Wall clock time and date at job start Mon Mar 30 2020 05:47:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 119.99974 * 2 1 4 4 H 1.48501 * 109.47453 * 240.00378 * 3 2 1 5 5 H 1.48497 * 109.47263 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47162 * 120.00204 * 3 2 1 7 7 C 1.37875 * 120.00024 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00102 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00423 * 359.97438 * 7 2 1 10 10 C 1.52993 * 109.47447 * 180.02562 * 9 7 2 11 11 H 1.08995 * 109.47484 * 55.00201 * 10 9 7 12 12 N 1.46894 * 109.47285 * 295.00142 * 10 9 7 13 13 C 1.50701 * 109.47044 * 175.00552 * 10 9 7 14 14 C 1.38783 * 119.61734 * 80.02083 * 13 10 9 15 15 C 1.37651 * 120.07425 * 179.97438 * 14 13 10 16 16 C 1.39339 * 119.94981 * 359.97438 * 15 14 13 17 17 S 1.76081 * 131.73162 * 179.97438 * 16 15 14 18 18 C 1.70648 * 90.82571 * 180.02562 * 17 16 15 19 19 N 1.27927 * 111.52254 * 0.02562 * 18 17 16 20 20 C 1.34660 * 117.85046 * 359.71257 * 19 18 17 21 21 C 1.36189 * 119.60670 * 260.00047 * 13 10 9 22 22 H 0.96998 * 120.00478 * 359.97438 * 1 2 3 23 23 H 1.09007 * 109.46751 * 60.00081 * 9 7 2 24 24 H 1.09004 * 109.47233 * 300.01129 * 9 7 2 25 25 H 1.00902 * 111.00039 * 300.00148 * 12 10 9 26 26 H 1.00896 * 111.00278 * 63.95124 * 12 10 9 27 27 H 1.08001 * 119.96298 * 359.97438 * 14 13 10 28 28 H 1.07993 * 120.02521 * 179.97438 * 15 14 13 29 29 H 1.08000 * 124.23680 * 180.02562 * 18 17 16 30 30 H 1.08002 * 119.78545 * 0.02562 * 21 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 1 2.9294 -3.5552 0.8412 12 7 3.0084 -3.6539 -1.2557 13 6 1.4959 -4.9637 0.1232 14 6 0.8954 -5.5186 -0.9982 15 6 0.2090 -6.7073 -0.8961 16 6 0.1177 -7.3543 0.3346 17 16 -0.6663 -8.8565 0.8138 18 6 -0.1501 -8.6404 2.4259 19 7 0.5264 -7.5632 2.5617 20 6 0.7254 -6.8032 1.4681 21 6 1.4164 -5.5818 1.3341 22 1 -0.4851 0.8400 0.0004 23 1 0.6241 -2.5567 -0.8904 24 1 0.6246 -2.5571 0.8896 25 1 2.3962 -3.7517 -2.0517 26 1 3.5701 -2.8192 -1.3320 27 1 0.9666 -5.0171 -1.9521 28 1 -0.2584 -7.1382 -1.7691 29 1 -0.3674 -9.3270 3.2307 30 1 1.8897 -5.1357 2.1963 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261064281.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:47 Heat of formation + Delta-G solvation = 45.611832 kcal Electronic energy + Delta-G solvation = -15022.549844 eV Core-core repulsion = 12522.623056 eV Total energy + Delta-G solvation = -2499.926788 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.068 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.24751 -37.54783 -34.84545 -32.48675 -30.77047 -29.32470 -28.02691 -25.18228 -24.24549 -22.56073 -21.65998 -19.54476 -18.22043 -16.85066 -16.11708 -15.89920 -15.03945 -14.72338 -14.54283 -14.36909 -13.68652 -13.17446 -13.15307 -12.64121 -12.22489 -11.81299 -11.70789 -11.43650 -11.05117 -10.88002 -10.60688 -10.34104 -10.07519 -9.77027 -9.60288 -9.24626 -8.51855 -8.45167 -8.01931 -7.69133 -6.11978 -4.17180 0.57663 1.35315 1.41571 1.78841 2.53461 3.26089 3.31610 3.33263 3.93631 4.08197 4.35992 4.78111 5.05102 5.23247 5.25777 5.39801 5.54853 5.63010 5.75594 6.02896 6.26547 6.32761 6.42337 6.60970 6.86256 6.96695 7.40094 7.50642 7.68261 7.80645 7.95819 8.14335 8.26177 8.89055 9.48397 10.98613 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.044080 B = 0.004785 C = 0.004677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.060225 B = 5850.724859 C = 5985.240491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.894 3.106 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.528 4.528 8 H 0.057 0.943 9 C 0.000 4.000 10 C 0.124 3.876 11 H 0.081 0.919 12 N -0.839 5.839 13 C -0.034 4.034 14 C -0.075 4.075 15 C -0.081 4.081 16 C -0.182 4.182 17 S 0.067 5.933 18 C 0.058 3.942 19 N -0.460 5.460 20 C 0.075 3.925 21 C -0.063 4.063 22 H 0.263 0.737 23 H 0.019 0.981 24 H 0.021 0.979 25 H 0.329 0.671 26 H 0.349 0.651 27 H 0.134 0.866 28 H 0.127 0.873 29 H 0.199 0.801 30 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.696 -15.501 -0.397 15.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.141 4.141 3 Si 0.722 3.278 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.566 4.566 8 H 0.075 0.925 9 C -0.038 4.038 10 C 0.013 3.987 11 H 0.099 0.901 12 N -0.368 5.368 13 C -0.038 4.038 14 C -0.097 4.097 15 C -0.103 4.103 16 C -0.300 4.300 17 S 0.319 5.681 18 C -0.248 4.248 19 N -0.172 5.172 20 C -0.044 4.044 21 C -0.085 4.085 22 H 0.072 0.928 23 H 0.037 0.963 24 H 0.039 0.961 25 H 0.140 0.860 26 H 0.163 0.837 27 H 0.152 0.848 28 H 0.145 0.855 29 H 0.216 0.784 30 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -0.865 -16.702 0.014 16.724 hybrid contribution 0.135 2.552 -0.071 2.557 sum -0.730 -14.149 -0.057 14.168 Atomic orbital electron populations 1.69955 1.06137 1.26972 1.49817 1.25011 0.94821 0.99346 0.94942 0.86628 0.79557 0.82950 0.78707 1.20144 1.21285 1.20151 1.21092 0.92883 0.90702 1.51948 0.92454 1.19808 0.94378 0.91580 0.98042 1.20596 0.94723 0.90042 0.93346 0.90114 1.59260 1.27876 1.46071 1.03614 1.19754 0.95760 0.96151 0.92087 1.21010 0.95398 0.94137 0.99164 1.20254 1.00193 0.95496 0.94402 1.23677 1.06659 0.99904 0.99725 1.83747 1.56069 1.21589 1.06704 1.27954 0.98944 0.97842 1.00040 1.66161 1.15524 1.04801 1.30705 1.19141 1.01630 0.97285 0.86318 1.20223 0.98441 0.91525 0.98286 0.92773 0.96294 0.96083 0.85951 0.83711 0.84814 0.85461 0.78397 0.84864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.97 13.29 55.43 0.74 -25.23 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 20.90 29.54 -169.99 -5.02 15.88 16 4 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.53 -13.93 8.55 -34.44 -0.29 -14.23 16 8 H 0.06 1.45 7.14 -52.49 -0.37 1.07 16 9 C 0.00 0.01 4.60 -27.89 -0.13 -0.12 16 10 C 0.12 2.44 2.97 -68.87 -0.20 2.24 16 11 H 0.08 1.63 7.95 -51.93 -0.41 1.21 16 12 N -0.84 -14.87 9.02 -5.66 -0.05 -14.92 16 13 C -0.03 -0.62 4.91 -105.16 -0.52 -1.13 16 14 C -0.08 -1.21 9.27 -39.59 -0.37 -1.58 16 15 C -0.08 -1.18 10.07 -39.39 -0.40 -1.58 16 16 C -0.18 -2.80 6.56 -38.54 -0.25 -3.05 16 17 S 0.07 0.79 23.17 -107.50 -2.49 -1.70 16 18 C 0.06 0.69 12.10 51.14 0.62 1.31 16 19 N -0.46 -7.33 10.57 -12.96 -0.14 -7.47 16 20 C 0.07 1.28 7.00 -84.96 -0.59 0.69 16 21 C -0.06 -1.13 9.65 -39.29 -0.38 -1.51 16 22 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 23 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.33 5.44 7.31 -39.29 -0.29 5.15 16 26 H 0.35 6.32 7.90 -39.29 -0.31 6.01 16 27 H 0.13 1.94 6.63 -52.49 -0.35 1.59 16 28 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 29 H 0.20 1.52 8.06 -52.49 -0.42 1.10 16 30 H 0.13 2.30 7.99 -52.49 -0.42 1.88 16 LS Contribution 273.66 15.07 4.12 4.12 Total: -1.00 -30.22 273.66 -8.43 -38.65 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -2.98 Total: 8.02 kcal Atomic # 6 Polarization: -14.75 SS G_CDS: -2.61 Total: -17.37 kcal Atomic # 7 Polarization: -48.16 SS G_CDS: 0.55 Total: -47.61 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Atomic # 16 Polarization: 0.79 SS G_CDS: -2.49 Total: -1.70 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -30.22 -8.43 -38.65 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261064281.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.263 kcal (2) G-P(sol) polarization free energy of solvation -30.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds