Wall clock time and date at job start Mon Mar 30 2020 05:47:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 119.99974 * 2 1 4 4 H 1.48501 * 109.47453 * 240.00378 * 3 2 1 5 5 H 1.48497 * 109.47263 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47162 * 120.00204 * 3 2 1 7 7 C 1.37875 * 120.00024 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00102 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00423 * 359.97438 * 7 2 1 10 10 C 1.52993 * 109.47447 * 180.02562 * 9 7 2 11 11 H 1.08995 * 109.47484 * 55.00201 * 10 9 7 12 12 N 1.46894 * 109.47285 * 295.00142 * 10 9 7 13 13 C 1.50701 * 109.47044 * 175.00552 * 10 9 7 14 14 C 1.38783 * 119.61734 * 80.02083 * 13 10 9 15 15 C 1.37651 * 120.07425 * 179.97438 * 14 13 10 16 16 C 1.39339 * 119.94981 * 359.97438 * 15 14 13 17 17 S 1.76081 * 131.73162 * 179.97438 * 16 15 14 18 18 C 1.70648 * 90.82571 * 180.02562 * 17 16 15 19 19 N 1.27927 * 111.52254 * 0.02562 * 18 17 16 20 20 C 1.34660 * 117.85046 * 359.71257 * 19 18 17 21 21 C 1.36189 * 119.60670 * 260.00047 * 13 10 9 22 22 H 0.96998 * 120.00478 * 359.97438 * 1 2 3 23 23 H 1.09007 * 109.46751 * 60.00081 * 9 7 2 24 24 H 1.09004 * 109.47233 * 300.01129 * 9 7 2 25 25 H 1.00902 * 111.00039 * 300.00148 * 12 10 9 26 26 H 1.00896 * 111.00278 * 63.95124 * 12 10 9 27 27 H 1.08001 * 119.96298 * 359.97438 * 14 13 10 28 28 H 1.07993 * 120.02521 * 179.97438 * 15 14 13 29 29 H 1.08000 * 124.23680 * 180.02562 * 18 17 16 30 30 H 1.08002 * 119.78545 * 0.02562 * 21 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 1 2.9294 -3.5552 0.8412 12 7 3.0084 -3.6539 -1.2557 13 6 1.4959 -4.9637 0.1232 14 6 0.8954 -5.5186 -0.9982 15 6 0.2090 -6.7073 -0.8961 16 6 0.1177 -7.3543 0.3346 17 16 -0.6663 -8.8565 0.8138 18 6 -0.1501 -8.6404 2.4259 19 7 0.5264 -7.5632 2.5617 20 6 0.7254 -6.8032 1.4681 21 6 1.4164 -5.5818 1.3341 22 1 -0.4851 0.8400 0.0004 23 1 0.6241 -2.5567 -0.8904 24 1 0.6246 -2.5571 0.8896 25 1 2.3962 -3.7517 -2.0517 26 1 3.5701 -2.8192 -1.3320 27 1 0.9666 -5.0171 -1.9521 28 1 -0.2584 -7.1382 -1.7691 29 1 -0.3674 -9.3270 3.2307 30 1 1.8897 -5.1357 2.1963 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261064281.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:47 Heat of formation + Delta-G solvation = 25.145877 kcal Electronic energy + Delta-G solvation = -15023.437314 eV Core-core repulsion = 12522.623056 eV Total energy + Delta-G solvation = -2500.814258 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.068 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.43343 -38.87655 -36.36563 -34.44440 -32.03831 -30.55037 -29.91247 -26.61482 -25.68824 -23.91246 -23.16332 -20.94663 -19.35584 -18.71894 -17.33303 -17.31097 -16.62104 -16.38481 -15.77574 -15.59952 -14.86343 -14.74339 -14.41807 -14.28944 -14.12222 -13.37004 -13.11964 -12.79886 -12.68948 -12.55492 -12.25686 -11.89977 -11.83850 -11.22215 -11.01488 -10.64963 -10.60784 -9.70062 -9.41804 -8.97199 -8.22321 -6.34655 -0.53533 0.15537 0.32557 0.73560 1.40167 1.41178 1.42641 1.50331 2.38593 2.67754 3.03421 3.11413 3.62857 3.78427 4.11521 4.18552 4.25204 4.31756 4.50413 4.66209 4.82133 4.92001 5.12020 5.13226 5.37237 5.41531 5.63050 5.72895 5.75029 6.13987 6.36649 6.60783 6.72213 6.81366 7.35577 8.88660 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.044080 B = 0.004785 C = 0.004677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.060225 B = 5850.724859 C = 5985.240491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.004 3.996 3 Si 0.964 3.036 4 H -0.262 1.262 5 H -0.288 1.288 6 H -0.270 1.270 7 C -0.538 4.538 8 H 0.067 0.933 9 C 0.011 3.989 10 C 0.140 3.860 11 H 0.071 0.929 12 N -0.826 5.826 13 C -0.050 4.050 14 C -0.092 4.092 15 C -0.070 4.070 16 C -0.209 4.209 17 S 0.140 5.860 18 C 0.069 3.931 19 N -0.504 5.504 20 C 0.060 3.940 21 C -0.088 4.088 22 H 0.263 0.737 23 H -0.001 1.001 24 H -0.017 1.017 25 H 0.337 0.663 26 H 0.348 0.652 27 H 0.145 0.855 28 H 0.161 0.839 29 H 0.243 0.757 30 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.697 -17.216 -0.945 17.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.194 4.194 3 Si 0.789 3.211 4 H -0.187 1.187 5 H -0.214 1.214 6 H -0.196 1.196 7 C -0.576 4.576 8 H 0.086 0.914 9 C -0.028 4.028 10 C 0.028 3.972 11 H 0.089 0.911 12 N -0.355 5.355 13 C -0.053 4.053 14 C -0.113 4.113 15 C -0.092 4.092 16 C -0.328 4.328 17 S 0.393 5.607 18 C -0.235 4.235 19 N -0.217 5.217 20 C -0.059 4.059 21 C -0.109 4.109 22 H 0.071 0.929 23 H 0.018 0.982 24 H 0.002 0.998 25 H 0.150 0.850 26 H 0.161 0.839 27 H 0.163 0.837 28 H 0.179 0.821 29 H 0.259 0.741 30 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -0.857 -18.444 -0.550 18.472 hybrid contribution 0.038 2.882 0.148 2.886 sum -0.819 -15.561 -0.402 15.588 Atomic orbital electron populations 1.70101 1.07917 1.27817 1.51338 1.25931 0.95606 1.03274 0.94623 0.85516 0.78195 0.78182 0.79243 1.18681 1.21376 1.19552 1.21523 0.93559 0.91590 1.50879 0.91449 1.19667 0.94540 0.93350 0.95199 1.20248 0.93490 0.89564 0.93909 0.91108 1.59239 1.27447 1.45689 1.03160 1.19604 0.96824 0.95691 0.93158 1.21150 0.96110 0.95166 0.98888 1.20598 0.98768 0.94534 0.95329 1.24126 1.07032 1.02052 0.99544 1.83506 1.53909 1.18095 1.05220 1.28813 0.96162 0.96766 1.01808 1.66212 1.18179 1.06493 1.30823 1.19265 1.01747 0.97245 0.87661 1.20230 0.99856 0.92816 0.98027 0.92855 0.98226 0.99831 0.84997 0.83883 0.83735 0.82138 0.74074 0.85893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.80 13.29 21.45 0.28 -55.51 16 2 C 0.00 0.22 5.46 84.65 0.46 0.68 16 3 Si 0.96 43.12 29.54 68.60 2.03 45.15 16 4 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 5 H -0.29 -12.83 7.11 99.48 0.71 -12.13 16 6 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 7 C -0.54 -28.93 8.55 25.60 0.22 -28.71 16 8 H 0.07 3.41 7.14 -2.91 -0.02 3.39 16 9 C 0.01 0.57 4.60 29.85 0.14 0.70 16 10 C 0.14 5.70 2.97 44.17 0.13 5.83 16 11 H 0.07 2.99 7.95 -2.39 -0.02 2.97 16 12 N -0.83 -29.40 9.02 -171.83 -1.55 -30.94 16 13 C -0.05 -1.85 4.91 -20.21 -0.10 -1.95 16 14 C -0.09 -2.92 9.27 22.26 0.21 -2.71 16 15 C -0.07 -1.94 10.07 22.40 0.23 -1.71 16 16 C -0.21 -6.11 6.56 22.94 0.15 -5.96 16 17 S 0.14 2.81 23.17 -56.49 -1.31 1.50 16 18 C 0.07 1.45 12.10 130.81 1.58 3.03 16 19 N -0.50 -15.57 10.57 -194.77 -2.06 -17.63 16 20 C 0.06 2.04 7.00 39.79 0.28 2.32 16 21 C -0.09 -3.28 9.65 22.46 0.22 -3.07 16 22 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 23 H 0.00 -0.03 8.14 -2.38 -0.02 -0.05 16 24 H -0.02 -0.97 8.14 -2.38 -0.02 -0.99 16 25 H 0.34 11.11 7.31 -89.69 -0.66 10.46 16 26 H 0.35 12.54 7.90 -89.70 -0.71 11.83 16 27 H 0.14 4.13 6.63 -2.91 -0.02 4.11 16 28 H 0.16 3.25 8.06 -2.91 -0.02 3.22 16 29 H 0.24 2.62 8.06 -2.91 -0.02 2.60 16 30 H 0.12 4.61 7.99 -2.91 -0.02 4.59 16 Total: -1.00 -66.97 273.66 0.72 -66.25 By element: Atomic # 1 Polarization: 22.90 SS G_CDS: -0.18 Total: 22.72 kcal Atomic # 6 Polarization: -35.04 SS G_CDS: 3.51 Total: -31.53 kcal Atomic # 7 Polarization: -100.76 SS G_CDS: -3.32 Total: -104.08 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Atomic # 16 Polarization: 2.81 SS G_CDS: -1.31 Total: 1.50 kcal Total: -66.97 0.72 -66.25 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261064281.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.394 kcal (2) G-P(sol) polarization free energy of solvation -66.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds