + Delta-G solvation = -15348.612596 eV Core-core repulsion = 12848.004922 eV Total energy + Delta-G solvation = -2500.607674 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.068 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.25660 -38.65941 -36.16953 -34.09712 -32.12371 -31.68817 -28.89107 -26.18047 -25.40875 -23.73156 -22.93255 -21.29252 -19.23729 -18.49074 -17.20578 -16.96992 -16.56161 -16.29666 -15.65156 -15.48960 -14.86609 -14.77802 -14.55705 -14.00711 -13.69811 -13.39659 -13.31050 -12.88840 -12.44473 -12.41067 -12.01592 -11.66060 -11.53765 -11.21696 -11.00726 -10.59701 -10.55139 -9.43178 -9.27557 -8.87228 -8.12385 -6.27796 -0.36733 0.32563 0.39966 0.84739 1.40060 1.43793 1.52625 1.56702 2.41335 2.88149 3.13528 3.18824 3.75844 4.05973 4.18585 4.33840 4.42862 4.50208 4.64635 4.92914 4.98738 5.09427 5.25742 5.34896 5.45837 5.58441 5.82170 5.92465 6.00485 6.20180 6.53275 6.68140 6.72118 6.90475 7.40294 8.89034 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.030426 B = 0.006288 C = 0.005943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.045850 B = 4451.522931 C = 4710.666005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.021 3.979 3 Si 0.952 3.048 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.282 1.282 7 C -0.524 4.524 8 H 0.054 0.946 9 C 0.086 3.914 10 H 0.009 0.991 11 C 0.078 3.922 12 N -0.850 5.850 13 C -0.004 4.004 14 C -0.097 4.097 15 C -0.073 4.073 16 C 0.035 3.965 17 N -0.489 5.489 18 C 0.063 3.937 19 S 0.109 5.891 20 C -0.187 4.187 21 C -0.099 4.099 22 H 0.263 0.737 23 H 0.042 0.958 24 H 0.043 0.957 25 H 0.333 0.667 26 H 0.336 0.664 27 H 0.131 0.869 28 H 0.144 0.856 29 H 0.244 0.756 30 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.622 -11.449 1.755 12.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.178 4.178 3 Si 0.778 3.222 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.208 1.208 7 C -0.563 4.563 8 H 0.072 0.928 9 C 0.067 3.933 10 H 0.027 0.973 11 C -0.053 4.053 12 N -0.378 5.378 13 C -0.007 4.007 14 C -0.118 4.118 15 C -0.094 4.094 16 C -0.083 4.083 17 N -0.202 5.202 18 C -0.241 4.241 19 S 0.361 5.639 20 C -0.305 4.305 21 C -0.122 4.122 22 H 0.072 0.928 23 H 0.060 0.940 24 H 0.061 0.939 25 H 0.144 0.856 26 H 0.147 0.853 27 H 0.149 0.851 28 H 0.162 0.838 29 H 0.260 0.740 30 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 5.229 -12.259 2.297 13.524 hybrid contribution -0.647 2.372 -0.670 2.549 sum 4.582 -9.886 1.626 11.017 Atomic orbital electron populations 1.69979 1.06964 1.27305 1.50885 1.25638 0.95631 1.02050 0.94484 0.85587 0.79099 0.79862 0.77648 1.19421 1.20397 1.20807 1.21364 0.93025 0.90805 1.51084 0.92760 1.17743 0.91425 0.89816 0.94305 0.97301 1.21718 0.95787 0.90274 0.97492 1.58927 1.30138 1.41717 1.07061 1.20246 0.94548 0.93896 0.92049 1.20669 0.94736 0.97431 0.98943 1.20472 0.99284 0.92609 0.97037 1.19335 0.95429 0.96084 0.97445 1.66200 1.26228 1.05644 1.22160 1.28700 0.99852 1.03523 0.92063 1.83571 1.35139 1.19949 1.25197 1.23948 1.03501 1.02709 1.00335 1.20204 0.98697 0.93455 0.99804 0.92820 0.93961 0.93861 0.85553 0.85258 0.85119 0.83816 0.74010 0.86010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.45 11.28 21.45 0.24 -49.21 16 2 C 0.02 1.12 5.30 84.66 0.45 1.57 16 3 Si 0.95 41.95 29.54 68.60 2.03 43.97 16 4 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 5 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 6 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 7 C -0.52 -27.41 8.24 25.60 0.21 -27.19 16 8 H 0.05 2.86 7.61 -2.92 -0.02 2.84 16 9 C 0.09 4.12 2.09 -12.29 -0.03 4.09 16 10 H 0.01 0.47 7.87 -2.39 -0.02 0.45 16 11 C 0.08 3.50 5.91 86.31 0.51 4.01 16 12 N -0.85 -32.04 9.34 -186.71 -1.74 -33.79 16 13 C 0.00 -0.16 4.46 -19.87 -0.09 -0.25 16 14 C -0.10 -3.85 8.57 21.92 0.19 -3.67 16 15 C -0.07 -2.64 10.05 22.46 0.23 -2.41 16 16 C 0.04 1.27 7.00 39.79 0.28 1.55 16 17 N -0.49 -15.56 10.57 -194.76 -2.06 -17.61 16 18 C 0.06 1.49 12.10 130.81 1.58 3.08 16 19 S 0.11 2.81 23.17 -56.49 -1.31 1.50 16 20 C -0.19 -6.68 6.56 22.94 0.15 -6.53 16 21 C -0.10 -3.91 9.69 22.40 0.22 -3.69 16 22 H 0.26 13.59 8.31 -92.71 -0.77 12.82 16 23 H 0.04 2.13 5.94 -2.39 -0.01 2.12 16 24 H 0.04 1.93 7.20 -2.39 -0.02 1.91 16 25 H 0.33 12.29 8.99 -89.69 -0.81 11.48 16 26 H 0.34 10.97 9.08 -89.69 -0.81 10.15 16 27 H 0.13 5.07 7.51 -2.91 -0.02 5.05 16 28 H 0.14 4.43 8.06 -2.91 -0.02 4.41 16 29 H 0.24 3.10 8.06 -2.91 -0.02 3.08 16 30 H 0.12 4.64 7.94 -2.91 -0.02 4.62 16 Total: -1.00 -59.96 271.75 0.42 -59.54 By element: Atomic # 1 Polarization: 25.48 SS G_CDS: -0.43 Total: 25.04 kcal Atomic # 6 Polarization: -33.14 SS G_CDS: 3.70 Total: -29.44 kcal Atomic # 7 Polarization: -97.05 SS G_CDS: -3.56 Total: -100.61 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.97 kcal Atomic # 16 Polarization: 2.81 SS G_CDS: -1.31 Total: 1.50 kcal Total: -59.96 0.42 -59.54 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261063028.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.445 kcal (2) G-P(sol) polarization free energy of solvation -59.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds